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Bacterial Community Dynamics In Marine Sponge Cinachyrella Kuekenthali Under Irradiance And Antibiotics, Nidhi Vijayan

HCNSO Student Theses and Dissertations

The Marine sponge Cinachyrella sp used in this study are commonly found in offshore South Florida and Caribbean waters and appeared to be resilient in closed system aquaculture. Marine sponges host diverse bacterial symbionts that are distinct compared to bacteria found in ambient seawater, however the roles of a large fraction of the bacterial community in marine sponges are unknown. Comparison of symbiotic to aposymbiotic (bacteria-free) sponges could provide information about interactions (metabolic and physiologic) between the bacteria and sponge. In this study, a single Cinachyrella kuekenthali individual was subsectioned into explants (N=240) in order to provide identical bacterial communities …

In Situ Studies Of Limestone Dissolution In A Coastal Submarine Spring, Rachel Marie Schweers

USF Tampa Graduate Theses and Dissertations

Limestone dissolution in karst environments is likely due to geochemistry of the water, the actions of microbial communities, and the effect of water flow. We explored the rate of limestone dissolution and will examine here the microbial communities associated with the limestone. A conduit within the brackish cave, Double Keyhole Spring, on the coast of central west Florida was the site of the experiment. PVC pipes (5cm x 16cm) were filled with crushed limestone that was screened to a 1.9cm – 2.54cm size range. There were three treatments (5 replicates each): Control - sealed autoclaved controls with limestone and conduit …

The Founding Of The Robert B. Daugherty Water For Food Institute At The University Of Nebraska

Daugherty Water for Food Global Institute: Administrative Materials

University of Nebraska President J.B. Milliken drove to Omaha in to meet Robert Daugherty at his home. In the living room, the elder Daugherty was surrounded by Mogens Bay, his three sons and a covey of lawyers. Now 88 years old, the businessman had a reputation for being tough-minded and smart, a man who could intimidate, but also surprise with his ready sense of humor. In his long career, Daugherty had transformed agriculture and the rural landscape into the now familiar polka dot pattern, the signature of the center pivot irrigators Daugherty had popularized in the 1970s. He had started …

The Distribution Of The Inverse Square Root Transformed Error Component Of The Multiplicative Time Series Model, Bright F. Ajibade, Chinwe R. Nwosu, J. I. Mbegdu

Journal of Modern Applied Statistical Methods

The probability density function, mean and variance of the inverse square-root transformed left-truncated N(1,σ²) error component e^*_t(=1/ √e_t) of the multiplicative time series model were established. A comparison of key-statistical properties of e^*_t and e_t confirmed normality with mean 1 but with Var(e^*_t) ≈1/4Var(e_t) when σ≤0.14. Hence σ≤0.14 is the required condition for successful transformation.

Pengaruh Dosis Pupuk Fosfor Dan Pupuk Organik Cair Terhadap Pertumbuhan Dan Hasil Kacang Hijau (Vigna Radiata L.) Pada Ultisol Jatinangor, Agus Wahyudin, Tati Nurmala, R. D. Rahmawati

Jurnal Kultivasi

Percobaan ini bertujuan untuk mengetahui pengaruh dosis pupuk fosfor dan pupuk organik cair terhadap pertumbuhan dan hasil tanaman kacang hijau (Vigna radiata L.). Percobaan dilaksanakan di kebun percobaan Fakultas Pertanian Universitas Padjadjaran, Jatinangor, Jawa Barat. Rancangan percobaan yang digunakan dalam penelitian ini adalah Rancangan Acak Kelompok (RAK) dengan sembilan perlakuan dan diulang tiga kali yaitu 50 kg ha-1 pupuk fosfor + O L ha-1 pupuk organik cair, 50 kg ha-1 pupuk fosfor + 4 L ha-1 pupuk organik cair, 50 kg ha-1 pupuk fosfor + 8 L ha-1 pupuk organik cair, 75 kg ha-1 pupuk fosfor + O L ha-1 …

