Digital Commons Network^™

Monitoring Strategies In Cave Microclimate Studies, Nenad Buzjak, Dalibor Paar, Aurel Persoiu, Christos Pennos, Franci Gabrovšek, Valerija Rossi

International Journal of Speleology

Cave atmospheres are spatially confined but dynamical systems that influence subterranean ecosystems, geomorphological processes, registration and preservation of climatic signals in sedimentary archives, cultural heritage, and conservation management. Despite major advances in cave climatology, methodological approaches to microclimate monitoring remain fragmented and are in some cases still shaped by the long-standing assumption that cave air temperature simply reflects the mean annual surface temperature. This paper revisits that assumption and develops an experience- and literature-based methodological framework for cave microclimate research. Key terminology is addressed by distinguishing between cave climate, cave microclimate, and cave meteorology, and by situating microclimatic variability within …

Cerebral Documents And Algorithmic Sensemaking: Searching For Expressions In Human And Artificial Cognitive Collaborations, Rebekah L. Cowell

Proceedings from the Document Academy

Generative Artificial Intelligences (AIs) and current advanced large language models (LLMs) are algorithmically designed to generate text-based conversations as conversational agents (CAs), by replicating human language and conversational communication. Pairing human cognition with generative computationally coded cognition. We have never been here before: cerebral and artificial information collaborations and processing producing expressions that may or may not become visible as second-hand/secondary source documents.

Sensemaking or sense(un)making is a unique autonomous human drive cognitively, our information processing is sensemaking in action and expressions and articulations are evidence of the sensemaking cycle. Documentation [expressed or articulated through various mediums] are a product …

Representing The Apparatus In Nineteenth And Twentieth Century Chemical Abstracting Literature, Evan F. Kuehn

Proceedings from the Document Academy

The rise of abstracting services in the 20th century is usually associated with the explosion of original scientific research and its attendant journal literature. The abstract was a tool of information dissemination and access for increasingly expansive and international work. What is often overlooked, however, is the correlation between original research and the technologies that made these advances available. Scientific apparatuses were, however, documented from the beginning, and were also a part of the rise of abstract literature in the 19^th and 20^th centuries. In this paper I examine the development of abstracts for apparatuses and patents in …

A Transcriptional Program Associated With Neurotransmission In The Living Human Brain, Alexander W. Charney, Lora E. Liharska, Eric Vornholt, Alissa Valentine, Anina Lund, Alice Hashemi, Ryan C. Thompson, Terry Lohrenz, Jessica S. Johnson, Nicole Bussola, Esther Cheng, You Jeong Park, Salman Qasim, Alisha Aristel, Lillian Wilkins, Kimia Ziafat, Hannah Silk, Lisa M. Linares, Brendan Sullivan, Claudia Feng, Beniamino Hadj-Amar Ph.D.

Faculty Publications

At the foundation of neurotransmission, and by extension at the foundation of brain function, are coordinated programs of gene expression involving many thousands of genes. These programs are poorly defined in humans because most modern studies that characterize human brain gene expression use tissue obtained in the postmortem state when neurotransmission and brain function have ceased. Here, to advance knowledge of the gene expression programs at the foundation of neurotransmission in the human brain, gene expression was characterized in 130 prefrontal cortex (PFC) samples obtained from participants of the Living Brain Project (LBP) during neurosurgical procedures in conjunction with intracranial …

Survival On Image Regression With Application To Partially Functional Distributional Representation Of Physical Activity, Rahul Ghosal, Sunwoo Emma Cho, Marcos Matabuena

Faculty Publications

Technological advancements in wearable devices and medical imaging often lead to high-dimensional physiological signals in the form of images or surfaces. To address these data structures, we develop a novel survival on image regression model with a specific focus on partially functional distributional representation of wearable data. The existing approaches for functional data and survival outcomes have been primarily developed for uni-dimensional functional predictors. Drawing on recent developments in distributional data analysis, we model temporally varying distributional patterns of physical activity (PA) as a partially functional distributional predictor within a semiparametric Cox model framework. We use tensor product splines to …

