Digital Commons Network^™

Drilling For Arctic Oil: Is It Worth The Risk?, Emily Kain

Student Theses 2001-2013

For many decades, Americans have been relying on fossil fuels to run our cars and to heat our houses. It has come to a point where our apparent need for this oil is more important than the environment and the natural world that we have tried so hard to preserve. The Arctic National Wildlife Refuge, commonly know as ANWR, in Alaska is the center of much debate surrounding potential drillings in order to lessen Americas dependence on foreign oil. This paper will refute this idea and prove that by not drilling in the Arctic we will not only lessen our …

The View From Ventress - 2013, University Of Mississippi. College Of Liberal Arts

Liberal Arts Newsletters

Cover Story: College Commits to Service

Phytoplankton In Virginia Lakes And Reservoirs, Harold G. Marshall

Virginia Journal of Science

This study involves a phytoplankton summer/autumn survey in 46 Virginia lakes and reservoirs during 2010-2012. A total of 307 taxa were identified which included several filamentous and colonial cyanabacteria in bloom concentrations. With the exception of one natural lake, the other sites sampled represent impoundments created decades ago, with the majority presently classified as meso- or eutrophic. Among the cyanobacteria were 6 known toxin producers (Anabaena circinalis, Anabaena spiroides, Aphanizomenon flos-aquae, Cylindrospermopsis raciborskii, Limnothrix redekei, and Microcystis aeruginosa). The study characterizes phytoplankton populations in these aging freshwater habitats taken from a large number …

Urban Forest Justice And The Rights To Wild Foods, Medicines, And Materials In The City, Melissa R. Poe, Rebecca J. Mclain, Marla R. Emery, Patrick T. Hurley

Institute for Sustainable Solutions Publications and Presentations

Urban forests are multifunctional socio-ecological landscapes, yet some of their social benefits remain poorly understood. This paper draws on ethnographic evidence from Seattle, Washington to demonstrate that urban forests contain nontimber forest products that contribute a variety of wild foods, medicines, and materials for the wellbeing of urban residents. We show that gathering wild plants and fungi in urban forests is a persistent subsistence and livelihood practice that provides sociocultural and material benefits to city residents, and creates opportunities for connecting with nature and enhancing social ties. We suggest that an orientation toward human-nature interactions in cities that conceptualizes the …

Ua12/13 Big Red, Small Planet, Christian Ryan-Downing , Editor, Leslie North , Editor

Sustainability Publications and Resources

At WKU, “The Spirit Makes the Master”. Our commitment to continuous improvement is clearly reflected in our sustainability efforts. WKU’s commitment to sustainability, whether demonstrated in campus operations or in educational programs, helps to ensure that our graduates are prepared to address the complicated environmental, social and economic issues we face today. They will be able to think critically, solve problems creatively and be engaged citizens. If that’s all we accomplish then we will have achieved great success. But our sustainability commitment pays dividends, as it also leads us to reduce our environmental footprint, practice social responsibility, and conserve natural …

Investigation Of A Pregnancy Lifestyle Intervention Using Mediation Analysis And A Power Analysis Simulation, Kelsey Grantham

Statistics

No abstract provided.

A Frailty Approach For Survival Analysis With Error-Prone Covariate, Sehee Kim, Yi Li, Donna Spiegelman

The University of Michigan Department of Biostatistics Working Paper Series

This paper discovers an inherent relationship between the survival model with covariate measurement error and the frailty model. The discovery motivates our using a frailty-based estimating equation to draw inference for the proportional hazards model with error-prone covariates. Our established framework accommodates general distributional structures for the error-prone covariates, not restricted to a linear additive measurement error model or Gaussian measurement error. When the conditional distribution of the frailty given the surrogate is unknown, it is estimated through a semiparametric copula function. The proposed copula-based approach enables us to fit flexible measurement error models without the curse of dimensionality as …

A Latent Variable Transformation Model Approach For Exploring Dysphagia, Anna Snavely, David P. Harrington, Yi Li

The University of Michigan Department of Biostatistics Working Paper Series

No abstract provided.

