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Understanding Polycyclic Aromatic Hydrocarbon Degradation By Soil Microbial Communites: The Concentration And Distribution Of Aromatic Dioxygenase Genes, Inigo Walker Howlett

Masters Theses and Doctoral Dissertations

The ability to individually identify and enumerate bacterial genes in the environment is an important development in the field of microbial ecology. Researchers are now able to quantify and map populations and communities, the presence of which could only be inferred until recently. Knowledge of this ecology is critical to understanding microbial responses to environmental pollutants, thereby contributing information useful in devising and monitoring bioremediation strategies. The following thesis therefore compares two aromatic dioxygenase genes, nidA and nahAc, which confer the ability for the bacteria carrying the genes to metabolize polycyclic aromatic hydrocarbons (PAHs), persistent pollutant byproducts of coal coking. …

Differential Response Of Amp Activated Protein Kinase (Ampk) And Hsp70 To Temperature Stress In The Gastropod, Nucella Lapillus, Emily Zimmermann

All Theses And Dissertations

Populations of the gastropod Nucella lapillus are polymorphic for shell color, with light-colored shells predominating on warmer, wave-protected shores and dark-colored shells limited primarily to cooler, wave-exposed shores. During thermal stress, darker shells attain higher body temperatures than lighter shells. These results suggest that heat stress may determine field distribution patterns. However, there is currently little evidence of physiological consequences of thermal stress in these organisms. Following the guiding hypothesis that heat stress leads to cellular energy depletion, we explored whether the central energy regulator AMP-activated Protein Kinase (AMPK) is activated by heat stress. We compared this response in both …

Historical Review Of Elk–Agriculture Conflicts In And Around Riding Mountain National Park, Manitoba, Canada, Ryan K. Brook

Human–Wildlife Interactions

Conflicts between elk (Cervus elaphus) and farmers have been occurring since the 1880s when agriculture began around what is now Riding Mountain National Park (RMNP). Initially, the conflicts were related to low elk numbers caused primarily by unregulated harvest of elk. The creation of RMNP in 1930 and the associated ban on hunting allowed elk numbers to reach critically high levels. Since farming began, elk have been associated with considerable damage to fences and crops around RMNP, with annual damage often >$240,000. Hunting on agricultural lands has been the most common approach to mitigating elk impacts, despite its limited success. …

A Review Of The Potential Of Fertility Control To Manage Brushtail Possums In New Zealand, Weihong Ji

Human–Wildlife Interactions

Brushtail possums (Trichosurus vulpecula) were introduced into New Zealand from Australia in the mid-1800s and became a major invasive pest. They damage native biodiversity by browsing and predation, and they are a disease risk to the livestock industry by acting as vectors of bovine tuberculosis (TB). Management of possums includes their eradication from some offshore islands and control by trapping, shooting, and poisoning on the mainland. Possums have been eradicated successfully from some islands and greatly reduced in abundance in other areas of high conservation value or where they are infected with TB. However, possums are still at …

Methods To Quantify Variable Importance: Implications For Theanalysis Of Noisy Ecological Data, Kim Murray, Mary M. Conner

Wildland Resources Faculty Publications

Determining the importance of independent variables is of practical relevance to ecologists and managers concerned with allocating limited resources to the management of natural systems. Although techniques that identify explanatory variables having the largest influence on the response variable are needed to design management actions effectively, the use of various indices to evaluate variable importance is poorly understood. Using Monte Carlo simulations, we compared six different indices commonly used to evaluate variable importance; zero-order correlations, partial correlations, semipartial correlations, standardized regression coefficients, Akaike weights, and independent effects. We simulated four scenarios to evaluate the indices under progressively more complex circumstances …

Fisheries Research Report No. 183 - Development Of A Long-Term Program To Monitor Coastal Communities Within The Swan Region, Lynda M. Bellchambers

Fisheries Research Reports

Marine benthic communities along the metropolitan coast of Western Australia are varied and unique. The southward flowing Leeuwin Current brings warm water and tropical recruits whilst the cooler counter current, the Capes Current, brings the temperate recruits. The result is a mosaic of tropical species intermingled with the dominant temperate species. These areas sustain varied fish and invertebrate communities making this coast a highly desirable location for recreational and commercial use. Management strategies are in place that attempt to maintain the sustainability of this area including various fishery restrictions and the implementation of areas zoned as sanctuary zones (no-take). However, …