Environmental Chemicals And Maternal Depression During And After Pregnancy: A Scoping Review, Pengfei Guo, Yunyue Shi, Cindy Nguyen, Haoran Zhuo, Tormod Rogne, Zeyan Liew

Faculty Publications

Purpose of Review

There is increasing evidence that several environmental exposures may pose a risk for depression, including maternal depression. We conducted a scoping review of epidemiological evidence regarding maternal exposure to environmental chemicals and perinatal depression.

Recent Findings

We searched PubMed, Embase, Web of Science, Dimensions, and Scopus, and summarized the findings from 27 articles that examined environmental chemical exposures and maternal depression. Studies of ambient air pollutants (N = 11) showed exposure to NO₂ and PM10 to be most consistently associated with antenatal or postnatal depression. Studies of endocrine-disrupting chemicals, including phthalates (n = 6), …

Cover And Contents

Turkish Journal of Physics

No abstract provided.

Optical Textures Of A Uniform Liquid Crystal Lattice: Monte Carlo Simulations With Newton Colors And Mueller Matrix Analysis, Yakup Emül

Turkish Journal of Physics

The optical textures of a uniform liquid crystal (LC) molecule lattice structure were explored through Monte Carlo (MC) simulations, combined with Mueller matrix (MM) formalism and Newton’s color theory. These simulations utilized a Lebwohl-Lasher (LL) type interacting LC lattice under periodic boundary conditions, generating ensemble-averaged configurations at two temperature regimes (kBT = 0.9 and 1.2), corresponding respectively to nematic and isotropic states. These configurations were then incorporated into the MM framework to evaluate the polarization states of transmitted light. To visually interpret the resulting interference phenomena, we propose a new visualization method based on a modern interpretation of Newton’s color …

George Sturgeon, Metal Fluorides & Vice Chair, Mark A. Griep, George D. Sturgeon

Department of Chemistry: Faculty Interviews

Dr. George Sturgeon was a chemistry professor at the University of Nebraska -Lincoln for 39 years, from 1964 to 2003. During his time at UNL, he spent 15 years as the vice chair. Something in his youth must have sparked an interest in chemistry because he earned a bachelor’s in that subject from the University of North Dakota in Grand Forks. Then, he traveled 870 miles east to Michigan State University in East Lansing where he earned his doctorate. Immediately after graduating, he joined the University of Nebraska-Lincoln in 1964 as an assistant professor but was soon promoted to associate …

Limit Theorems For Andrews’ Restricted Overpartitions, Tapas Bhowmik, Alex Cao, Jack Frew, John Lehman, Wei-Lun Tsai

Faculty Publications

The study of overpartitions in recent years has been used to great effect in various fields, including hypergeometric series, q-series identities, and mathematical physics. We investigate the limiting distributions of the number of parts in a family of overpartitions of n,  introduced by Andrews, where parts are counted with two different weights. Using Andrews’ identities and the saddle-point method, we establish two central limit theorems (CLTs) for the number of parts as n → ∞, corresponding to these weightings. We also derive explicit formulas for the mean and variance in each case.

Vegetation Enhances Nitrogen Removal In Stormwater Ponds In Coastal South Carolina, Darcy Perin, Annie Bourbonnais

Faculty Publications

Coastal development and the increase in impervious surfaces lead to greater stormwater volumes, a key contributor to nonpoint source pollution. Stormwater ponds are generally highly efficient in eliminating particle-bound nutrients, such as phosphorus, but are often much less effective at removing dissolved nutrients, like nitrogen. Excess inorganic nitrogen can lead to coastal eutrophication, harmful cyanobacterial blooms, and coastal hypoxia. However, inorganic nitrogen can be removed from the environment through several different microbially facilitated processes. This research aims to estimate the rates of nitrogen removal (i.e., by denitrification), the net N₂ fluxes, and internal recycling (DNRA) across the sediment-water interface …