A Critical Proton Mr Spectroscopy Marker Of Alzheimer Early Neurodegenerative Change: Low Hippocampal Naa/Cr Ratio Impacts Apoe 4 Mexico City Children And Their Parents., Partha S. Mukherjee

Mathematics Faculty Publications and Presentations

Severe air pollution exposures produce systemic, respiratory, myocardial, and brain inflammation and Alzheimer’s disease (AD) hallmarks in clinically healthy children. We tested whether hippocampal metabolite ratios are associated with contrasting levels of air pollution, APOE and BMI in paired healthy children and one parent sharing the same APOE alleles. We used (1) H-MRS to interrogate bilateral hippocampal single-voxel in 57 children (12.45± 3.4 years) and their 48 parents (37.5± 6.78 years) low pollution city v Mexico City (MC). NAA/Cr, Cho/Cr, and mI/Cr metabolite ratios were analysed. The right hippocampus N-acetylaspartate/creatine (NAA/Cr) was significantly different between cohorts (p=0.007). The NAA/Cr ratio …

Guide To The Dr. Jane Claire Dirks-Edmunds Papers, Linfield College Archives

Linfield Archives Finding Aids

This collection reflects the life work of Dr. Jane Claire Dirks-Edmunds, a student and professor of Linfield College. A dedicated and scrupulous woman, the majority of the collection consists of her research, teaching materials, and correspondence. The collection also includes research and correspondence by Dr. Jane Claire Dirks-Edmunds’s mentor, Dr. James A. Macnab.

Effects Of Oil-Contaminated Sediments On Submerged Vegetation: An Experimental Assessment Of Ruppia Maritima, Charles W. Martin, Lauris O. Hollis, R. Eugene Turner

Faculty Publications

Oil spills threaten the productivity of ecosystems through the degradation of coastal flora and the ecosystem services these plants provide. While lab and field investigations have quantified the response of numerous species of emergent vegetation to oil, the effects on submerged vegetation remain uncertain. Here, we discuss the implications of oil exposure for Ruppia maritima, one of the most common species of submerged vegetation found in the region affected by the recent Deepwater Horizon oil spill. We grew R. maritima in a range of manipulated sediment oil concentrations: 0, 0.26, 0.53, and 1.05 mL oil /L tank volume, and tracked …

Multi-Scale Environmental Filters And Niche Partitioning Govern The Distributions Of Riparian Vegetation Guilds, Nate Hough-Snee, Brian G. Laub, David M. Merritt, Arin Lexine Long, Lloyd L. Nackley, Brett B. Roper, Joseph Michael Wheaton

Watershed Sciences Faculty Publications

Across landscapes, riparian plant communities assemble under varying levels of disturbance, environmental stress, and resource availability, leading to the development of distinct riparian life-history guilds over evolutionary timescales. Identifying the environmental filters that exert selective pressures on specific riparian vegetation guilds is a critical step in setting baseline expectations for how riparian vegetation may respond to environmental conditions anticipated under future global change scenarios. In this study, we ask: (1) What riparian plant guilds exist across the interior Columbia and upper Missouri River basins? (2) What environmental filters shape riparian guild distributions? (3) How does resource partitioning among guilds influence …

Natural Resource Management Newsletter, Department Of Natural Resource Management

NRM Newsletter

This is the Summer - Fall 2015 issue of the Department of Natural Resource Management newsletter.

Report To The Commissioner Of Soil And Land Conservation On The Trend Of The Western Australian Pastoral Resource Base 2015, David Warburton, Philip Thomas

Natural resources published reports

This report provides a regional overview of the trend in the pastoral rangelands of Western Australia, based on data from the Bureau of Meteorology, the Annual Return of Livestock and Improvements (submitted annually by pastoral lessees) and the Western Australian Rangeland Monitoring System (WARMS), for which data are available for over 20 years. The report provides a context for assessment of the range condition and trend of individual pastoral leases within defined regions of the state, as well as providing a current assessment of the status of each of the regions’ rangelands, and the drivers (both seasonal and managerial) affecting …

