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Detection Of Cyanotoxins (Microcystins/Nodularins) In Hepatic Tissues And Epidermal Mats Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Northeast Florida, Amber Brown

UNF Graduate Theses and Dissertations

The St. Johns River (SJR; Jacksonville, FL, USA) is a large, brackish, estuarine system characterized by considerable anthropogenic pollution, recurrent harmful algal blooms (HABs), and diverse toxin-producing cyanobacteria. The most prevalent toxins in SJR water samples are microcystins/nodularins (MCs/NODs). Additionally, the SJR provides critical habitat for a genetically and behaviorally distinct estuarine community of bottlenose dolphins (Tursiops truncatus) that routinely uses and strands in low mesohaline and oligohaline areas of the river. This population has been subject to two unusual mortality events (UME) since 2010 and has since been described as having substantial declines in population health, characterized …

Categorizing A Continuous Predictor Subject To Measurement Error, Betsabé G. Blas Achic, Tianying Wang, Ya Su, Victor Kipnis, Kevin Dodd, Raymond J. Carroll

Statistics Faculty Publications

Epidemiologists often categorize a continuous risk predictor, even when the true risk model is not a categorical one. Nonetheless, such categorization is thought to be more robust and interpretable, and thus their goal is to fit the categorical model and interpret the categorical parameters. We address the question: with measurement error and categorization, how can we do what epidemiologists want, namely to estimate the parameters of the categorical model that would have been estimated if the true predictor was observed? We develop a general methodology for such an analysis, and illustrate it in linear and logistic regression. Simulation studies are …

The Use Of Machine Learning To Detect Suckling In Pre-Weaned Calves, Sukumar Katamreddy

Theses

The weaning of cattle is a process which is known to be labour intensive and to have stressful effects on both cow and calf Common methods used in the weaning process include the temporary removal of a mother from the calf and manual observation and intervention. Early and speedy weaning is known to have a number of benefits, including health benefits for both cow and calf, additional weight gains for the calves as well as reduced labour and feed requirements. The process known as Two-Stage Weaning is recognised to be an effective low-stress approach to weaning in which the calf …

Home Is Where The Food Is: Causes And Consequences Of Partial Migration In Elk, Kristin Jennifer Barker

Graduate Student Theses, Dissertations, & Professional Papers

Migratory and non-migratory ungulates often coexist in partially migratory populations, but the mechanisms that drive and maintain different migratory behaviors within the same herd are poorly understood. In western North America, increasing numbers of elk (Cervus canadensis) reside on low-elevation winter range year-round. These residents can cause issues associated with crop damage, potential for disease transmission to livestock, and reduced effectiveness of harvest management strategies. Because migrants transfer nutrients, alter carnivore distributions, and structure vegetative communities across seasonal ranges, reductions in migratory behavior raise ecological as well as management-related concerns. This work investigated the factors affecting migratory behavior …

Efficacy Of Herbivore Exclusion On Planted Tree Seedling Vitality On A Reclaimed Surface Mine In Eastern Kentucky, Zachary J. Hackworth

Theses and Dissertations--Forestry and Natural Resources

Conventional Appalachian surface-mine reclamation techniques repress natural forest regeneration, and tree plantings are often necessary for reforestation. Reclaimed Appalachian surface mines harbor a suite of mammal herbivores that forage on recently planted seedlings. Anecdotal reports across Appalachia have implicated herbivory in the hindrance and failure of reforestation efforts, yet empirical evaluation of herbivory impacts on planted seedling vitality in this region remains relatively uninitiated. First growing-season survival, height growth, and mammal herbivory damage of black locust (Robinia pseudoacacia L.), shortleaf pine (Pinus echinata Mill.), and white oak (Quercus alba L.) are presented in response to varying intensities …

Exposure Of Kidney Bean (Phaseolus Vulgaris) Plants To Coated And Uncoated Zinc Oxide Nanomaterials Under Different Soil Conditions: Effects On Plant Growth And Seed Quality, Illya Aidee Medina Velo

Open Access Theses & Dissertations

Soil exposure to engineered nanomaterials (NMs) occurs through the intentional use of nano-agrochemicals, incidental contamination from industrial-waste release, irrigation with wastewater and gray water, or amendment with NM-loaded sludge. Although there are several reports about the effects of NMs in terrestrial plants, there is still a lack of knowledge about the effects of NMs in crop plants and their edible portions.