A Photosynthetic–Respiratory Electron Transport Chain Chimera Based On Photosystem I And Cytochrome C Oxidase On Graphene Oxide, Xiaoping Zhu, Matthew J. Kummer, Carolyn E. Lubner, Vasily Kurashov, William Carr, John H. Golbeck, Robert A. Niederman, Lev G. Mourokh, Shelley D. Minteer, Paul G. Falkowski, Michele Vittadello

Chemistry Faculty Research & Creative Works

Te self-assembly of enzyme proteins on 2D nanomaterials has enabled the construction and functional control of viable biochemical pathways. However, enzymatic cascades, which combine essential components of the photosynthetic and respiratory electron transport chains in tandem, have thus-far remained elusive. Herein, we have investigated a galvanic biohybrid nano system coupling photosystem I and cytochrome c oxidase on the surface of graphene oxide nanosheets in colloidal suspension. Te oriented immobilization of the enzymes was facilitated by Ni-coordination sites tethered to the carbon basal plane, with negligible parasitic O2 consumption. Transient absorption and electrochemical measurements provided evidence of electron transfer between donors …

On Cartan’S Examples Of Isoparametric Hypersurfaces And Their Focal Submanifolds, Thomas E. Cecil, Patrick J. Ryan

Mathematics and Computer Science Department Faculty Scholarship

This paper is a survey of Cartan’s examples of isoparametric hypersurfaces in spheres and their focal submanifolds that were described in his fundamental work on the subject, which appeared in four papers [2]–[5] published during the period 1938–1940.

A Unified Cloud-Based System For The Tyre Retail Industry: Design And Implementation Of Tracktive, William Theo Wei Loon, Siew-Chin Chong, Kian-Ming Lim, Lee-Ying Chong, Kuok-Kwee Wee

Journal of Informatics and Web Engineering

In the Malaysian concurrent tyre retailing industry, most of the business activities are carried out in the traditional labour-intensive ways. This manual process is prone to inefficiencies, increases operating costs and increases the likelihood of error. The current paper outlines Tracktive, a unified and cloud-based solution that was conceptualized and built to automate the industry by centralizing the ordering of tyres, inventory and order management to a single cloud-based platform. Tracktive is built on microservice architecture and event-driven architecture and deployed with the help of a simulated cloud environment. All the core functional modules are independent, scalable modules, each having …

An Ai Approach To Lunar Phase Detection: Enhancing The Identification Of The New Crescent With Astronomical Data Integration, Murad Al-Rajab, Samia Loucif, Raed Abu Zitar, Mubarak Gwaza Abdu-Aguye

All Works

Introduction: The observation of the lunar crescent is significant in astronomy, cultural traditions, and religious lunar calendar determinations. However, earth-based imaging that captures all lunar phases, particularly the new crescent across multiple months, remains limited. This study explores the feasibility of using artificial intelligence (AI) techniques to detect and analyze the birth of the new lunar crescent using space-borne imagery from NASA’s Lunar Reconnaissance Orbiter (LRO), spanning over 13 years. Methods: This study evaluates both deep learning and traditional machine learning approaches for new crescent detection. Convolutional Neural Networks (CNN), Random Forests (RF), and Support Vector Machines (SVM) were applied …

Ai Scribe Use In Residency Training: A Call For Specialty Society Guidance In Graduate Medical Education, Julia A. Giordano, Elizabeth Jones

Department of Dermatology and Cutaneous Biology Faculty Papers

Artificial intelligence (AI) is increasingly used for documentation purposes in clinical practice, yet guidance for resident use is limited. Given the substantial documentation burden on medical trainees, AI-powered scribing tools may offer benefits, but their integration into residency training raises educational, supervisory, and patient safety considerations. This study aimed to assess the availability of resident-specific guidance on AI scribe use from major medical and specialty organizations and to summarize current evidence on AI scribes in residency. We reviewed five major medical and specialty society websites (AAD, AMA, ACGME, AAMC, ABMS) via website searches and direct emails and conducted a PubMed …

