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Key To The Bat Fleas Of Mongolia, Ingo Scheffler

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Fleas of the family Ischnopsyllidae belong to the common bat ectoparasites. The current taxonomic status of these insects in Mongolia includes seven species for which we provide a determination key.

Bat Ectoparasites Of Mongolia, Part 3, Ingo Scheffler, Ariunbold Jargalsaikhan, Idertsogt Bolorchimeg, Annegret Stubbe, Michael Stubbe, Andreas Abraham, K. Thiele

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The fauna of Mongolian bats and their ectoparasites is not yet fully documented. This study analyzes ectoparasite samples of 15 bat species from diverse taiga, steppe, and desert locations. We recorded 27 parasite species in total and report their abundance, host preference, and occurrence herein. In describing a new bat fly species (Basilia dolchii n. spec.), reporting six parasite species never before recorded in Mongolia, and examining rare host species such as Myotis frater and Murina hilgendorfi, this work expands present knowledge in this research area. To assess respective individual and species-specific parasite loads comprised of different insects …

Substrate Specificity Of The Lipn Hydrolase From Mycobacterium Ulcerans, Stephanie Raynor

Undergraduate Honors Thesis Collection

Mycobacterium ulcerans is the causative agent of Buruli ulcer, a tropical skin disease that affects thousands of individuals annually. Recent studies have revealed that lipolytic enzymes are involved in the pathogenicity processes of mycobacterium and could be potential targets for novel antibiotics. LipN is one proposed serine hydrolase in Mycobacterium ulcerans that contains the conserved α/β hydrolase protein fold and utilizes the conserved catalytic traid of serine, histidine, and aspartate/glutamate. The physiological substrate and biological role of LipN from M. ulcerans have not yet been determined. In this study, LipN was cloned into a pET28a plasmid and overexpressed in an …

Paper/Polymer Hybrid Microfluidic Biochips For Infectious Disease Diagnosis, Maowei Dou

Open Access Theses & Dissertations

Infectious diseases frequently cause public health concerns and they often occur in high-poverty regions. Hence, a simple and low-cost method is in great need for immediate and early diagnosis of infectious diseases. Recently, microfluidic lab-on-a-chip offers a unique opportunity for various biomedical applications. Since different chip substrates have different advantages and limitations, hybrid devices can draw more benefits from different substrates. Therefore, we have developed three paper/polymer hybrid microfluidic biochips integrated with loop-mediated isothermal amplification (LAMP) for high-sensitivity infectious disease diagnosis.

We for the first time developed a low-cost paper/polydimethylsiloxane (PDMS) hybrid microfluidic biochip for rapid, sensitive and instrument-free detection …

Vanadium Toxicological Potential Versus Its Pharmacological Activity: New Developments And Research, Agnieszka Ścibior, Juan Llopis, Alvin A. Holder, Mario Altamirano-Lozano

Chemistry & Biochemistry Faculty Publications

Scibior, A., Llopis, J., Holder, A. A., & Altamirano-Lozano, M. (2016). Vanadium toxicological potential versus its pharmacological activity: New developments and research. Oxidative Medicine and Cellular Longevity, 2016, 1-2. doi: 10.1155/2016/7612347

Engineering Virus Like Particles Towards Directing Immunologic Responses, Dustin Patterson, Benjamin Schwarz, Brian Western, Matthew Terra, Paul Krugler, Matthew Hicks, Agnieszka Rynda-Apple, Allen G. Harmsen, Trevor Douglas

Faculty Posters

This poster was presented during the 3rd Annual UT Tyler Faculty Research Poster Showcase.

Studies Of The Effectiveness Of Bisphosphonate And Vanadium-Bisphosphonate Compounds In Vitro Against Axenic Leishmania Tarentolae, Amy Christensen, Craig C. Mclauchlan, Anne Dolbecq, Pierre Mialane, Marjorie A. Jones

Faculty Publications – Chemistry

Leishmaniasis is a disease that is a significant problem for people, especially in tropical regions of the world. Current drug therapies to treat the disease are expensive, not very effective, and/or of significant side effects. A series of alkyl bisphosphonate compounds and one amino bisphosphonate compound, as well as alendronate and zoledronate, were tested as potential agents against Leishmania tarentolae. Also, two polyoxometalates (POMs) with nitrogen-containing bisphosphonate ligands, vanadium/alendronate (V5(Ale)2) and vanadium/zoledronate (V3(Zol)3), were tested against L. tarentolae and compared to the results of the alendronate and zoledronate ligands alone. Of the compounds evaluated in this study, the V5(Ale)2 …

Four Compounds Suppressing Growth Of Mycobacterium Tuberculosis, Ronald Bartzatt, Preeti Sule, Woojung Kim, Jeffrey D. Cirillo

Chemistry Faculty Publications

Aims: To demonstrate the efficacy of several small molecular weight compounds having hydrazide groups, for inhibiting the growth of Mycobacterium tuberculosis. To show these same compounds have favorable drug-likeness properties.