Among the large list of produced NMs, it is estimated that 34,000 tons of ZnO NMs are produced yearly. Due to their growing applications in cosmetics and personal care products, there is a high possibility that the ZnO NMs …

Osteohistology And Skeletochronology Of An Ontogenetic Series Of Clidastes (Squamata: Mosasauridae): Growth And Metabolism In Basal Mosasaurids, Cyrus C. Green

Master's Theses or Doctor of Nursing Practice

Clidastes was a large marine reptile from the Late Cretaceous Western Interior Seaway of North America. Though the remains of Clidastes have been found in the Cretaceous chalks and shales for over 150 years, little is known about their growth rates.

Osteohistology is a well-documented technique used to investigate growth in extinct animals. Previous histological studies of Clidastes have hypothesized higher growth rates in basal mosasaurids than varanids due to higher vascularity. These studies focused on adult specimens but did not look at ontogenetic changes in growth rates. Isotopic studies of Clidastes indicate high metabolic temperatures, leading to speculation these …

Determining The Influence Of Lupinus Arboreus And The Recruitment Of Non Native Species In The Lanphere Dunes, Cleo Mae B. Domingo, Jennifer K. Hakala, Dylan C. Layfield

Environmental Science & Management Senior Capstones

The sand dunes of the Pacific Northwest are dynamic and house diverse dune mat communities. Introduction of non native species into dune mat communities change soil characteristics of dunes, such as the case of yellow bush lupine (Lupinus arboreus). Lupine establishment provides ideal conditions for other non natives to invade. These impacts have been observed within the Lanphere Dunes Unit of the Humboldt Bay Wildlife Refuge in Arcata, California. The United States Fish and Wildlife Service (USFWS) plans to test lupine eradication methods in a one acre parcel within Lanphere. This study aims to collect baseline data for …

Pollinator Power: Supporting Bees Through Ecoregion Specific Planting Guides, Maya Thomas

Scripps Senior Theses

The pollination of flowering crops by bees is an invaluable ecosystem service that supports biodiversity and much of the global agricultural system. Pollinators move pollen between the male structures of a plant to the female structures of a plant of the same species. This fertilizes the female plant, which then produces the next generation. This process also provides the pollinator with the nectar or pollen it needs to survive. While some plants transfer pollen through different means, the majority of plants need help from pollinators to reproduce. Depending on the means of pollination, pollination can be classified as abiotic or …

Developing, Piloting, And Factor Analysis Of A Brief Survey Tool For Evaluating Food And Composting Behaviors: The Short Composting Survey, Jennie Norton

All Master's Theses

Composting on a university campus may take a variety of forms. Sustainable approaches to waste management can be taught and supported through educational programs, peer-to-peer behavior modeling, and composting program interventions. Although peer-reviewed research on composting interventions is somewhat lacking, student interest in the topic is demonstrated by a range of exploratory senior projects and pilot interventions conducted at colleges across the United States and abroad. The purpose of this study was twofold: conduct an educational compost intervention pilot study and develop a survey tool to measure participant attitudes surrounding food behaviors and composting. The Compost Project pilot study focused …

Chemical Composition And Suitability Of Some Turkish Thermal Muds As Peloids, Muazzez Çeli̇k Karakaya, Necati̇ Karakaya

Turkish Journal of Earth Sciences

Thermal muds have been used in many spas for the treatment of different diseases as well as to clean and beautify the skin and in different forms such as mud baths, masks, and cataplasms. Mineralogical and chemical compositions and the possible toxicity of the peloids were investigated and compared with some limits to determine whether they have any health benefits and potential applications for pelotherapeutic treatments. The studied peloid samples were collected from 19 spas in different parts of Turkey and they were classified as neutral to slightly alkaline, with a high electrical conductivity value that had a high chlorine …

Targeting Metastatic Breast Cancer With Statin Drugs And Coq10, Jacob Thrasher

Honors Theses

Statin drugs are commonly prescribed to lower cholesterol levels in patients, but recently statins have been under investigation as a potential anti-cancer drug. Statins are HMG-CoA reductase inhibitors and subsequently inhibit the mevalonate pathway and cholesterol synthesis. Since cholesterol trafficking is vital in the growth and metastasis of cancer, statin drugs are being studied to explore their effects on cancer cells. CoQ10, one of the products from the mevalonate pathway, also has shown some potential anti-cancer properties, but its use to combat cancer is controversial. While some studies have shown that CoQ10 supplements can be synergistic with other cancer treatment …