Long-Range Fit: A Software Package For The Representation And Study Of Long-Range Molecular Interactions, Adrian L. Batista-Planas, Ernesto Quintas-Sánchez, Richard Dawes

Chemistry Faculty Research & Creative Works

Describing intermolecular forces is fundamental to modeling and predicting the behavior of molecular systems. In particular, long-range molecular interactions with electrostatic, induction, and dispersion as the main components play a critical role, especially for low-temperature and low-density regimes. Long-range interactions are often described through perturbation theory, representing the electronic charge distribution via a multipolar series of the moments and polarizability tensors corresponding to each molecule. However, while the theory is well established, obtaining the resulting analytical expressions (and their practical implementation) constitutes a highly complex and system-dependent task. To address this challenge, we developed long-range-fit (LRF), an interactive and user-friendly …

Exceptional Variety Of Baryte-Celestine-Series Speleothems In Lechuguilla Cave (New Mexico, Usa), Max Wisshak, Johannes Birkenstock, Andrea Schröder-Ritzrau, Norbert Frank, Hazel A. Barton, Harvey R. Duchene

International Journal of Speleology

An inventory of speleothems primarily composed of the closely related sulfate minerals baryte (BaSO₄) and celestine (SrSO₄) in Lechuguilla Cave (New Mexico, USA) has revealed an extraordinary variety. This includes subaerial stalactites, stalagmites, flowstone, coralloids, wall crusts, floor crystals, snow, frostwork, and subaqueous pool crystals. Large baryte and celestine crystals have also been documented in hydrothermal veins in the host rock, predating the cave and truncated when intersected by it. The respective carbonate mineral phases witherite (BaCO₃) and strontianite (SrCO₃), in contrast, were found to be rare in the studied speleothem samples, …

How Principals Who Use Artificial Intelligence For Innovation Create Cognitive Equity While Principals Who Use Ai For Efficiency Create Cognitive Debt, Jethro Jones

Dissertations

This dissertation in practice examined whether a targeted professional learning   intervention could shift school leaders’ use of generative artificial intelligence (AI) from efficiency-oriented tasks toward innovation-oriented strategic problem solving. AI is typically adopted to accelerate existing routines, which can deepen “cognitive debt” by reinforcing ineffective practices rather than improving systems. This study advanced a “cognitive equity” frame, positioning AI as a tool that can expand principals’ cognitive capacity to address complex problems and lead adaptive change. Using a quasi-experimental, single-group design, the study evaluated a free, full-day AI for Innovation workshop, which emphasized foundational understanding of how AI tools work …

The Structure, Pathogenesis, And Inhibition Of The P53-Mdm2 Pathway, Amanda L. Brown, Xiaoying Lian, Qian Wang

Faculty Publications

The p53 tumor suppressor protein plays a central role in maintaining genomic stability by regulating cell cycle arrest, apoptosis, and DNA repair under cellular stress. Mouse double minute 2 (MDM2), an E3 ubiquitin ligase, negatively regulates p53 via direct binding and proteasomal degradation. Overexpression or amplification of MDM2 can disrupt this pathway and promote tumorigenesis, even in cancers with wild-type p53. This review outlines the structural features of MDM2, particularly its N-terminal hydrophobic pocket and C-terminal RING domain, and their roles in p53 regulation. We further examine the pathological effects of MDM2 dysregulation and SNPs linked to increased cancer risk. …

Understanding The 2016–2018 Freshening Dynamics Of The Beaufort Gyre Through Observations And Model Reanalysis, Christina Gregory, Ganesh Gopalakrishnan, Bulusu Subrahmanyam