Study Design: To synthesize tuberculostats and test their antibacterial activity in-vitro.

Place and Duration of Study: University of Nebraska, Durham Science Center, 6001 Dodge Street, Omaha NE 68182, and Texas A&M Health Science Center, Department of Microbial Pathogenesis and Immunology, 8447 State Hwy 47, Medical Research and Education Building, Room #3012, Bryan, TX 7780. From January 2015 to June 2015.

Methodology: Hydrazide groups were formed by covalently bonding hydrazine …

Identifying Enriched Drug Fragments As Possible Candidates For Metabolic Engineering, Sunandini Sharma, Kritika Karri, Ishwor Thapa, Dhundy Bastola, Dario Ghersi

Interdisciplinary Informatics Faculty Publications

Background: Fragment-based approaches have now become an important component of the drug discovery process. At the same time, pharmaceutical chemists are more often turning to the natural world and its extremely large and diverse collection of natural compounds to discover new leads that can potentially be turned into drugs. In this study we introduce and discuss a computational pipeline to automatically extract statistically overrepresented chemical fragments in therapeutic classes, and search for similar fragments in a large database of natural products. By systematically identifying enriched fragments in therapeutic groups, we are able to extract and focus on few fragments …

The Implications Of Climate Change For Nebraska: Summary Report Of Sector-Based Roundtable Discussions, Donald A. Wilhite, Kimberly Morrow

National Drought Mitigation Center: Faculty Publications

This report is the result of the work of many individuals that contributed to the success of the series of eight sector-based roundtable events that were held in September and October of 2015. First and foremost, we would like to thank the organizers and the organizations they represent for their leadership in bringing together a diverse set of key stakeholders to discuss the implications of climate change on their sector. It was such a pleasure to work with such a dedicated group of individuals. Second, we would like to thank the more than 350 people who participated in these discussions …

Rubber Roads For The Rubber City: Testing The Suitability Of Rubberized Asphalt For Roads In Northeast Ohio, Jessica M. Fraser

Williams Honors College, Honors Research Projects

This research paper explores the benefits of using rubberized asphalt concrete (RAC) versus normal asphalt concrete (NAC) and why it is environmentally important. New road construction and repair of roadways due to potholes are always occurring in Northeast Ohio. Recently, the city of Akron’s transportation budget has increased, which includes projects such as reconstructing asphalt and resurfacing pavements throughout the city of Akron. Using rubberized asphalt may improve the quality of our roads and reduce roadway degradation which will likely save cities money.

Using rubberized asphalt recycles old tires, which do not decompose, and creates a positive use for them …

Effects Of Invasion Timing In A One-Dimensional Model Of Competing Species With An Infectious Disease, Eliza Jacops

Williams Honors College, Honors Research Projects

In combining two classes of models, we are able to analyze the dynamics of two species that compete for the same resources while fighting a disease. The native species is the disease host and the invasive species enters their habitat and encounters the disease for the first time. Their natural response is to evolve resistance to the disease, and this can assist in their invasion of the natives' habitat. We find conditions for coexistence of the two species, conditions under which an invasion would succeed and wipe out all native individuals, and conditions under which the invasion fails. We explore …

Marine Infectious Disease Dynamics And Outbreak Thresholds: Contact Transmission, Pandemic Infection, And The Potential Role Of Filter Feeders, Gorka Bidegain, Eric N. Powell, John M. Klinck, Tal Ben-Horin, Eileen E. Hofmann

CCPO Publications

Disease-causing organisms can have significant impacts on marine species and communities. However, the dynamics that underlie the emergence of disease outbreaks in marine ecosystems still lack the equivalent level of description, conceptual understanding, and modeling context routinely present in the terrestrial systems. Here, we propose a theoretical basis for modeling the transmission of marine infectious diseases (MIDs) developed from simple models of the spread of infectious disease. The models represent the dynamics of a variety of host-pathogen systems including those unique to marine systems where transmission of disease is by contact with waterborne pathogens both directly and through filter-feeding processes. …