Social Aggregation In Pea Aphids: Experiment And Random Walk Modeling, Christa Nilsen, John Paige, Olivia Warner, Benjamin Mayhew, Ryan Sutley, Matthew Lam '15, Andrew J. Bernoff, Chad M. Topaz

All HMC Faculty Publications and Research

From bird flocks to fish schools and ungulate herds to insect swarms, social biological aggregations are found across the natural world. An ongoing challenge in the mathematical modeling of aggregations is to strengthen the connection between models and biological data by quantifying the rules that individuals follow. We model aggregation of the pea aphid, Acyrthosiphon pisum. Specifically, we conduct experiments to track the motion of aphids walking in a featureless circular arena in order to deduce individual-level rules. We observe that each aphid transitions stochastically between a moving and a stationary state. Moving aphids follow a correlated random walk. …

Singing Behavior And Geographic Variation In The Songs Of The Veery (Catharus Fuscescens) Across The Appalachian Mountains, Courtney L. Brennan

ETD Archive

The Veery (Catharus fuscescens) is a common Neotropical migrant thrush whose breeding distribution spans the Northern United States and southern Canada and continues south through the high elevations of the Appalachian Mountains. Despite its wide distribution, many aspects of Veery biology are largely unknown, including a clear characterization of song and knowledge of geographic song variation. I describe the song structure, repertoire size, and patterns of song delivery in the songs of the Veery and describe geographic song variation across four regions along the Appalachian Mountains. Visual analysis of song spectrogram images of territorial males revealed that Veeries' repertoire ranges …

Assessment Of Freshwater Mussel Communities Of Small Stream Mouths Along Lake Erie, Trevor J. Prescott

ETD Archive

Invasion of lakes and rivers by dreissenid mussels pushed out native species, particularly freshwater mussels in the Unionidae, across the northern hemisphere, and perhaps most infamously, within the Laurentian Great Lakes. However, several coastal areas along the shallowest of these lakes, Lake Erie, may be refugia for native species, but the conditions under which native species persist are unknown. I surveyed river mouths of small streams along the Lake Erie coastline and compared species abundance to land use assessed by remote sensing techniques and to standard measures of water chemistry. Sampling focused on stream zones influenced by lake-water levels for …

Striatal Dopamine Dynamics Upon Manganese Accumulation, Madiha Khalid

Wayne State University Dissertations

STRIATAL DOPAMINE DYNAMICS UPON MANGANESE ACCUMULATION

by MADIHA KHALID

August 2013

Advisor: Dr. Tiffany Mathews

Major: Chemistry (Analytical)

Degree: Doctor of Philosophy

Although manganese (Mn) is fundamental for many biological processes, exposure to excess amounts leads to a neurological disorder termed manganism. Due to its symptomatic similarity to Parkinson's disease, as well its preferential accumulation in dopamine rich brain regions, alterations in the dopamine system are implicated in the onset of manganism. In my research, Mn overexposure is mimicked via subcutaneous administration of manganese chloride to C57BL/6 mice over the course of seven days using a protocol that has been …

Effects Of Stand-Replacing Wildfire On Ecosystem Carbon Pools In Lake States Jack Pine Forests, David E. Rothstein, John Bradford, Richard Corner, Katherine Chumack, Michael Cook, Ehsan Razavy-Toosi

Joint Fire Science Program Research Project Reports

A key barrier to resolving uncertainty about the effects of fire on ecosystem C balance is the fact that fire effects on ecosystem C budgets are manifested over decadal time scales, meaning that we are largely forced to draw inferences using space-for-time substitution, or chronosequence, studies. Whereas chronosequences allow us to study processes occurring over long time scales, they are almost never re-sampled to verify the temporal trajectory of response variables, raising questions about the validity of chronosequence estimates of post-fire C dynamics. We re-sampled a well-studied fire chronosequence of jack pine (Pinus banksiana) forests in Michigan, providing a unique …