Environmental Risk, Resource And Production, Nancye Gannaway

Farm Systems and Economics published reports

Plan Prepare Prosper - workshop

Aims

• To identify and plan for projected changes in weather patterns and in the physical resources that underpin the productivity of the farm enterprise.
• To develop initiatives to manage observed and likely threats from the environment to farm enterprises.
• To support the achievement of long-term economic viability of land under production

Today's content will help develop risk management strategies for agricultural production systems.

Post-Fire Regeneration And Fuel Succession Patterns In Hesperocyparis Bakeri Forests, Bret Anthony Mcnamara

Cal Poly Humboldt theses and projects

Climate change is predicted to cause widespread redistribution of suitable tree habitats, as well as increase the size and frequency of wildfires in the western United States during the forthcoming century. Rare serotinous conifers may have heightened sensitivity to the impacts of both fire regime and climate shifts for multiple reasons. First, the rapid spatial rearrangement of suitable habitat will disproportionately affect trees with constrained seed dispersal capabilities, and limited dispersal is a trait associated with some genera of serotinous trees. Second, a number of serotinous conifers depend on fire disturbances for regeneration, though with the expected increase in annual …

Wolbachia Modifies Thermal Reference In Drosophila Melanogaster, Amy Michelle Truitt, Martin Kapun, Rupinder Kaur, Wolfgang J. Miller

Environmental Science and Management Faculty Publications and Presentations

Environmental variation can have profound and direct effects on fitness, fecundity, and host symbiont interactions. Replication rates of microbes within arthropod hosts, for example, are correlated with incubation temperature but less is known about the influence of host-symbiont dynamics on environmental preference. Hence, we conducted thermal preference (Tp) assays and tested if infection status and genetic variation in endosymbiont bacterium Wolbachia affected temperature choice of Drosophila melanogaster. We demonstrate that isogenic flies infected with Wolbachia preferred lower temperatures compared to uninfected Drosophila. Moreover, Tp varied with respect to three investigated Wolbachia variants (wMel, wMelCS and wMelPop). While uninfected individuals preferred …

Monitoring And Evaluating Malawi Youth Conservation Engagement After Community-Based Environmental Education Workshops, Stefanie Kramer

Environmental Science and Management Professional Master's Project Reports

This project addressed Peace Corps Malawi’s need to redevelop and implement environmental education workshops using a community-based approach, monitored project outcomes from these workshops, and provided an evaluation of strengths and areas for improvement of the environmental education workshop program.

Determination Of Sugar In Non-Alcoholic Beverages Using Near Infrared Spectroscopy Combined With Chemometrics, Sureerat Makmuang

Chulalongkorn University Theses and Dissertations (Chula ETD)

The measurement of Near infrared (NIR) spectroscopy, combined with chemometric techniques, has been widely employed for quality control in food products. This study presents a methodology to optimize the calibration models, called "universal model" of NIR spectra of primary condition (glucose solutions) and maintain the accurate prediction of secondary conditions. For instance, the models were designed for determination of glucose concentration in non-alcoholic drinks. Three stages of methodology including pre-processing, feature selection and main component extraction were applied to spectral data in order to obtain the universal calibration model. The simulated NIR spectra with different noise levels were used to …

A Supply Chain Profile Of A School-Based Feeding Program Using The Centralized Kitchen Model, Eden Delight Miro, J. Lemuel Martin, Leslie Lopez, Joselito Secson, Carmela Oracion, Jhoel Loanzon

Mathematics Faculty Publications

There has recently been renewed interest and a growing demand for school feeding programs. In the Philippines, the government, through the Department of Education (DepEd), Department of Social Welfare and Development (DSWD), and non-government organizations such as the Ateneo Center for Educational Development (ACED), has initiated such programs to address the prevalence of malnutrition among Filipino school-age children. In 2011, ACED introduced the ACED Blueplate Centralized Kitchen (ABCK) model for large-scale school feeding. This study aims to provide a supply chain profile of the first and largest city-wide implementation of the ABCK model in the Philippines to date, which is …