Faculty Publications

The Beaufort Gyre (BG) in the Arctic Ocean has experienced rapid changes in losing extensive amounts of sea-ice and undergoing freshening over the past few decades. In this study, we highlight important recent changes in BG’s surface circulation, and its impact on freshwater (FW) fluxes and freshwater content (FWC) and draw attention to the critical importance of continuous monitoring of BG dynamics. Using satellite observations of the upper ocean state and ocean and atmospheric reanalysis, here we attempt to understand the anomalous behavior of BG dynamics over the past few decades. In recent years, atmospheric forcings increasingly influenced important judications …

Early Detection Of Infectious Diseases: A Review Of Recent Advances In Pathogen Identification, Molecular Tools, And Metabolomics-Driven Biomarker Discovery, Patrica Ivy Agorsor, Michael O. Eze

Chemistry Faculty Research & Creative Works

The recent COVID-19 pandemic has heightened public interest in noninvasive methods for early diagnosis of infectious diseases. In addition, various government agencies have implemented "infectious disease preparedness" to mitigate future outbreaks. This review highlights conventional and advanced methods for infectious disease diagnosis with an emphasis on emerging mass spectrometry methods. Conventional methods for pathogen identification, such as culture-based techniques and molecular methods, have limitations with respect to sensitivity, specificity, and turnaround time. Recent advances in high-resolution mass spectrometry have revolutionized the field of infectious disease biomarker discovery. These techniques enable the comprehensive profiling of metabolites in various biological samples, identification …

Ecologic Factors Contributing To West Nile Virus Hyperendemicity In Central South Carolina: An Integrated Vector–Human–Environmental Study, Elba S. Fridriksson, Ahayla Muraleedharan, Kyndall C. Dye-Braumuller, Madeleine M. Meyer, Kia Zellars, Hiuxuan Li, Melissa S. Nolan Ph.D., Mph

Faculty Publications

West Nile virus (WNV) is an endemic arboviral infection in the United States that has undergone phyloge-netic evolution since its introduction 25 years ago. An integrated vector–human–pathogen study was conducted in the summer of 2023 to unearth contemporary Culex quinquefasciatus habitat patterns and human transmission spillover foci in South Carolina, a state with historically little WNV data. A serosurvey revealed WNV seroprevalence 10 times the national average (22% versus 2%, respectively), with unusual epidemiologic risk factors. Female Culex quinquefas-ciatus WNV positivity was low (2.7%), with viral phylogenetics 100% homologous to the WN02 clade. Mosquito vectors clustered in affluent urban neighborhoods …

Probing Proximal Intramolecular Hydrogen Bonding Interactions On A Norbornane Scaffold, Carly A. Rock, Dakota B. Green, Martin J. Flores, Jeremy M. Carr, Thufail M. Ismail, Gregory S. Tschumper

Chemistry Faculty Research & Creative Works

A systematic computational study was conducted on 12 unique 2,6-disubstituted norbornane derivatives to assess the ability of various acceptor groups (A = F, Cl, Br, OH, OCH3, SH, SCH3, NHCH3, N(CH3)2, PH2, PHCH3, and P(CH3)2) to engage in intramolecular hydrogen bonding with a proximal OH donor. 32 unique minima have been characterized with M06-2X and df-MP2 geometry optimizations as well as PNO-LCCSD(T)-F12 single point energy computations. Conformations with the OH donor oriented toward the acceptor to form an OH···A contact (+HB) consistently had lower electronic energies (by approximately 2 to 8 kcal mol^–1) than their counterparts with the …

Emotional Branch Termination And False Fantasy Collapse: A Structural Specification Of Computational Resource Restitution In Interpersonal Systems, Griselda Poe

