Digital Commons Network^™

Synthesis And Evaluation Of Troponoids As A New Class Of Antibiotics, Feng Cao, Cari Orth, Maureen J. Donlin, Patrick Adegboyega, Marvin J. Meyers, Ryan P. Murelli, Mohamed Elagawany, Bahaa Elgendy, John E. Tavis

Publications and Research

Novel antibiotics are urgently needed. The troponoids [tropones, tropolones, and α-hydroxytropolones (α-HT)] can have anti-bacterial activity. We synthesized or purchased 92 troponoids and evaluated their antibacterial activities against Staphylococcus aureus, Escherichia coli, Acinetobacter baumannii, and Pseudomonas aeruginosa. Preliminary hits were assessed for minimum inhibitory concentrations (MIC80) and cytotoxicity (CC50) against human hepatoma cells. Sixteen troponoids inhibited S. aureus/E. coli/ A. baumannii growth by ≥80% growth at <30 >μM with CC50 values >50 μM. Two selected tropolones (63 and 285) inhibited 18 methicillin-resistant S. aureus (MRSA) strains with similar MIC80 values as against a reference strain. Two selected thiotropolones (284 and 363) …

Microbial Diversity In Urban Environments: Concern For Antibiotic Resistance, Ality Aghedo, Mangala Tawde, Nazrul I. Khandaker

Publications and Research

We are almost oblivious to the presence of microorganisms in our daily lives, but they exist and come into contact with us all the time. While some bacteria are harmless, and even beneficial, other bacteria can cause infections. A common treatment to bacterial infections is antibiotics and the success of an antibiotic depends on the resistance of the bacteria to the antibiotic. We conducted experiments to identify the types of bacteria that can be found on surfaces or within soil environments that come into contact with a vast number of people on a daily basis and how this can affect …

Safety, Tolerability, And Pharmacokinetics Of Long-Acting Injectable Cabotegravir In Low-Risk Hiv-Uninfected Individuals: Hptn 077, A Phase 2a Randomized Controlled Trial., Raphael J Landovitz, Sue Li, Beatriz Grinsztejn, Halima Dawood, Albert Y Liu, Manya Magnus, Mina C Hosseinipour, Ravindre Panchia, Leslie Cottle, Gordon Chau, Paul Richardson, Mark A Marzinke, Craig W Hendrix, Susan H Eshleman, Yinfeng Zhang, Elizabeth Tolley, Jeremy Sugarman, Ryan Kofron, Adeola Adeyeye, David Burns, Alex R Rinehart, David Margolis, William R Spreen, Myron S Cohen, Marybeth Mccauley, Joseph J Eron

Epidemiology Faculty Publications

BACKGROUND: Cabotegravir (CAB) is a novel strand-transfer integrase inhibitor being developed for HIV treatment and prevention. CAB is formulated both as an immediate-release oral tablet for daily administration and as a long-acting injectable suspension (long-acting CAB [CAB LA]) for intramuscular (IM) administration, which delivers prolonged plasma exposure to the drug after IM injection. HIV Prevention Trials Network study 077 (HPTN 077) evaluated the safety, tolerability, and pharmacokinetics of CAB LA in HIV-uninfected males and females at 8 sites in Brazil, Malawi, South Africa, and the United States.

METHODS AND FINDINGS: HPTN 077 was a double-blind, placebo-controlled phase 2a trial. Healthy …

The Use Of Bacteriophages To Control Legionella Spp. In Environmental Water Samples, Naama Abdulla Ali Al-Kaabi

Theses

Legionnaires' disease is a potentially fatal form of pneumonia which can affect human, but principally affects those who are susceptible and predisposed to infection due to old age, illness, immunosuppressed and patients at risk. Legionnaires' disease is caused by Gram-negative rod bacteria called Legionella pneumophila. An estimation of 8,000 to 18,000 are actually confirmed cases of Legionnaires' disease per year in the USA. In the UAE, there has been an increase in the number of cases of Legionnaires’ disease which are associated with recent travel to Dubai. Incidents doubled between October 2016 and August 2017. Legionella pneumophila is found …

Mathematical Modeling Of Corona Virus In The United Arab Emirates, Alya Saif Ahmad Alshehhi

Theses

The Middle East Respiratory Syndrome Coronavirus (MERS-CoV) is a viral in-fectious disease that can be transmitted to humans through interaction with infected ani-mals or humans. The Middle East respiratory syndrome (MERS) is still one of the main public health concerns in the Gulf region including United Arab Emirates. The fact that diseases have been imported into other parts of the world show the possibility of has a MERS pandemic. In this work, we are aiming to study a mathematical model of the MERS transmission among the UAE population and camels. The goal is to determine what are the paths of …