Producer’S Guide To Pasture-Based Beef Finishing, Gregory S. Halich, Jeff Lehmkuhler, Gregg Rentfrow, Fred Martz, S. Ray Smith, Lee Meyer

Agriculture and Natural Resources Publications

Beef cattle were routinely finished locally in Kentucky and other parts of the upper south before the 1950s, primarily on pasture with some grain or by-products from distilleries and grain processing mills. Cattle were typically born, raised, and finished on the same farm then sent to a local butcher where the meat was sold in nearby communities and cities. After the Second World War grain and transportation costs decreased dramatically and supermarket chains that required a large, steady supply channel were established. The combined effect of these changes made finishing in large centralized locations more economical. Over the next couple …

Uk Ag Equine Programs 2016 Calendar: A 12-Month Planning Calendar For The Care And Use Of Your Horses, Jason R. Philips, Glenn Mackie, Don Sorrell, Nicholas L. Carter, Paula A. Jerrell, Brian Newman, Daniel O. Wilson, Christopher Jeffcoat, Karen Douglas, Katheryn Cerny, Fernanda Camargo, Robert Coleman, Essie Rodgers, Jim Smith

Agriculture and Natural Resources Publications

The information in this calendar is provided to aid owners in planning for the care and use of their horses for the whole year.

When necessary, information is discussed in the month prior to application to allow horse owners adequate time to plan for activities such as weed control, soil and feed testing, vaccinations, etc.

Contact your local veterinarian for health-related issues and your county extension ANR, 4-H, or FCS agent for further information. County office phone numbers are listed at the end of the calendar.

Water Current, Volume 47, No. 4, Fall 2015

Water Current Newsletter

Study: Two Major U.S. Aquifers Have High Levels of Natural Uranium

Water Advanced Research and Innovation Fellowship Program (WARI)

Research: South Dakota State University, Fall 2015, Christie Delfanian, Emily Weber

State of Discovery South Dakota State University's Research Magazine

CONTENTS:

Pine Ridge Elders to educate peers about wills, advanced care planning [Page] 2
Diversity: Teaching diverse learners requires responsiveness to students' needs [Page] 3
Renaissance writers address social values still relevant today [Page] 5
Forest fire expert helps Indonesians assess carbon emissions [Page] 7
Diagnostic tests key to controlling swine virus [Page] 9
Experience, networking fuel wastewater filtration research [Page] 9
Breast-feeding friendly climate benefits businesses, communities [Page] 10
Dairy scientist harness power of milk protein [Page] 11
Pharmacists' study helps prevent antibiotic-induced kidney failure [Page] 11
Plants exchange carbohydrates for nitrogen, phosphorus from mycorrhizal fungi [Page] 12

Mass Spectrometry Based Proteomics And Lipidomics Studies, Huan Kang

Theses and Dissertations

Mass spectrometry has emerged as having a vital role in various applications to biochemical fields. In this thesis, we have utilized a variety of mass spectrometry techniques for both bacteriophage proteomics and colostrum and milk lipidomics studies. Our first study was the proteome characterization of Great Salt Lake bacteriophage NS01 with SDS-PAGE GEL to separate the viral proteins and high performance liquid chromatography (HPLC) coupled with an LTQ Orbitrap to identify the proteins after in-gel digestion. In this project, we have successfully identified 11 proteins with high confidence, p-values < 0.01, including coat protein gp88 with a coverage of 91% and tail protein gp86 with a coverage of 40.96%, which facilitated the classification of NS01 as a T7-like phage. Our second study was the discovery of colostrum and milk biomarkers that can be used to predict the likelihood of development of production-related metabolic diseases (PRMDs) in dairy cows through a lipidomics approach. In this study, an electrospray ionization, time-of-flight mass spectrometer was applied to lipid profiling, quantification and significant biomolecule selection. A Q-Star quadrupole, orthogonal time-of-flight mass spectrometer and an Agilent 6530 accurate-mass quadrupole/time-of flight mass spectrometer were both used for lipid biomarker fragmentation and identification. According to linear discriminative statistical modeling, three panels of biomarkers were defined. A combination of 2 milk lipid predictors, including DG18:0/18:0 and TG 18:0/18:0/18:1, provided PRMD predictions with 75.0% sensitivity at 90.0% specificity. A combination of 3 colostrum lipid predictors, including TG16:0/18:1/18:3, DG16:0/16:0 and C₄₀H₆₀NO, provided PRMD prediction with 90.0% sensitivity at …

