Digital Commons Network^™

Development And Validation Of Rapid Edna Detection Method For Yellow Mud Turtle, Kinosternon Flavescens: A Field Study In South Texas, Usa, Sakib Tahmid Rishan, Richard Kline, Md Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The conservation of freshwater turtle species depends on precise and effective monitoring techniques. Environmental DNA (eDNA) analysis is a potential method for identifying cryptic and elusive turtle species in aquatic ecosystems. eDNA analysis can help to identify key regions for conservation efforts and monitor changes in population levels over time. This study aims to evaluate the effectiveness of a rapid eDNA detection method for the yellow mud turtle (Kinosternon flavescens, an indicator species that is endangered in some states in the USA), which inhabits local oxbow lakes (e.g., resacas) in Cameron County, South Texas. A species-specific nested PCR …

Spatiotemporal Variation Of Vegetation Cover In Mining Areas Of Ysr Kadapa District, Andhra Pradesh Using Remote Sensing And Gis, Vinod Kumar Yarlanki, Prudhvi Raj Muppala, Prem Kumar Yasam, Balaji Gollapudi, Sumanth Moddu, Appanna Besta

Journal of Sustainable Mining

The spatiotemporal variation of vegetation cover in the mining areas of YSR Kadapa district, Andhra Pradesh, using Remote Sensing and GIS techniques. By focusing on the years 2014, 2018, and 2023, the analysis provides insights into changes observed in water bodies, bare soil, sparse vegetation, moderate vegetation, and dense vegetation. The results reveal dynamic trends in land cover categories, highlighting the environmental impact of mining activities in the region. A significant decline in water bodies is observed, with the area reducing from 3.48 km² in 2014 to 1.91km² in 2023. This decrease raises concerns about the potential degradation …

Sptiotemporal Changes In Aboveground Biomass, Canopy Cover And Livestock Movements Across Mongolia Grasslands, Abhinav Chandel

Dissertations and Theses

This study presents an integrated geospatial framework for understanding grassland productivity dynamics and livestock movement behavior across the Mongolian steppe. Mongolia’s grasslands constitute one of the world’s largest pastoral ecosystems, yet they face increasing vulnerability due to climate variability, overgrazing, and land degradation. To quantify vegetation change and grazing responses, this research combines multi-decadal remote sensing with high-frequency GPS-based livestock movement tracking. Using Landsat imagery from 1990 to 2023, Aboveground Biomass (AGB) and Canopy Cover (CC) were estimated through Random Forest regression models integrating key spectral vegetation indices (e.g., NDVI, OSAVI, CTVI, TNDVI, IPVI) and climatic predictors such as summer …

Predicting Capture And Survival Probabilities Of The Arizona Tiger Salamander: A Comparison Of Capture-Recapture Models, Brittney Nelson

Murray State Theses and Dissertations

Capture-recapture models are essential tools for estimating population dynamics in ecological studies. A fundamental component of these models is the capture history matrix, which records individual detection over time and serves as the basis for estimating survival and capture probabilities. This presentation explores three statistical approaches to these estimations: the Cormack-Jolly-Seber (CJS) model, the Hidden Markov Model (HMM) for CJS, and the Bayesian CJS model. The CJS model provides a likelihood-based framework for estimation, and the HMM CJS incorporates latent states into the model to account for uncertainty in detection. The Bayesian CJS extends this same analysis by integrating prior …

The Effects Of Return To Prairie In Barber County, Kansas: A Case Study Using Ndvi And Dendrochronology, Elijah O. Joy

Master's Theses or Doctor of Nursing Practice

This study aims to evaluate the impact of prairie restoration efforts in Barber County, Kansas, with a focus on removal of Eastern Red Cedar. Restoration effectiveness was assessed using remote sensing of satellite scenes via NDVI, density analysis, and dendrochronological methods. The tree density analysis revealed a 66% reduction across the study area and a 99% reduction in the fully restored zones. NDVI analysis from 2010 to 2024 showed higher summer vegetation health and seasonal fluctuations influenced by climate variability and fire events. Dendrochronological data from tree cores reveals growth patterns and establishes a baseline for future dendrochronological chronologies. The …

Scientific Writing: A Guide From Data To Draft, Kristin M. Klucevsek

Open Education Materials

Textbook for ENGL302W (Scientific Writing)

CC BY-NC-SA (2025)

Metabarcoding-Biomass Relationships And Internal Standards For Quantitative Dna Metabarcoding, Frances Webber

Open Access Master's Theses

DNA metabarcoding has been widely adopted due to its power in investigating the composition of protistan communities, accurately identifying even small and cryptic taxa. However, the compositional nature of DNA metabarcoding results, and the distortion of natural abundances due to variation of the often-used 18S rRNA gene copy number over several orders of magnitude, renders these results semi-quantitative at best, limiting the application of DNA metabarcoding to ecological study. Here, we constructed mock communities from uni-algal cultures of taxonomically diverse phytoplankton and conducted metabarcoding using multiple primer sets and both DNA and cDNA as PCR templates. For each culture, chlorophyll …

Fire And Mammal Herbivory On Arthropods In The Protected Savannas: A Systematic Review, Ludzula Mukwevho, Mduduzi Ndlovu, Frank Chidawanyika