A Mathematical Model Of The Inflammatory Response To Pathogen Challenge, Lester Caudill, Fiona Lynch

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Modeling The Transmission Of Wolbachia In Mosquitoes For Controlling Mosquito-Borne Diseases, Zhuolin Qu

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

With-In Host Dynamics Of L. Monocytogenes And Thresholds For Distinct Infection Scenarios, Ashrafur Rahman, Daniel Munther, Aamir Fazil, Ben Smith, Jianhong Wu

Mathematics and Statistics Faculty Publications

The case fatality and illness rates associated with L. monocytogenes continue to pose a serious public health burden despite the significant efforts and control protocol administered by private and public sectors. Due to the advance in surveillance and improvement in detection methodology, the knowledge of sources, transmission routes, growth potential in food process units and storage, effect of pH and temperature are well understood. However, the with-in host growth and transmission mechanisms of L. monocytogenes, particularly within the human host, remain unclear, largely due to the limited access to scientific experimentation on the human population. In order to provide insight …

Understanding The Impact Of Social Factors On The Transmission Dynamics Of Infectious Diseases, Victor Moreno

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Immuno-Epidemiological Modeling Of Infectious Diseases: A Careful Attempt At A Review, Maia Martcheva

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Vaccination Strategies And Herd Immunity Thresholds In Small World Models, Emily Mcclung, Sam Rivas, Emma Soriano

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

College Of Science And Mathematics Newsletter, Fall 2018, College Of Science And Mathematics, Wright State University

College of Science and Mathematics Newsletters

This 3 page newsletter discusses various happenings within the College of Science and Mathematics. It begins with a letter from the dean, and continues on with news, events, alumni news, and other community news.

Developing A New Sensing Technology For Double-Stranded Dna Detection Utilizing Engineered Zinc Finger Proteins And Nanomaterials, Dat Thinh Ha

Masters Theses & Specialist Projects

A specific double-stranded DNA sensing system is of great interest for diagnostic and other biomedical applications. Zinc finger domains, which recognize double-stranded DNA, can be engineered to form custom DNA-binding proteins for recognition of specific DNA sequences. As a proof of concept, a sequence-enabled reassembly of TEM-1 β- lactamase system (SEER-LAC) was previously demonstrated to develop zinc finger protein (ZFP) arrays for the detection of a double-stranded bacterial DNA sequence. Here, we implemented the SEER-LAC system to demonstrate the direct detection of pathogenspecific DNA sequences present in E. coli O157:H7 on the lab-on-a chip. ZFPs customdesigned to detect shiga toxin …

Quinolines From The Cyclocondensation Of Isatoic Anhydride With Ethyl Acetoacetate: Preparation Of Ethyl 4-Hydroxy-2-Methylquinoline-3-Carboxylate And Derivatives, Nicholas Jentsch, Jared D. Hume, Emily B. Crull, Samer M. Beauti, Amy H. Pham, Julie A. Pigza, Jacques Kessl, Matthew G. Donahue

Faculty Publications

A convenient two-step synthesis of ethyl 4-hydroxy-2-methylquinoline-3-carboxylate derivatives has been developed starting from commercially available 2-aminobenzoic acids. In step 1, the anthranilic acids are smoothly converted to isatoic anhydrides using solid triphosgene in THF. In step 2, the anhydride electrophiles are reacted with the sodium enolate of ethyl acetoacetate, generated from sodium hydroxide, in warm N,N-dimethylacetamide resulting in the formation of substituted quinolines. A degradation–build-up strategy of the ethyl ester at the 3-position allowed for the construction of the α-hydroxyacetic acid residue required for the synthesis of key arylquinolines involved in an HIV integrase project.

Systemic Immunosuppression And Risk Of Age-Related Macular Degeneration, Harpal S. Sandhu, Joshua Lambert, Yan Xu, Henry J. Kaplan

Applied Statistics Laboratory Faculty Publications

A local immune response has been implicated in the pathogenesis of age-related macular degeneration (AMD), but it is unclear if systemic immunosuppressive/immunomodulatory therapy (IMT) protects against the onset and/or progression of AMD. We performed a retrospective cohort study using a Cox proportional hazards model of two cohorts. Cohort 1 included patients with stage V chronic kidney disease (CKD) status post kidney transplantation, on at least one IMT agent, and older than 50. Cohort 2 included patients with stage IV or V CKD who had not undergone kidney transplantation, were not on IMT, and were older than 50. The main outcomes …

Latent Tuberculosis Infection Is Associated With Increased Unstimulated Levels Of Interferon-Gamma In Lima, Peru, Moises A. Huaman, David Henson, Paola L. Rondan, Eduardo Ticona, Gustavo Miranda, Richard J. Kryscio, Raquel Mugruza, Ernesto Aranda, Cesar Ticona, Susan Abarca, Paula Heredia, Andres Aguirre, Timothy R. Sterling, Beth A. Garvy, Carl J. Fichtenbaum

Internal Medicine Faculty Publications

Background

We previously reported increased unstimulated blood levels of interferon-gamma in persons with latent tuberculosis infection (LTBI) in the United States, suggesting enhanced immune activation in LTBI. To investigate this further in a TB-endemic setting, we assessed interferon-gamma levels in persons with and without LTBI in Peru.