Using Natural Language Processing And Machine Learning For Analyzing Clinical Notes In Sickle Cell Disease Patients, Shufa Khizra

Browse all Theses and Dissertations

Sickle Cell Disease (SCD) is a hereditary disorder in red blood cells that can lead to excruciating pain episodes. SCD causes the normal red blood cells to distort its shape and turn into sickle shape. The distorted shape makes the hemoglobin inflexible and stick to the walls of the vessels thereby obstructing the free flow of blood and eventually making the tissues suffer from lack of oxygen. The lack of oxygen causes serious problems including Acute Chest Syndrome (ACS), stroke, infection, organ damage, and over the lifetime an SCD can harm a persons spleen, brain, kidneys, eyes, bones. Sickling of …

Delineation Of A Coal Combustion Residue Landfill And Underlying Karst Subsurface In Southwest Missouri Using Ert And Masw Surveys, Ruobai Zhao

Doctoral Dissertations

"The safe containment of coal combustion residual (CCR) in landfills was addressed by the U.S. Environment Protection Agency (EPA) CCR rule published in 2015. The new rule affects new and existing U.S. based CCR landfills in terms of implementing safeguard systems for safe disposal and contamination control. Electrical resistivity tomography (ERT) and multichannel analysis of surface waves (MASW) data were acquired across and in proximity to a CCR landfill in southwest Missouri, USA, with the intent to identify potential karst features and seepage pathways.

Electrical resistivity tomography data were acquired using an automated 8-channel resistivity meter and multichannel analysis of …

Cosmic-Ray Neutron Probes On The High Plains Of Nebraska: Applications To Large Scale Agriculture, Trenton E. Franz, Darin Desilets, Ammar Wahbi

Department of Earth and Atmospheric Sciences: Faculty Publications

Cosmic-rays have some surprising applications in precision agriculture. The cosmic-ray neutron probe (CRNP), when implemented as a roving instrument, can be used to create spatial maps of soil moisture, and from these maps soil hydraulic properties can be inferred. In this work, we combine data from a mobile CRNP with laboratory samples to make spatial predictions of soil hydraulic properties for select field sites around the state of Nebraska. These maps, which focus on wilting point and field capacity, can, in turn, be used to determine the optimal timing and application rates for irrigation farmers, many of whom have the …

Changes In Enzymatic Activities And Functionality Of Whole Wheat Flour Due To Steaming Of Wheat Kernels, Rachana Poudel, Devin J. Rose

Department of Food Science and Technology: Faculty Publications

The effects of steaming wheat kernels on lipolytic degradation of resulting whole flour was studied by quantifying enzyme activities and lipid degradation products during storage. Lipase, lipoxygenase, polyphenol oxidase, and peroxidase activities were decreased by up to 81%, 63%, 22%, and 34%, respectively, as the time of steaming increased up to 90 s. Steaming had no effect on starch and gluten properties. Upon storage free fatty acids decreased with respect to time of steaming. Time of steaming did not affect lipid oxidation in flour; however, total carbonyls produced in dough made from stored flour were decreased with the increase in …

Building Resilience In Social-Ecological Food Systems In Vermont, Kristine Lien Skog, Stine Elisabeth Eriksen, Christy Anderson Brekken, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

There is an expanding interest in Local Food Systems (LFSs) in Vermont, United States, along with a growing effort to create adaptive governance to facilitate action. In this case study, we investigate how adaptive governance of LFS can provide ideas and act as a catalyst for creating resilience in other social-ecological systems (SESs). By participating in meetings and interviewing stakeholders inside and outside the Vermont LFS network, we found that consumers were highly motivated to participate by supporting environmental issues, the local economy, and interactive communities, as well as building social relationships. Farmers experienced better income and increased respect in …

Total Mercury Determination In Muscle And Liver Tissue Samples From Brazilian Amazon Fish Using Slurry Sampling, João Vitor De Queiroz, José Cavalcante Souza Vieira, Izabela Da Cunha Bataglioli, Alis Correia Bittarello, Camila Pereira Braga, Grasieli De Oliveira, Cilene Do Carmo Federici Padilha, Pedro De Magalhães Padilha