Field Guide For Nebraska Invasive Plants (Fg-27)

School of Natural Resources: Faculty Publications

What are Invasive Species: Invasive species are non-native organisms introduced into new ecosystem whose introduction and ability to spread causes environmental or economic harm, or harm to human health. Once established, these species cause irreparable harm, including: introducing disease; competing with native specics; changing the physical characteristics of natural areas; and negatively impacting local and national economies.

Invasive Species Regulations: This guide identifies federal and state-listed noxious weeds. Federal noxious weeds are regulated by the U.S. Department of Agriculture; State noxious weeds are regulated by the Nebraska Department of Agriculture Animal and Plant Health Noxious Weed Program. Aquatic invasive …

Proceedings Of The 125th Annual Meeting Of The Iowa Academy Of Science [Program, 2013], Iowa Academy Of Science

Iowa Academy of Science Documents

Contents:

Program Summary --- 2-3
Acknowledgements --- 4
Contents --- 5
Iowa Junior Academy of Science Competition --- 6
General Session I --- 7
Iowa Junior Academy of Science Award Luncheon --- 8
Iowa Academy of Science Business Meeting --- 8
Necrology --- 8
Friday Special Events (EPIC-AIMS Reception & Science at Simpson) --- 9
Iowa Academy of Science 2012-2013 Volunteers --- 10-11
Symposium A --- 12
Symposium B --- 13-14
Symposium C --- 14-15
Senior Poster Session Program --- 16-19
Social Hour --- 20
President's Banquet --- 20
General Session II --- 21
General Session III --- 22
Excellence …

Obesity And Preference-Weighted Quality Of Life Of Ethnically Diverse Middle School Children: The Healthy Study, Roberto P. Trevino, Trang H. Pham, Sharon Edelstein

GW Biostatistics Center

No abstract provided.

Protein-Protein Interactions In The Neocortex: Emx2 And Its Binding Partners, Cierra Miller

Undergraduate Honors Theses

The mammalian neocortex is divided into discrete functional areas that are marked by distinct boundaries and whose positions are assigned through a process called neocortical arealization. One of the proteins involved in this process is Emx2, a transcription factor (protein that turns genes on and off) that is expressed, or made, in a gradient along the axis of the neocortex and determines the positions of these areal boundaries. In order to determine how Emx2 carries out this function of assigning areas, we have identified the proteins QKl-7 and Cnot61 as binding partners of Emx2.

Current research involves confirming the interactions …

Characterization Of A Novel Fusion Protein Of Ipab And Ipad Of Shigella And Its Potential As A Pan-Shigella Vaccine, F. J. Martinez-Becerra, X. Chen, Nicholas E. Dickenson, S. P. Choudhari, K. Harrison, J. D. Clements, W. D. Picking, L. L. Van De Verg, R. I. Walker, W. L. Picking

Chemistry and Biochemistry Faculty Publications

Shigellosis is an important disease in the developing world, where about 90 million people become infected with Shigella spp. each year. We previously demonstrated that the type three secretion apparatus (T3SA) proteins IpaB and IpaD are protective antigens in the mouse lethal pulmonary model. In order to simplify vaccine formulation and process development, we have evaluated a vaccine design that incorporates both of these previously tested Shigella antigens into a single polypeptide chain. To determine if this fusion protein (DB fusion) retains the antigenic and protective capacities of IpaB and IpaD, we immunized mice with the DB fusion and compared …

Diffsplice: The Genome-Wide Detection Of Differential Splicing Events With Rna-Seq, Yin Hu, Yan Huang, Ying Du, Christian F. Orellana, Darshan Singh, Amy R. Johnson, Anaïs Monroy, Pei-Fen Kuan, Scott M. Hammond, Liza M. Hammond, Scott H. Randell, Derek Y. Chiang, D. Neil Hayes, Corbin Jones, Yufeng Liu, Jan F. Prins, Jinze Liu