Non-Destructive Estimation Of Anthocyanins And Chlorophylls In Anthocyanic Leaves, Anatoly A. Gitelson, Olga B. Chivkunova, Mark N. Merzlyak

School of Natural Resources: Faculty Publications

The anthocyanin and chlorophyll contents in leaves provide valuable information about the physiological status of plants. Thus, there is a need for accurate, efficient, and practical methodologies to estimate these biochemical parameters of vegetation. In this study, we tested the performance and accuracy of several nondestructive, reflectance-based techniques for estimating anthocyanin and chlorophyll contents in leaves of four unrelated species, European hazel ( Corylus avellana ), Siberian dogwood ( Cornus alba = Swida alba ), Norway maple ( Acer platanoides ), and Virginia creeper ( Parthenocissus quinquefolia ), with widely variable pigment content and composition. An anthocyanin reflectance index, which …

Modeled Red Spruce Distribution Response To Climatic Change In Monongahela National Forest, James Michael Stanton

Theses, Dissertations and Capstones

In Monongahela National Forest of West Virginia, red spruce grows in high-elevation island ecosystems that are particularly sensitive to changes in climatic conditions. The ecological niche modeling application Maxent was used to project the distribution response of red spruce to climatic change for the purposes of conservation planning. Red spruce distribution data was acquired from the United States Forest Service. Three sets of nineteen bioclimatic variables, corresponding to present, 2050, and 2080 conditions, were derived from 1961-1990 monthly temperature and precipitation means and the IPCC A2 emissions scenario of HadCM3. The modeling revealed rapidly diminishing red spruce habitat suitability from …

Sustainable Trail Management: A Transdisciplinary Approach, Sinead O'Connor-Gotra

Theses, Doctoral

The research reported has created a holistic model for sustainable trail management that is broader than the quantitative assessment of ecological trail degradation. The range of quantitative and qualitative results gathered show that a more realistic treatment of sustainable trail management needs is achieved through a qualitative, participative and flexible research process. The investigation focuses primarily on the assessment of trail degradation in the uplands of Co. Wicklow, Ireland where signs of deterioration have been observed as a consequence of recreational use. The nature and extent of trail degradation was assessed using a variety of techniques including qualitative and quantitative …

Scaling Of Feesing Behavior And Performance In The Goliath Grouper, Epinephelus Itajara, Michelle Riggs

Mahurin Honors College Capstone Experience/Thesis Projects

Scaling is defined as the changes related to body size an animal undergoes during its life history. This change in body size can have implications for habitat use, prey consumed, and predatory threats, among others. The goliath grouper, Epinephelus itajara, undergoes one of the greatest amounts of scaling of any animal known, growing from 3mm at hatching to 2.3 m as adults. This tremendous change has implications for their development and niche as a top-level predator in their habitats. However, the consequences of their drastic change in body size for feeding performance have never been quantified. Here, a juvenile goliath …

Development And Application Of Dna Techniques For Validating And Improving Pinniped Diet Estimates, Dominic J. Tollit, Angela D. Schulze, Andrew W. Trites, Peter F. Olesiuk, Susan J. Crockford, Thomas S. Gelatt, Rolf R. Ream, Kristina M. Miller

United States Department of Commerce: Staff Publications

Polymerase chain reaction techniques were developed and applied to identify DNA from .40 species of prey contained in fecal (scat) soft-part matrix collected at terrestrial sites used by Steller sea lions (Eumetopias jubatus) in British Columbia and the eastern Aleutian Islands, Alaska. Sixty percent more fish and cephalopod prey were identified by morphological analyses of hard parts compared with DNA analysis of soft parts (hard parts identified higher relative proportions of Ammodytes sp., Cottidae, and certain Gadidae). DNA identified 213 prey occurrences, of which 75 (35%) were undetected by hard parts (mainly Salmonidae, Pleuronectidae, Elasmobranchii, and Cephalopoda), and …

Biofuels: Cultivating Energy, Not Invasive Species

National Invasive Species Council

To provide alternatives to petroleum-based energy, the United States (U.S.) government has mandated a greater proportion of plant-based biofuels be integrated into its energy portfolio. However, certain plant species being proposed for biofuel production in the U.S. are invasive species or are likely to escape cultivation and become invasive.