Department of Biochemistry: Faculty Publications

This paper presents a slurry sampling method for total mercury determination by graphite furnace atomic absorption spectrometry (GFAAS) in tissue of fish from the Amazon. The tissue samples were lyophilized and macerated, and then the slurry samples were prepared by putting 20 mg of tissue, added to a solution containing Triton X-100, Suprapur HNO₃, and zirconium nitrate directly in sampling vials of a spectrometer. Mercury standard solutions were prepared under the same conditions as the slurry samples. The slurry samples and the mercury standard solutions were sonicated for 20 s. Twenty microliters of slurry samples were injected into …

Microstructural Changes To Proso Millet Protein Bodies Upon Cooking And Digestion, Paridhi Gulati, You Zhou, Christian Elowsky, Devin J. Rose

Department of Food Science and Technology: Faculty Publications

Cooking results in a drastic decline in digestibility of proso millet proteins, panicins. Scanning electron and confocal microscopy were used to observe morphological changes in proso millet protein bodies upon cooking and digestion that could be associated with the loss in digestibility. Spherical protein bodies (1–2.5 mm) were observed in proso millet flour and extracted protein. Cooking did not result in any noticeable change in the size or shape of the protein bodies. However, upon digestion with pepsin the poor digestibility of cooked proso millet protein was clearly evident from the differences in microstructure of the protein bodies: large cavities …

Can Increasing Grass-Fungal Endophyte Symbiotic Diversity Enhance Grassland Ecosystem Functioning?, Mahtaab Bagherzadeh

Theses and Dissertations--Plant and Soil Sciences

The relationship between biodiversity and ecosystem functioning is important in maintaining agroecosystem sustainability. Plant-microbe symbioses, such as exists between the grass tall fescue (Schedonorus arundinaceum) and the asexual fungal endophyte Epichloë coenophiala, can be utilized to enhance agroecosystem functions, such as herbivore resistance. “Novel” E. coenophiala strains that vary in the production of mammal- and insect-toxic compounds have been identified, inserted into tall fescue cultivars, and are planted in pastures globally. Novel fungal endophyte-tall fescue associations may have divergent ecosystem function effects. This study assessed effects of different fescue-endophyte symbiotic combinations on pasture ecosystem function, including aboveground …

Qualitative And Quantitative Elemental Composition Analysis Of The Surrounding Pollen Coating Via Icp-Ms, Brandy Voyer

Electronic Theses and Dissertations

Pollen evidence has proven to be a powerful forensic tool to trace a suspect or item to a victim or a crime scene. This is possible because it is microscopic, abundant in nature, resistant to degradation and decay; it presents dispersal patterns that can be used to generate a 'fingerprint' within specific areas, and has illustrated a unique morphology that can be used to classify species. While the pollen grain morphology has been extensively used to characterize the specific species, not much has been investigated as pertains to the coating that surrounds the pollen grain aside from it being categorized …

Mountain Pine Beetle Induced Changes To Lodgepole Pine Forest Stand Dynamics At Lubrecht Experimental Forest, Ben G. O'Connor

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Development Of A Gel Assay For Analysis Of Bovine Milk Casein, Masa Miscevic

Honors Theses

The main purpose of this research was to develop a gel assay for analysis of casein samples for ultimate application for studies of in vitro models for stomach and intestinal processing of dairy products in adults and infants. It is proposed that casein completely dissolves and is digestible in simulated gastric, and is somewhat soluble and digestible in simulated intestinal environments of adults and infants. The following experimental methods were devised to thoroughly examine behavior and properties of casein originating from different sources in range of solvents and varying pH values. First, casein was enriched in comparison to soluble materials …

Chemical Modifications Of Lipids And Proteins By Nonthermal Food Processing Technologies, Juan M. PéRez-AndréS, CléMentine Charoux, Patrick J. Cullen, Brijesh K. Tiwari

Articles

A range of nonthermal techniques have demonstrated process efficacy in ensuring product safety, extension of shelf life, and in general a retention of key quality attributes. However, various physical, chemical and biochemical effects of nonthermal techniques on macro and micro nutrients are evident, leading to both desirable and undesirable changes in food products. The objective of this review is to outline the effects of nonthermal techniques on food chemistry and the associated degradation mechanisms with the treatment of foods. Oxidation is one of the key mechanisms responsible for undesirable effects induced by nonthermal techniques. Degradation of key macromolecules largely depends …