Computer Science Faculty Publications

The RNA transcriptome varies in response to cellular differentiation as well as environmental factors, and can be characterized by the diversity and abundance of transcript isoforms. Differential transcription analysis, the detection of differences between the transcriptomes of different cells, may improve understanding of cell differentiation and development and enable the identification of biomarkers that classify disease types. The availability of high-throughput short-read RNA sequencing technologies provides in-depth sampling of the transcriptome, making it possible to accurately detect the differences between transcriptomes. In this article, we present a new method for the detection and visualization of differential transcription. Our approach does …

The Buzz On Bees, Rebecca Ruiz

Lewis Honors College Capstone Collection

Apis mellifera, more commonly known as the honeybee, plays a pivotal role in the ecosystem and in the survival of the planet. Many do not understand, nor realize, that the honeybee offers a wide array of products and services besides sweet honey. Honeybees have become endangered at a time when their presence is vital and evidence indicates that they can be the means to a more sustainable future for our planet. Particularly focused on in this research are the ideas of honeybees’ essential presence in medical advances, their participation in global economics, and their involvement in the development of …

Synthesis Of 1-Pyrenyldiazomethane For Derivatization Of Short-Chain Fatty Acids, Mary E. Kalvaitis

Senior Honors Theses and Projects

Use of I-pyrenyldiazomethane (PDAM) for derivatizing short-chain fatty acids (SCFA) is a successful way to analyze complex SCF A samples quickly and with minimal sample preparation. The costs associated with ordering PDAM from a commercial source can be high, typically more than $300 not including shipping costs. This project developed a simple two-step synthesis procedure that can be used in undergraduate chemistry laboratories. We found that the PDAM produced by this procedure is pure enough to use for our derivatization needs without further purification. This synthesis can be used to further explore the use of PDAM for fast and simple …

Eastern Michigan University Graduate Catalog, 2013-2014, Office Of The Registrar

Graduate Catalogs

No abstract provided.

Critical Research Needs For Successful Food Systems Adaptation To Climate Change, Michelle Miller, Molly Anderson, Charles A. Francis, Chad Kruger, Carol Barford, Jacob Park, Brent H. Mccown

Department of Agronomy and Horticulture: Faculty Publications

There is a growing sense of the fragility of agricultural production in the Global North and South and of increasing risks to food security, as scientific observations confirm significant changes in the Gulf Stream, polar ice, atmospheric CO₂, methane release, and other measures of climate change. This sense is heightened as each of us experiences extreme weather, such as the increasing frequency of droughts, floods, unseasonal temperatures, and erratic seasonality. The central research challenge before us is how global, national, regional, and local food systems may adapt to accelerating climate change stresses and uncertainties to ensure the availability, …

Influence Of Flue Gas Components On The Growth Rate Of Chlorella Vulgaris And Scenedesmus Acutus, Czarena Crofcheck, Aubrey Shea, Michael D. Montross, Mark Crocker, Rodney Andrews

Biosystems and Agricultural Engineering Faculty Publications

Atmospheric carbon dioxide levels have increased since the industrial revolution due to the increase in combustion of fossil fuels. One possible alternative strategy is the use of microalgae for CO₂ capture and recycling. Major components in coal-derived flue gas that may accumulate and effect algae growth include both sulfur oxides and fly ash. However, in practical application, sulfur oxides will be converted quickly to the acid product (H₂SO₄) in the aerobic aqueous conditions of algae cultivation. In this article, the influence of elevated H₂SO₄ levels and the presence of coal-derived fly ash …