Unraveling The Dose-Response Puzzle Of L. Monocytogenes: A Mechanistic Approach, S. M.Ashrafur Rahman, Daniel Munther, Aamir Fazil, Ben Smith, Jianhong Wu

Mathematics and Statistics Faculty Publications

Food-borne disease outbreaks caused by Listeria monocytogenes continue to impose heavy burdens on public health in North America and globally. To explore the threat L. monocytogenes presents to the elderly, pregnant woman and immuno-compromised individuals, many studies have focused on in-host infection mechanisms and risk evaluation in terms of dose-response outcomes. However, the connection of these two foci has received little attention, leaving risk prediction with an insufficient mechanistic basis. Consequently, there is a critical need to quantifiably link in-host infection pathways with the dose-response paradigm. To better understand these relationships, we propose a new mathematical model to describe the …

The Impact Of Transportation Infrastructure On Nigeria's Economic Developmeny, William A. Agbigbe

Walden Dissertations and Doctoral Studies

The United Nations Development Programme (UNDP) described Nigeria's road networks as one of the poorest and deadliest transportation infrastructural systems in the world. Data from the UNDP and the World Bank (WB) show that Nigeria has suffered transportation infrastructure deficits; these data also illustrate Nigeria as one of the lowest indices in economic development in the last decade. This qualitative case study addressed the impact of a lack of investment in transportation infrastructure in the form of road networks on Nigeria's economic development. The purpose of the study was to understand the relationship between the investment in road networks and …

Immune Gene Variation And Susceptibility To Upper Respiratory Tract Disease In Gopher Tortoises, Jean Pierre Elbers

LSU Doctoral Dissertations

The immune system defends the host from bacteria, fungi, parasites, and viruses. The immune system is partially under genetic control through immune response genes, such as those of the major histocompatibility complex (MHC) whose nucleotide variation influences the host’s ability to recognize foreign pathogens and can influence disease susceptibility. Populations of threatened species generally possess low levels of genetic variation, and genetically depauperate hosts may be at greater risk of infectious disease contributing to extirpations because they also possess low immunogenetic variation. My dissertation examines the relationship between immunogenetic variation and disease susceptibility and the factors that influence innate immune …

Knowledge-Empowered Probabilistic Graphical Models For Physical-Cyber-Social Systems, Pramod Anantharam

Browse all Theses and Dissertations

There is a rapid intertwining of sensors and mobile devices into the fabric of our lives. This has resulted in unprecedented growth in the number of observations from the physical and social worlds reported in the cyber world. Sensing and computational components embedded in the physical world constitute a Cyber-Physical System (CPS). Current science of CPS is yet to effectively integrate citizen observations in CPS analysis. We demonstrate the role of citizen observations in CPS and propose a novel approach to perform a holistic analysis of machine and citizen sensor observations. Specifically, we demonstrate the complementary, corroborative, and timely aspects …

Characterization Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase (Dxr) From Vibrio Vulnificus, Nikita K. Ussin

Theses and Dissertations

Vibrio vulnificus, a gram-negative bacterium, is the leading cause of seafood-borne illnesses and mortality in the United States. Previous studies of bacterial pathogens have identified a metabolite essential to V. vulnificus growth and function. 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Dxr) is an essential enzyme in the viability of many bacteria and catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (Dxp) to 2-C-methylerythritol 4-phosphate (MEP) within the MEP pathway found in plants and bacteria. Previous studies have been conducted to characterize Dxr homologs from other pathogens including E. coli, M. tuberculosis, and P. falciparum. Information on the structural and enzymatic characteristics of Dxr from Vibrio …

Vespucci: A Free, Cross-Platform Software Tool For Spectroscopic Data Analysis And Imaging, Daniel Patrick Foose

Browse all Theses and Dissertations

Vespucci is a software application developed for imaging and analysis of hyperspectral datasets. Vespucci offers several advantages over other software packages, including a simple user interface, no cost, and less restrictive licensing. Vespucci incorporates several analysis techniques including univariate imaging, principal components analysis, partial-least-squares regression, vertex components analysis and k- means clustering. Additionally, Vespucci can perform a number of useful data-processing operations, including filtering, normalization, baseline correction, and background subtraction. Datasets that consist of spatial or temporal data with a corresponding digital signal, including spectroscopic images, mass spectrometric images, and X-ray diffraction data can be processed in this software. The …