Methods

We analyzed data from patients with and without a recent type 1 (spontaneous) acute myocardial infarction (AMI) who were enrolled from two public hospital networks in Lima, Peru, and underwent LTBI testing using the QuantiFERON® TB Gold In-tube (QFT) assay. Participants with a positive QFT test were defined as having LTBI, whereas …

Parameter Sensitivity For In Vitro Anthrax Studies, Yareley Gonzalez, Maria Macias-Bedolla, Megan O. Powell

Spora: A Journal of Biomathematics

Studies done on interactions between spores and macrophages done in vitro show inconsistent results based on experimental protocol and inhibit meaningful extrapolation to in vivo. In this study, we perform a sensitivity analysis of a model representing in vitro studies of interactions between anthrax spores and macrophages to help address the effects of these inconsistencies. We perform both local and global analyses using Latin hypercube sampling and partial rank correlation coefficients. Our analysis indicates the amount of intracellular bacteria over time is most sensitive to the killing of intracellular bacteria by the macrophages and replication of the bacteria inside …

Cross-Sectional Hiv Incidence Estimation Accounting For Heterogeneity Across Communities, Yuejia Xu, Oliver B. Laeyendecker, Rui Wang

Harvard University Biostatistics Working Paper Series

No abstract provided.

Governance For A Changing Climate: Adapting Boston’S Built Environment For Increased Flooding, Stephanie Kruel, Rebecca Herst, David Cash

School for the Environment General Publications

Climate Change is impacting everything in our society and in our world. The changes we are already experiencing are starting to multiply and accelerate. Determining how to respond to this new reality wisely within the governance and governmental structures that we have built is a complex challenge. Some might argue it is humankind’s greatest test. Given the monumental size of this task, it is difficult to simultaneously address all of the related issues both broadly and deeply. This is the third and final in a series of reports from the Sustainable Solutions Lab that were sponsored by the Boston Green …

Influential Host Factors To The Incidence Of Hiv/Aids In Key Populations In Pati District, Dwi Murtono, Puguh Riyanto, Zahroh Shaluhiyah

Kesmas

Human Immunodeficiency Virus (HIV) dan Acquired Immune Deficiency Syndrome (AIDS) merupakan penyakit berbahaya di dunia yang salah satu metode penularannya adalah melalui hubungan seksual. Penelitian ini bertujuan menjelaskan faktor-faktor yang berpengaruh terhadap kejadian HIV/AIDS pada populasi kunci. Penelitian dilakukan dari bulan Maret sampai September 2016. Penelitian analitik observasional dengan rancangan kasus kontrol pada populasi kunci di Kabupaten Pati. Kasus sebanyak 53 pasien positif HIV/AIDS, sedangkan kontrol sebanyak 53 pasien negative HIV/AIDS.Pengambilan sampel menggunakan teknik consecutive sampling. Data diperoleh dari riwayat medis dan wawancara kuesioner. Penelitian ini menggunakan uji kai kuadrat pada analisis bivariat dan regresi logistik ganda pada analisis multivariat. …

Computational Thinking And Literacy, Sharin Rawhiya Jacob, Mark Warschauer

Journal of Computer Science Integration

Today’s students will enter a workforce that is powerfully shaped by computing. To be successful in a changing economy, students must learn to think algorithmically and computationally, to solve problems with varying levels of abstraction. These computational thinking skills have become so integrated into social function as to represent fundamental literacies. However, computer science has not been widely taught in K-12 schools. Efforts to create computer science standards and frameworks have yet to make their way into mandated course requirements. Despite a plethora of research on digital literacies, research on the role of computational thinking in the literature is sparse. …

Management Implications Of Sex-Specific Habitat Use By Nycticeius Humeralis In North-Central Arkansas, Megan Lynn Buckley

Student Theses and Dissertations

The goal of this study was to evaluate evening bat (Nycticeius humeralis) habitat use and provide a proxy strategy to evaluate habitat use by other species. I used the software Maximum Entropy to evaluate habitat suitability models for evening bats using three different modeling strategies; percent variable contribution, the jackknife test, and variable response curves. The predictors included in the models were 10 land use land cover classes, four forest management strategies, slope, and the normalized difference vegetation index (NDVI). The results of this research showed that distance to burned stands and proximity to edge habitat are the most important …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Writing A Moral Code: Algorithms For Ethical Reasoning By Humans And Machines, James F. Mcgrath, Ankur Gupta

Scholarship and Professional Work - LAS

The moral and ethical challenges of living in community pertain not only to the intersection of human beings one with another, but also our interactions with our machine creations. This article explores the philosophical and theological framework for reasoning and decision-making through the lens of science fiction, religion, and artificial intelligence (both real and imagined). In comparing the programming of autonomous machines with human ethical deliberation, we discover that both depend on a concrete ordering of priorities derived from a clearly defined value system.