Predicting 'Attention Deficit Hyperactive Disorder' Using Large Scale Child Data Set, Arpi Shah

Master's Projects

Attention deficit hyperactivity disorder (ADHD) is a disorder found in children affecting about 9.5% of American children aged 13 years or more. Every year, the number of children diagnosed with ADHD is increasing. There is no single test that can diagnose ADHD. In fact, a health practitioner has to analyze the behavior of the child to determine if the child has ADHD. He has to gather information about the child, and his/her behavior and environment. Because of all these problems in diagnosis, I propose to use Machine Learning techniques to predict ADHD by using large scale child data set. Machine …

Comparing Nutrient Recovery Via Rapid (Flash Hydrolysis) And Conventional Hydrothermal Liquefaction Processes For Microalgae Cultivation, Caleb Richard Talbot

Civil & Environmental Engineering Theses & Dissertations

Algal biofuels have the potential to provide a scalable source of renewable fuels in the near future. The high nutrient use in algae cultivation and its recovery and recycling is one of the challenges that may limit the scalability and sustainability of algal biofuels. The present study evaluates the use of Hydrolysate obtained after Flash Hydrolysis (FH) of Scenedesmus at 280 C as a nutrient source for microalgae cultivation. FH Hydrolysate nutrient recycling was compared with low temperature batch Hydrothermal Liquefaction (HTL) nutrient recycling. Oocystis and Scenedesmus were cultivated using Hydrolysate as a partial phosphorous (P) and nitrogen (N) source. …

Depression, Obesity, And Metabolic Syndrome: Prevalence And Risks Of Comorbidity In A Population-Based Study Of Mexican Americans, Rene L. Olvera, Douglas E. Williamson, Susan P. Fisher-Hoch, Kristina Vatcheva, Joseph B. Mccormick

School of Mathematical & Statistical Sciences Faculty Publications

Introduction: We examined the prevalence of depression, obesity, and metabolic syndrome and associations between them in a population-based representative cohort of Mexican Americans living on the United States-Mexico border.

Method: The sample in this cross-sectional analysis consisted of 1,768 Mexican American adults (≥ 18 years of age) assessed between the years 2004 and 2010, with whom we tested our central hypothesis of a significant relationship between obesity and depression. Depression was measured using the Center for Epidemiologic Studies-Depression scale (CES-D) with a cutoff score of ≥ 16 for depression and a cutoff score of ≥ 27 for severe depression. We …

Patient-Specific Variations In Biomarkers Across Gingivitis And Periodontitis, Radhakrishnan Nagarajan, Craig S. Miller, Dolph Dawson, Mohanad Al-Sabbagh, J. L. Ebersole

Biostatistics Faculty Publications

This study investigates the use of saliva, as an emerging diagnostic fluid in conjunction with classification techniques to discern biological heterogeneity in clinically labelled gingivitis and periodontitis subjects (80 subjects; 40/group) A battery of classification techniques were investigated as traditional single classifier systems as well as within a novel selective voting ensemble classification approach (SVA) framework. Unlike traditional single classifiers, SVA is shown to reveal patient-specific variations within disease groups, which may be important for identifying proclivity to disease progression or disease stability. Salivary expression profiles of IL-1ß, IL-6, MMP-8, and MIP-1α from 80 patients were analyzed using four classification …

Assessing The Impacts Of Inorganic And Organic Fertilizer On Crop Performance Under A Microirrigation-Plastic Mulch Regime, Niyi S. Omidire, Raymon Shange, Victor Khan, Russell Bean, Jewel Bean