‘What’S In The Niddk Cdr?’—Public Query Tools For The Niddk Central Data Repository, Huaqin Pan, Mary-Anne Ardini, Vesselina Bakalov, Michael Delatte, Paul Eggers, Laxminarayana Ganapathi, Craig R. Hollingsworth, Joshua Levy, Sheping Li, Joseph Pratt, Norma Pugh, Ying Qin, Rebekah Rasooly, Helen Ray, Jean E. Richardson, Amanda Flynn Riley, Susan M. Rogers, Sylvia Tan, Charles F. Turner, Stacie White, Philip C. Cooley

Publications and Research

The National Institute of Diabetes and Digestive Disease (NIDDK) Central Data Repository (CDR) is a web-enabled resource available to researchers and the general public. The CDR warehouses clinical data and study documentation from NIDDK funded research, including such landmark studies as The Diabetes Control and Complications Trial (DCCT, 1983–93) and the Epidemiology of Diabetes Interventions and Complications (EDIC, 1994–present) follow-up study which has been ongoing for more than 20 years. The CDR also houses data from over 7 million biospecimens representing 2 million subjects. To help users explore the vast amount of data stored in the NIDDK CDR, we developed …

Chem 109: General Chemistry I—A Peer Review Of Teaching Project Benchmark Portfolio, Eric D. Dodds

UNL Faculty Course Portfolios

This portfolio has been developed for CHEM 109: General Chemistry I. The course is the first of a freshman level two semester sequence in General Chemistry taken by students with majors in a wide variety of technical and scientific disciplines. CHEM 109 is a high enrollment class, with class sizes for individual sections nearing 200 students. The development of this portfolio was conducted with the following objectives: 1. Clearly identify, justify, and codify the major learning objectives for this course, 2. Describe and rationalize the course structure and learning assessment methods, 3. Analyze and reflect on student achievement in the …

Kamlet Laboratories And Clinitest: Idea To Product, Dean F. Martin, Brodie A. Reiger

Chemistry Faculty Publications

This paper examines the process of development of Clinitest pills that could be used in clinics or physicians' offices for rapid, convenient analysis of glucose and other components of clinical interest. It was invented by Dr. Jonas Kamlet. We were able to follow the process because his papers are accessible (as The Kamlet Laboratories Collection) at the University of South Florida Library. The accessibility of these papers gives an opportunity to see steps in the development of a successful product from conception to patent and commercialization. Kamlet, a consulting chemist, took the invention to Miles Laboratories of Elkhart, Indiana, in …

A Summary Of The Kentucky River Watershed Watch 2013 Water Sampling Results, Kentucky Water Resources Research Institute

Kentucky River Watershed Watch

No abstract provided.

Preparation Of Phosphonoterephthalic Acids Via Palladium-Catalyzed Coupling Of Aromatic Iodoesters, Nathaniel Ivan, Vladimir Benin, Alexander Morgan

Chemistry Faculty Publications

The current article reports in detail the preparation of two phosphonoterephthalic acids: 2-phosphonoterephthalic acid (1) and 2,5-diphosphonoterephthalic acid (2). Efficient, scalable syntheses have been developed for both compounds based on Pd-catalyzed coupling reactions of iodinated terephthalate esters. Phosphonoterephthalic acids are potentially useful as flame-retardant additives or as monomers for the construction of acid-pendant polymer chains.

Sanitation Infrastructure, Medicinal Plant Use And Diarrhea In Rural Costa Rican Communities, Travis Clifford Sondgerath

Open Access Theses

Diarrhea is estimated to be responsible for 3.3 million deaths a year and is particularly problematic in the developing world among children. The Millennium Development Goals established by the United Nations has set a goal of reducing mortality among children by two thirds during the new millennium. However due to the nature of diarrhea it is often difficult to study its patterns, distribution, and determinants.

This study presents an analysis of the relationship between diarrhea and sanitation infrastructure and medicinal plant use in 4 rural Costa Rican communities. Over the past few decades' access to clean drinking water and municipal …