Serum Proteins In Healthy And Diseased Florida Manatees (Trichechus Manatus Latirostris), J.W. Harvey, K.E. Harr, D. Murphy, M.T. Walsh, M. De Wit, R.K. Bonde

United States Geological Survey: Staff Publications

A major goal of this study was to determine whether serum protein fractions of healthy Florida manatees differ with age, sex, or living environments (wild versus housed). A second goal was to determine which serum protein fractions vary in diseased versus healthy manatees. Serum protein fractions were determined using agarose gel electrophoresis. Healthy adults had slightly higher total serum protein and total globulin concentrations than younger animals. This largely resulted from an increase in gamma globulins with age. Total serum protein, albumin, alpha-1 globulin, beta globulin, and total globulin concentrations were slightly higher in housed manatees compared to wild manatees, …

Evaluating Climate Change Policy Through The Endangered Species Act, Richie Donahou

Graduate Theses and Dissertations

This research sets out to address a growing knowledge gap of climate change science in regards to the state of Arkansas. Within the coming chapters, the goal of this research is to examine climate data and to identify if any evidence of climate change can be detected and what are the policies in place to adapt to these potential changes. Furthermore, the scope of this research will be narrowed to a few counties over the southwest Arkansas, and a specific endangered species, the Leopard Darter. Upon examination of previous environmental and ecological climate change related research it became clear that …

Modeling Plant Virus Propagation And An Optimal Control, Mark Jackson

Mathematics Dissertations - Archive

Plants are a food source for man and many species. They also are sources of medicines, fibers for clothes, and are essential for a healthy environment. But plants are subject to diseases many of which are caused by viruses. These viruses often kill the plant. As a result, billions of dollars are lost every year because of virus related crop loss. Most of the time, virus propagation is done by a vector, usually insects that bite infected plants, get themselves infected and then bite susceptible plants. To combat the vectors, and ultimately the viruses, pesticides are often used as a …

Synthesis, Characterization, And Applications Of Ammonium/Phosphonium Chitosan Derivatives For Investigative Dna Interactions, Quinton Kirk Wyatt

Graduate Theses/Dissertations

Chitosan is examined as a non-viral vector capable of efficient gene delivery due to its favorable properties such as biodegradability, biocompatibility, and is non-toxic to mammalian cells. Cell modifications and vector permeability are enhanced in non-viral vectors that incorporate electrostatic interactions. This work synthesizes cationic (N⁺, P⁺) chitosan derivatives, to enhance electrostatic interactions towards nucleotides, using amide coupling agents EDC and HOBt. The final chitosan derivatives will bear cationic functional groups (N⁺, P⁺) with various alkyl groups (Me, Et, Pr, Ph) to examine their affinities to nucleotides and antifungal properties. mPEG grafted …

Fluorescent Labeling Of Antibiotic Resistant Bacteria Model Dna, Janice Darko

Theses and Dissertations

Global threats to treatment of bacterial infections due to antibiotic resistance (AR) have been on the rise in recent years. Current diagnostic tests identify bacteria by using blood culture, which takes more than 24 hours. This study focuses on the fluorescent labeling of DNA derived from bacterial AR genes (KPC & VIM) and other model DNAs using oligreen dye (OG) and molecular beacons (MB). A NanoDrop 3300 fluorospectrometer was used to take fluorescence measurements. Linear dynamic range and labeling efficiency were dependent on the following optimized conditions: dilution factor of OG (200 fold), buffer (20 mM Tris HCl, pH 8), …

Dynamics Of Coupled Particles In A Time-Dependent, Double-Gyre Flow, Manuel Albrizzio

Theses, Dissertations and Culminating Projects

We consider a time-dependent, wind-driven, stochastic double-gyre flow, and investigate the interaction between the flow and coupled particles operating within the flow. It is known that noise can cause individual particles to escape from one gyre to another gyre. By computing the Lagrangian coherent structures (LCS) of the system, one can determine low and high probability regions of particle escape. We adjust the coupling between two particles, and study the effect on particle escape for a variety of initial conditions and noise intensities.