U.S. Executive Order (E.O.) 13112¹ defines invasive species as “alien [non-native] species whose introduction does or is likely to cause economic or environmental harm or harm to human health” and states:

“Each Federal agency whose actions may affect the status of invasive species shall, to the extent practicable and permitted …

Rapid Recovery Of A Coral Reef At Darwin Island, Galapagos Islands, Peter W. Glynn, Bernhard Riegl, Adrienne M. S. Correa, Iliana B. Baums

Marine & Environmental Sciences Faculty Articles

Surveys at Darwin Island in 2006 and 2007 have demonstrated that this northernmost Galapagos Islands coral reef has recovered significantly since the 1982–3 El Niño event. When first surveyed in 1975, this structural reef exhibited actively accreting frameworks of pocilloporid and poritid corals. The coral suffered severe mortality in 1983, resulting in the near total loss of pocilloporids and extensive partial mortality of poritid corals. Large sections of the reef had not recovered by 1992 and dead frameworks were subject to bio-erosion, although small numbers of sexual recruits of pocilloporid corals and numerous recruits plus regenerating patches of Porites lobata …

Subarctic Atmospheric Aerosol Composition: 2. Hygroscopic Growth Properties, Hanna Herich, Lukas Kammermann, Beth Friedman, Deborah S. Gross, Ernest Weingartner, Ulrike Lohmann, Peter Spichtinger, Martin Gysel, Urs Baltensperger, Daniel J. Cziczo

Chemistry Faculty Work

Subarctic aerosols were sampled during July 2007 at the Abisko Scientific Research Station Stordalen site in northern Sweden with an instrument setup consisting of a custombuilt Hygroscopicity Tandem Differential Mobility Analyzer (HTDMA) connected in series to a single particle mass spectrometer. Aerosol chemical composition in the form of bipolar single particle mass spectra was determined as a function of hygroscopic growth both in situ and in real time. The HTDMA was deployed at a relative humidity of 82%, and particles with a dry mobility diameter of 260 nm were selected. Aerosols from two distinct air masses were analyzed during the …

Avian Use Of Harvested Crop Fields In North Dakota During Spring Migration, Alegra M. Galle, George M. Linz, H. Jeffrey Homan, William J. Bleier

United States Department of Agriculture Wildlife Services: Staff Publications

Broad-spectrum herbicide applications and improved harvesting efficiency of crops have reduced the availability of weed seeds and waste grains for game and nongame wildlife. Over the last decade, corn and soybean plantings have steadily increased in the Prairie Pothole Region (PPR) of North Dakota, while sunflower plantings have declined. The PPR is an important corridor for migratory birds, and changes in food availabilities at stopover habitats may affect how food resources are used. In early spring 2003 and 2004, we compared bird use of harvested fields of sunflower, soybeans, small grains, and corn in the PPR of North Dakota. Across …

Accounting For Uncertainty In Ecological Analysis: The Strengths And Limitations Of Hierarchical Statistical Modeling, Noel Cressie, Catherine A. Calder, James S. Clark, Jay M. Ver Hoef, Christopher K. Wikle

United States Department of Commerce: Staff Publications

Analyses of ecological data should account for the uncertainty in the process(es) that generated the data. However, accounting for these uncertainties is a difficult task, since ecology is known for its complexity. Measurement and/or process errors are often the only sources of uncertainty modeled when addressing complex ecological problems, yet analyses should also account for uncertainty in sampling design, in model specification, in parameters governing the specified model, and in initial and boundary conditions. Only then can we be confident in the scientific inferences and forecasts made from an analysis. Probability and statistics provide a framework that accounts for multiple …

Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen

Biological Sciences Faculty Publications

As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …

The Role Of Climate Variability And Riverine Pulsing In The Community Dynamics Of Estuarine Nekton In Breton Sound, Louisiana, Bryan Patrick Piazza