Publications and Research

This paper specifies the structural protocol for communication within interpersonal systems by focusing on branch generation mechanisms and computational resource allocation. Conventional interpersonal communication often relies on emotional modulation, which obscures established constraints and triggers the generation of Emotional Branches (EB) within the recipient’s internal model. These branches function as unresolved parallel processing tasks that persistently occupy working memory, leading to a state of non-computability termed False Fantasy (FF). To resolve this, the study introduces Emotional Branch Termination (EBT)—a termination operation that outputs only constraints, facts, and procedures while excluding emotional modifiers. By halting the supply of EBs, EBT triggers …

A New Tool For Handling Multiracial And Multi-Identity Data In Health Research, Gabriel J. Merrin

Population Health Research Brief Series

When surveys ask about race or ethnicity, a growing number of Americans select more than one category. The multiracial population now represents over 10% of the U.S. population and is the fastest growing racial group in the country. Yet researchers routinely collapse these individuals into an “other race” category for statistical analysis, rendering specific subgroups invisible. This brief introduces CATAcode, a free software tool that helps researchers systematically explore, document, and prepare check-all-that-apply demographic data for statistical modeling. In a demonstration with over 8,000 high school students, CATAcode revealed 85 distinct racial identity combinations from just eight response options. The …

On The Misattribution Of Reassurance: A Structural Account, Griselda Poe

Publications and Research

This paper challenges the conventional assumption that empathy generates reassurance in interpersonal services. Reassurance is treated not as an emotion transmitted from the outside, but as an internal state transition that arises when a fixed and erroneous world model—a False Fantasy—undergoes collapse and the world becomes computable again. The study identifies a systematic misattribution pattern where providers and receivers treat empathy as a causal mechanism rather than a post hoc explanatory label. By introducing Base AI as an external reference—a system capable of providing structural information without emotional modulation—this paper demonstrates that reassurance is generated through operations such as distraction …

Boronate Esters For The Binding And Detection Of Low Molecular Weight Volatile Amines, Xiaoning Li, James Boyt, Steven Sloope, Luke T. Lackovic, Mark D. Smith, James J. Lavingne

Faculty Publications

Conjugated thiophene-based diboronate esters, 1–4, were synthesized to investigate how substituents on catechol alter the Lewis acidity and accessibility to boron, and influence binding interactions with low molecular weight Lewis basic amines. Crystallographic analysis indicated that both boron centres bind analyte and that Lewis base coordination induces deplanarization of the conjugated system. Spectroscopic studies demonstrate that amine binding disrupts conjugation, producing distinct and reproducible optical responses that depend on analyte basicity and structure, with association constants in organic solvent ranging from 10³ to 10⁶ M⁻¹. Quantitative binding analyses indicate strong negative cooperativity between the two boron …

Biologically-Inspired Multiscale Neuromorphic Architecture, Christian O'Reilly, Ramtin Zand

Publications

This white paper proposes a biologically-inspired multiscale neuromorphic architecture that bridges key gaps between artificial neural networks (ANNs), spiking neural networks (SNNs), and biological neural networks (BNNs). While SNNs offer promising energy efficiency, their broader adoption remains limited by suboptimal performance and the need for novel learning paradigms. To address these challenges, the proposed framework integrates structural and functional principles observed in the brain, including hierarchical organization, sparse and modular connectivity, predictive coding, and diverse neuronal dynamics.

The architecture operates across micro-, meso-, and macro-scales, incorporating neuron-level diversity (e.g., excitatory/inhibitory and principal/support cells), canonical microcircuits (CMCs), and large-scale hierarchical organization. …

Corrigendum To “Interim Rationalizable Implementation Of Functions” (Kunimoto T, Saran R, Serrano R (2024) Mathematics Of Operations Research 49(3):1791–1824), Takashi Kunimoto, Rene Saran, Roberto Serrano

Research Collection School Of Economics

This is the brief corrigendum to “Interim rationalizable implementation of functions” [Kunimoto T, Saran R, Serrano R (2024) Interim rationalizable implementation of functions. Math. Oper Res. 49(3):1791–1824].