Professional Agricultural Workers Journal

Abstract

This study was conducted at S & B Farm located in Eufaula, AL in 2014. The treatments were Inorganic fertilizer/“Farmer’s Mix” (NPK 13:13:13 + ammonium nitrate mixed in 3:1 ratio); Inorganic fertilizer/“Farmer’s Mix” (NPK 13:13:13 + ammonium nitrate mixed in 3:1 ratio + Bio-grow) plus microbe mix; and Organic Fertilizer – Mighty Grow (4-3-4) with a microbe mix. All fertilizers were applied prior to mulch application after which the following crops squash (Cucurbita pepo L.), cucumber (Cucumis sativus L.), and okra (Abelmoschus esculentus L. Moench) were directly seeded in a complete randomized …

Does Gender Matter? Human Elephant Conflict In Sri Lanka: A Gendered Analysis Of Human Elephant Conflict And Natural Resource Management In A Rural Sri Lankan Village, Katherine Eileen Griffin

Dissertations and Theses

This study is a gendered analysis of natural resource management at the local scale of a poor rural Sri Lankan village in a conservation buffer zone. This village experiences destruction of forests and human elephant conflict. The objective of this study is to gain an in-depth knowledge of residents' use and understandings of environmental resources, and to investigate if gender helps shape these factors. This study relies on a social sustainability conceptual framework. It tracks participation of local women and men in natural resource management, and in conservation within and outside of the Bibile community. Local nongovernmental organizations focus on …

A Multilevel Analysis Of Neighborhood Socioeconomic Effect On Preterm Births In Georgia, Usa, Wei Tu, Jun Tu, Stuart H. Tedders

Earth, Environment & Sustainability: Faculty Publications

This study estimates the neighborhood socioeconomic status (SES) effect on the risk of preterm birth (PTB) using multilevel regression (MLR) models. Birth data retrieved from year 2000 and 2010 Georgia Vital Records were linked to their respective census tracts. Principle component analysis (PCA) was performed on nine selected census variables and the first two principal components (Fac1 and Fac2) were used to represent the neighborhood-level SES in the MLR models. Two-level random intercept MLR models were specified using 122,744 and 112,578 live and singleton births at the individual level and 1613 and 1952 census tracts at the neighborhood level, for …

Economic And Environmental Modeling Of An Agricultural Watershed In The Mississippi Delta: Crop Selection Using An Lp Model And Water Quality Impacts Of Bioenergy Crops Using The Annagnps Model, Rodney Eugene Wright

Student Theses and Dissertations

The conventional ethanol mandates set forth by the renewable fuel standards in the Energy Independence and Security Act (EISA) of 2007 have resulted in an increased demand for corn. The requirement has translated into a 20% increase in corn hectares in the U.S, based on the three-year period prior to 2005 to the most recent three-year period, 2012-2014. This economic study optimized crop selection on a case study farm in the Arkansas Delta with the Purdue Crop/Linear Programming model. The cropping optimization was performed at six corn price levels consisting of near the loan rate, pre-EISA, post-EISA low, post-EISA average, …

A Comparison Of A Multistate Inpatient Ehr Database To The Hcup Nationwide Inpatient Sample., Jonathan P Deshazo, Mark A Hoffman

Manuscripts, Articles, Book Chapters and Other Papers

BACKGROUND: The growing availability of electronic health records (EHRs) in the US could provide researchers with a more detailed and clinically relevant alternative to using claims-based data.

METHODS: In this study we compared a very large EHR database (Health Facts©) to a well-established population estimate (Nationwide Inpatient Sample). Weighted comparisons were made using t-value and relative difference over diagnoses and procedures for the year 2010.