LSU Doctoral Dissertations

Climate controls biotic community composition at multiple spatiotemporal scales through variability in environmental control mechanisms (assembly filters). This research investigated the role of climate variability in the community dynamics of estuarine nekton in Breton Sound estuary, Louisiana, and, specifically the effects of El Niño Southern Oscillation (ENSO), freshwater discharge, and a tropical cyclone. A teleconnection was found between ENSO and juvenile brown shrimp (Farfantepenaeus aztecus) abundance in Breton Sound from 1988 – 2007. ENSO affected winter weather conditions (air pressure, temperature and precipitation), and spring brown shrimp abundance in Breton Sound. Juvenile brown shrimp abundance lagged ENSO by …

Soil Carbon And Nitrogen Accumulation In A Forested Debris Flow Chronosequence, California, Judith K. Turk, Robert C. Graham

Conservation and Survey Division: Faculty and Staff Publications

The role of forest soils in the biogeochemical cycling of C and N is most dynamic during the early stages of soil development. To define C and N trends that occur with soil development in a mixed coniferous forest, a chronosequence formed by debris flows was studied. The accumulation rates of total organic C (TOC) and total N (TN) were evaluated in soils on 10 debris flow deposits, ranging from depth, since this was the depth of the shallowest debris flows. Carbon was found to accumulate in the organic horizons at a rate of 26.5 g m⁻² yr^{−1 …}

Options For The Control Of Disease 3: Targeting The Environment, Alastair Ward, Kurt C. Vercauteren, W. David Walter, Emmanuellle Gilot-Fromont, Sophie Rossi, Gareth Edwards- Jones, Mark S. Lambert, Michael R. Hutchings, Richard J. Delahay

United States Department of Agriculture Wildlife Services: Staff Publications

Management of wildlife disease can be targeted at pathogens, hosts or vector populations, but may also focus on the environment. As constituent elements of any given environment, resident wildlife populations, and their pathogens, may be profoundly influenced by environmental change, in terms of their abundance, distribution and behavior. Hence, it is reasonable to expect that incorporation of environmental manipulation into a program to control wildlife diseases may potentially result in outcomes as effective as direct intervention aimed at hosts, pathogens and vectors.

Response Of Sandhill Crane (Grus Canadensis Riverine Roosting Habitat To Changes In Stage And Sandbar Morphology, Paul Kinzel, Jonathan Nelson, Ashley Heckman

United States Geological Survey: Staff Publications

Over the past century, flow regulation and vegetation encroachment have reduced active channel widths along the central Platte River, Nebraska. During the last two decades, an annual program of in-channel vegetation management has been implemented to stabilize or expand active channel widths. Vegetation management practices are intended to enhance riverine habitats which include nocturnal roosting habitat for sandhill cranes. Evaluating the success of other management treatments such as streamflow modification requires an understanding of how flow shapes the sandbars in the river and how sandbar morphology interacts with flow to create crane habitat. These linkages were investigated along a 1-km …

Intraspecific Comparison Of Population Structure, Genetic Diversity, And Dispersal Among Three Subspecies Of Townsend’S Big-Eared Bats, Corynorhinus Townsendii Townsendii, C. T. Pallescens, And The Endangered C. T. Birginianus, Antoinette J. Piaggio, Kirk W. Navo, Craig W. Stihler

United States Department of Agriculture Wildlife Services: Staff Publications

Townsend’s big-eared bat, Corynorhinus townsendii, is distributed broadly across western North America and in two isolated, endangered populations in central and eastern United States. There are five subspecies of C. townsendii; C. t. pallescens, C. t. australis, C. t. townsendii, C. t. ingens, and C. t. virginianus with varying degrees of concern over the conservation status of each. The aim of this study was to use mitochondrial and microsatellite DNA data to examine genetic diversity, population differentiation, and dispersal of three C. townsendii subspecies. C. t. virginianus is found in isolated populations in the eastern United States and …

Finicky Fish Finish... Last! On-Site Programming (Grade 5), Discover Mojave: Forever Earth

Curriculum materials (FE)