Diseases Of Trees In The Great Plains, Aaron D. Bergdahl, Alison Hill, Gerard C. Adams, Rachel A. Allison, John A. Appel, John Ball, James T. Blodgett, Kelly S. Burns, Whitney Cranshaw, Kelsey L. Dunnell, Mark L. Gleason, Mark O. Harrell, Thomas C. Harrington, Marcus B. Jackson, William R. Jacobi, Jennifer Juzwik, Megan M. Kennwlly, Les Koch, Jared M. Leboldus, Phillip A. Mason, Douglas L. Mcnew, Judith O'Mara, Hayley M. Nelson, Nicole Opbroek, Michael E. Ostry, Scott C. Redlin, Glen R. Stanosz, Laurie J. Stepanek, Ned Tisserat, Timothy C. Todd, James A. Walla, James J. Worrall, Simeon Wright

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Hosts, distribution, symptoms and signs, disease cycle, and management strategies are described for 84 hardwood and 32 conifer diseases in 56 chapters. Color illustrations are provided to aid in accurate diagnosis. A glossary of technical terms and indexes to hosts and pathogens also are included.

Scope

The purpose of this handbook is to assist users in diagnosing tree diseases and reducing their impact. Included are the most damaging diseases, along with some that are the subject of frequent inquiry although of minor importance. The diseases included were those encountered primarily on trees in conservation plantings such as windbreaks, farmstead plantings, …

Tick-, Mosquito-, And Rodent-Bourne Parasite Sampling Designs For The National Ecological Observatory Network, Yuri Springer, David Hoekman, Pieter T.J. Johnson, Paul A. Duffy, Rebecca A. Hufft, Holly D. Gaff

Biological Sciences Faculty Publications

Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data on infection rates among vectors and reservoirs, the National Ecological Observatory Network (NEON) will collect measurements and samples of a suite of tick-, mosquito-, and rodent-borne parasites through a continental-scale surveillance program. Here, we describe the sampling designs for these efforts, highlighting sampling priorities, field and analytical methods, and the …

Uptake Of Nanoparticles By Vibrio Gazogenes, Shonda Renee Jones

Theses and Dissertations

Vibrio gazogenes, a Gram-negative species of marine bacteria, was capable of transporting 20 nm (diameter) surface-carboxylated, polystyrene, fluorescent FluoSpheres® microspheres (excitation/emission = 505/515) through the outer membrane, which was indicated by a detectable decrease in the fluorescence intensity of the nanoparticles in the culture medium. A mechanism of transport was investigated involving the ATP-binding cassette (ABC) protein transporters that traverse the outer membrane. Inhibition of the ABC transporters did not prevent the entry of the nanoparticles into the cell, suggesting there was an alternate mechanism of transport. The addition of nanoparticles to the culture medium also did not provide any …

Identifying Parameters For Robust Network Growth Using Attachment Kernels: A Case Study On Directed And Undirected Networks, Ahmed F. Abdelzaher

Theses and Dissertations

Network growing mechanisms are used to construct random networks that have structural behaviors similar to existing networks such as genetic networks, in efforts of understanding the evolution of complex topologies. Popular mechanisms, such as preferential attachment, are capable of preserving network features such as the degree distribution. However, little is known about such randomly grown structures regarding robustness to disturbances (e.g., edge deletions). Moreover, preferential attachment does not target optimizing the network's functionality, such as information flow. Here, we consider a network to be optimal if it's natural functionality is relatively high in addition to possessing some degree of robustness …

Modern Estimation Problems In Group Testing, Md Shamim Sarker

Theses and Dissertations

In the simplest form of group testing, pools are formed by compositing a fixed number of individual specimens (e.g., blood, urine, swab, etc.) and then the pools are tested for a binary characteristic, such as presence or absence of a disease. Group testing is commonly used to screen for a variety of sexually transmitted diseases in epidemiological applications where the main goal is to increase testing efficiency. In this dissertation, we study three estimation problems that are motivated by real-life applications. We propose new methods to model group testing data for both single and multiple infections. In the first problem, …

The Owl Sensor: A Smart Nanostructure For Single Nucleotide Variation Analysis, Rebekah Karadeema