RESULTS: The two databases have a similar distribution pattern across all data elements, with 24 of 50 data elements being statistically similar between the two data sources. In general, differences that were found are consistent …

Is Atmospheric Phosphorus Pollution Altering Global Alpine Lake Stoichiometry?, Janice Brahney, Natalie Mahowald, Daniel S. Ward, Ashley P. Ballantyne, Jason C. Neff

Ecosystem and Conservation Sciences Faculty Publications

Anthropogenic activities have significantly altered atmospheric chemistry and changed the global mobility of key macro-nutrients. Here we show that contemporary global patterns in nitrogen (N) and phosphorus (P) emissions drive large hemispheric variation in precipitation chemistry. These global patterns of nutrient emission and deposition (N:P) are in turn closely reflected in the water chemistry of naturally oligotrophic lake (r² = 0.81, p < 0.0001). Observed increases in anthropogenic N deposition play a role in nutrient concentrations (r² = 0.02, p < 0.05); however, atmospheric deposition of P appears to be major contributor to this pattern (r² = 0.65, p < 0.0001). Atmospheric simulations indicate a global increase in P deposition by 1.4 times the pre-industrial rate largely due to increased dust and biomass burning emissions. Although changes in the mass flux of global P deposition are smaller than for N, the impacts on primary productivity may be greater because, on average, one unit of increased P deposition has 16 times the influence of one unit of N deposition. These stoichiometric considerations, combined with the evidence presented here, suggest that increases in P deposition may be a major driver of alpine Lake trophic status, particularly in the Southern Hemisphere. These results underscore the need for the broader scientific community to consider the impact of atmospheric phosphorus deposition on the water quality of naturally oligotrophic lakes.

Are We Making A Better World With Information And Communication Technology For Development (Ict4d) Research? Findings From The Field And Theory Building, Sajda Qureshi

Information Systems and Quantitative Analysis Faculty Publications

As Information and Communication Technologies (ICTs) continue to penetrate people’s lives the world over, there is a sense that understanding the role of ICTs in the context of development needs to be conceptualized theoretically while making empirical contributions that add to what we know (Avgerou, 2008; Davison, 2012; Sein and Harindranath, 2004; Sahay and Walsham, 1995). Other scholars have pointed to the importance of this research for the field of Information Systems (ISs) in offering broader contributions. Avgerou (2008) suggests that in the era of globalization such research offers contributions in ISs beyond “organizational organizational and national boundaries and support …

Novel Selected Hetero-Atom Doped Carbon From Renewable Resource Materials For Fuel Cell And Supercapacitor Applications, Sunil Kumar Ramasahayam

Theses and Dissertations

Doped carbon materials have gained a lot of attention recently due to their wide array of applications, for example, in dye degradation, energy conversion and storage, electrocatalysis, sensors and electronics. These doped carbon materials are claimed to have a tremendous potential to substitute expensive metal based electrocatalysts in fuel cell and supercapacitor applications. A recently established microwave assisted technique, which does not make use of any inert or reducing gas during the synthesis, was utilized to synthesize doped carbon materials. The method is simple, rapid, economical and high yielding. Renewable resource materials like tannin, spent coffee grounds and thiamine were …

Evaluating Sub-Lethal Effects Of Orchard-Applied Pyrethroids Using Video-Tracking Software To Quantify Honey Bee Behaviors, Erin M. Ingram, Julie Augustin, Marion D. Ellis, Blair Siegfried

Department of Entomology: Faculty Publications

Managed honey bee, Apis mellifera L., colonies are contracted to pollinate fruit and nut orchards improving crop quality and yield. Colonies placed in orchards are potentially exposed to pyrethroid insecticides used for broad-spectrum pest control. Pyrethroids have been reported to pose minimal risk to bees due to their low application rates in the field and putative repellent properties. This repellency is believed to alter foraging behavior with the benefit of preventing bees from encountering a lethal dose in the field. However, sub-lethal exposure to pyrethroids may adversely impact bee behavior potentially resulting in social dysfunction or disruption of foraging.

This …

Fall 2015

Scientia

Prairie prep; Chicago Wildsounds listens for ecosystem health; Up, up and away; Fulbright Travelogue: Health care in Fortaleza, Brazil; New course explores the Pope's encyclical on the environment; A "scent-sational" career in the flavor and fragrance industry; Lab notes; Paying tribute