In “Finicky Fish Finish…Last!” students explore what has happened to the Colorado River and the reasons why it is so difficult for the razorback sucker to thrive in a changed environment. Working as ichthyologists (fish biologists) at Lake Mead, students collect water quality data such as temperature, pH, and clarity -- to determine whether current habitat conditions are sufficient for survival of young razorback suckers. Students observe and identify non-native fish in Lake Mead as they learn how the razorback sucker interacts with these neighbors. Students assess whether Lake Mead is still a good habitat for razorback suckers. Using the …

The Influence Of Fallback Foods On Great Ape Tooth Enamel, Paul J. Constantino, Peter W. Lucas, James J.-W. Lee, Brian R. Lawn

Biological Sciences Faculty Research

Lucas and colleagues recently proposed a model based on fracture and deformation concepts to describe how mammalian tooth enamel may be adapted to the mechanical demands of diet (Lucas et al.: Bioessays 30[2008] 374-385). Here we review the applicability of that model by examining existing data on the food mechanical properties and enamel morphology of great apes (Pan, Pongo, and Gorilla). Particular attention is paid to whether the consumption of fallback foods is likely to play a key role in influencing great ape enamel morphology. Our results suggest that this is indeed the case. We also consider the implications of …

Microbial Communities And Associated Mineral Fabrics In Altamira Cave, Spain, Soledad Cuezva, Sergio Sanchez-Moral, Cesareo Saiz-Jimenez, Juan Carlos Cañaveras

International Journal of Speleology

Evidences of microbial colonizations were observed in Altamira Cave, Spain. These consisted of distinct small coloured colonies, both on walls and ceiling, mainly located in the area near the cave entrance, which progressed until reaching the Polychromes Hall. The colonizations were characterized by a high morphological and microstructural variability and related to biomineralization processes. Two main types of CaCO₃ deposits were related to the colonies: rosette- or nest-like aggregates of rhombohedral calcite crystals, and spheroid to hemispheroid CaCO₃ elements. Colonies distribution seems to be controlled by microenvironmental conditions inside the cavity. The areas of the cave showing higher …

Supercritical Fluid Extraction And Analysis Of Plant Oils, Tianchuan Du

LSU Master's Theses

Supercritical fluid extraction (SFE) of oxeye daisy (Chrysanthemum leucanthemum L.) seed, heartwood of Port-Orford cedar (POC) (Chamaecyparis lawsoniana), Alaska yellow cedar (AYC) (Chamaecyparis nootkatensis), and Eastern red cedar (ERC) (Juniperus virginiana L), and Chinese tallow (Sapium sebiferum L. Roxb. ) seed was investigated in this study and compared with other extraction methods. For the oxeye daisy seed extraction, Soxhlet extraction (SE) with hexane, microwave assisted extraction (MAE), and supercritical fluid extraction (SFE) were conducted. The results showed that as the extraction temperature decreased from 100 °C, the extraction rate increased until 30 °C using SFE. With an increase of extraction …

Measurement Of Fine Spatial Scale Ecohydrologic Gradients In A Pinyon-Juniper Ecosystem, Matthew David Madsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

With the dramatic expansion of pinyon-juniper woodlands over the last century, improved understanding of how these woodlands modify infiltration properties is needed, in order for land managers to make informed decisions on how to best manage their specific resources. However, current methods for measuring soil infiltration are often limited by low sample sizes and high experimental error, due to constraints associated with remote, non agricultural settings. This thesis first presents a scheme for automating and calibrating two commercially available infiltrometers, which allows collection of a large number of precise unsaturated infiltration measurements in a relatively short period of time. Secondly, …

Gully Control On The Sumter National Forest In S.C., William F. Hansen, Dennis L. Law

S.C. Water Resources Conference

2008 S.C. Water Resources Conference - Addressing Water Challenges Facing the State and Region

Enabling Broadband Data Access For The Digital Watershed With Heterogenous Wireless Networks, Gayatri Venkatesh, Kuang-Ching Wang, Christopher Post

S.C. Water Resources Conference

2008 S.C. Water Resources Conference - Addressing Water Challenges Facing the State and Region

Overview Of Stable Isotope Results From A Comprehensive Savannah River Study, Oscar Flite, Gene Eidson, Jason Moak, Brian Metts, Stephen Sefick

S.C. Water Resources Conference

2008 S.C. Water Resources Conference - Addressing Water Challenges Facing the State and Region