Electronic Theses and Dissertations

Analysis of single nucleotide variations (SNVs) in DNA and RNA sequences is extensively used in healthcare for detection of genetic mutations and analysis of drug resistant pathogens. Here we developed a nucleic acid sensor able to differentiate between a fully matched analyte and one with a SNV in a wide temperature range of 5°C-32°C. The sensor, dubbed here the 'Owl Sensor' due to the complex's resemblance to owl eyes, utilizes recent developments in DNA nanotechnology and synthetic biology to self-assemble a fluorescent DNA nanostructure called a Double Crossover, or DX Tile, capable of differentiating SNVs in a large temperature range, …

A Weighted Gene Co-Expression Network Analysis For Streptococcus Sanguinis Microarray Experiments, Erik C. Dvergsten

Theses and Dissertations

Streptococcus sanguinis is a gram-positive, non-motile bacterium native to human mouths. It is the primary cause of endocarditis and is also responsible for tooth decay. Two-component systems (TCSs) are commonly found in bacteria. In response to environmental signals, TCSs may regulate the expression of virulence factor genes.

Gene co-expression networks are exploratory tools used to analyze system-level gene functionality. A gene co-expression network consists of gene expression profiles represented as nodes and gene connections, which occur if two genes are significantly co-expressed. An adjacency function transforms the similarity matrix containing co-expression similarities into the adjacency matrix containing connection strengths. Gene …

The Evolution Of The Sugarcoated American Food Market And The Paradox Of Artificial Sweeteners, Mary Moses Hitt

Honors Theses

Living in present-day America makes it hard to imagine an era when sugar was not as inexpensive and readily available as it is now. It is in little colorful packets on restaurant tables, filled to the brim in jars at coffee shops, or mixed into candy products located at the beginning of every cash register. Today, sugar is one of, if not, the most widely consumed food products in the world, but our love for sugar is nothing new. Humans have been experiencing the bliss triggered by sweet-tasting foods since their earliest diets, which included fruits and honey. Our diets …

Paleolithic Protection In A Western World: A Look Into Preagricultural Nutrition As A Remedy For The Diseases Of Civilization, Emilie R. Caron

Honors Theses

The aim of this investigation is to discover the associations of the Western diet to noncommunicable diseases and to determine if a reversion to a Paleolithic diet will provide treatment and prevention of these diseases. Noncommunicable diseases, otherwise known as Diseases of Civilization, are lifestyle influenced diseases and encompass obesity, diabetes mellitus, cardiovascular disease, and associated cancers. Incidences of these diseases have skyrocketed in the past century and show no signs of decline. Since 1900, the death rates due to heart disease and cancer have risen to account for 47% of total deaths in the United States in 2010. (Tippett, …

Synthesis Of Neoglycoproteins/Neoglycopeptides And Their Immunological Evaluation In The Context Of Chagas Disease, Nathaniel Scott Schocker

Open Access Theses & Dissertations

The protozoan parasite, Trypanosoma cruzi, the etiologic agent of Chagas disease (ChD), has a cell surface covered by immunogenic glycoconjugates. A synthetic glycoarray containing non-reducing α-galactopyranosyl moieties related to mucin O-glycans of the parasite T. cruzi was evaluated by a chemiluminescent enzyme-linked immunosorbent assay (CL-ELISA) with sera from patients with chronic ChD, revealing the disaccharide Galα(1,3)Galβ as the immunodominant glycotope (Chapter 2). This disaccharide comprises the two terminal sugars of the known immunodominant glycotope Galα(1,3)Galβ(1,4)GlcNAcα, which is expressed on glycosylphosphatidylinositol-anchored mucins of the infective trypomastigote stage of T. cruzi and triggers high levels of protective anti-α-Gal antibodies (Abs) in infected …

Positive Organizational Leadership And Pro-Environmental Behavior: The Phenomenon Of Institutional Fossil Fuel Divestment, Abigail Abrash Walton

Antioch University Dissertations & Theses

Climate change is one of the most significant dynamics of our time.The predominant contributor to climate change is combustion of fossil fuels by humans.This study deepened understanding of organizational leaders’ role in enacting one approach to addressing climate change:institutional fossil fuel divestment.The study used a qualitative research design to explore U.S.-based foundation leaders’ readiness to pursue fossil fuel divestment by their institutions.The study examined leaders’ motivations and actions in pursuing divestment, while simultaneously exercising their fiduciary duty to steward institutional assets.Research questions focused on the divestment behavior change process and the outcomes of divestment on leaders and their organizations.Data collection …