All Peer-Reviewed Publications

Protected areas in the savannas are key global reserves for biological diversity, including arthropods. Fire and mammal herbivory disrupts the diversity of biological organisms that alternately affects the functioning of the ecosystem. The study presents a global synthesis review of arthropod responses to varying intensities of fires and mammal herbivory in the protected savannas. We hypothesise that the intensity of predetermined fires and mammal herbivory has cascading impacts on abundance, species richness and diversity of terrestrial arthropods in the protected savannas. A minimum selection criteria was used to collate relevant literature from electronic databases of previous studies performed in the …

An Understanding Of The Feeding Ecology Of Teleoceras Fossiger And Teleoceras Aepysoma Using Dental Microwear And Mesowear Analysis, Gabriel S. Goncalves

Master's Theses or Doctor of Nursing Practice

Teleoceras is a genus of rhinocerotids that belongs to the Tribe Teleoceratines and was widespread across North America from the late Early Miocene into the Early Pliocene. This genus was very successful, spreading across the continental United States from Florida and Tennessee to California and Washington state down to central Mexico and Honduras. Teleoceras is characterized by having a large, rounded chest cavity and short limbs with relatively high crowned teeth and lower incisors modified into tusk-like teeth. Initial ecological comparisons were made to the modern hippopotamus based on proportions of the chest cavity and its hypsodont dentition. Stable carbon …

Leaf Classification Using Convolutional Neural Networks And Vision Transformers, Louis Wilkie

ICT

This study investigates deep learning techniques for plant image classification using four publicly available datasets: Folio, Flavia, Swedish, and Sugarcane. Three modelling approaches—Convolutional Neural Networks (CNN), Vision Transformers (ViT), and hybrid CNN-ViT ensembles—are evaluated. Models leverage PyTorch implementations and pretrained weights from the Hugging Face hub, with hyperparameter tuning applied to optimize accuracy. Transfer learning with pretrained ViT models achieved the highest performance, attaining 100% accuracy on Folio, Flavia, and Swedish datasets, and 94.07% on Sugarcane. CNN and CNN-ViT models showed comparable results, but pretrained CNN-ViTs were more resource-efficient. The findings highlight the importance of evaluating multiple pretrained architectures to …

Impacts Of Southern Pine Beetle (Dendroctonus Frontalis Zimmerman) On Loblolly Pine (Pinus Taeda L.) Canopy And Water Use In The Homochitto National Forest, Mississippi, Usa, Sasha Goodnow, Yun Yang, Hui Liu, Ashley Schulz

Endeavors: Mississippi State Undergraduate Research Journal

Abiotic and biotic forest disturbances can have many impacts to forest ecosystem services, including to forest water use. Studies on impacts to forest evapotranspiration have been conducted on the mountain pine beetle (Dendroctonus ponderosae) in western North America, but not on the southern pine beetle (Dendroctonus frontalis), which is a native pest of loblolly pine (Pinus taeda) and shortleaf pine (Pinus echinata), in the southeastern United States. Stressed pine trees produce pheromones that attract southern pine beetles and, with enough stressed trees, beetle populations can quickly grow to epidemic levels and attack healthy trees, which results in widespread tree mortality. …

Using Landscape Ecology And Spatial Statistics To Examine The Impacts Of Proposed Removals To Natural Heritage System And The Agricultural System Of Ontario’S Greenbelt, Brianna Downey

Theses and Dissertations (Comprehensive)

The 2022 proposed removals from the Greater Toronto Area (GTA), Southern Ontario’s Greenbelt would have resulted in negative impacts including, reductions to the size and functionality of the Agricultural System and Natural Heritage System, which are components of protected Greenbelt area. Several removal sites were located either on or in close proximity to corridor areas of the NHS, reducing connectivity and negatively impacting the surrounding ecological area. The removal of Agricultural land primarily consisted of corn and soybeans, as well as large removals of woodland, wetland, and shrubland class areas. The removal sites on local Agricultural composition and configuration were …

Carbon Dynamics Across The Mangrove-Tidal Flat Ecotone In A Tropical Seascape, E. S. Yando, I. J.B. Alemu, L. Kiah Eng, T. M. Sloey, M. Van Breugel, Bhatia N. Friess

Biological Sciences Faculty Publications

Mangroves and other blue carbon ecosystems are important for climate through the storage and sequestration of carbon. Most research estimates carbon dynamics by subsampling central portions of the ecosystem and are then upscales using habitat maps to patch, landscape, or regional levels. However, heterogeneity is rarely accounted for - particularly at edges. Further, adjacent tidal flat ecosystems have only recently been considered for carbon storage, but may be undervalued if areas where they transition with vegetated systems are not accounted for. To address the lack of information at coastal ecotones, we examined both soil carbon storage and carbon dioxide flux …

Binoculars To Bytes: Development And Field Validation Of An Ai-Driven System For Avian Monitoring, Christian J. Dupree

Graduate Student Theses, Dissertations, & Professional Papers

Autonomous camera-trap arrays coupled with artificial-intelligence (AI) vision can lift bird monitoring beyond the spatial, temporal, and labor limits of traditional field surveys. We present Binoculars to Bytes (B2B), an open-source pipeline that turns 180–360° time-lapse imagery into analysis-ready avian data. At Freezout Lake Wildlife Management Area (Montana, USA) the system ran four-hour morning deployments during spring and fall migrations (2023–2024). A YOLO-NAS detector, incrementally refined with a “Specialized Localized Iterative Model” workflow, quadrupled local accuracy and, after confidence-based species-binning, cut false-positive rates in half. Daily AI species lists were benchmarked against contemporaneous eBird citizen-science checklists and recovered ≥ …

Health Risk Assessment Of Copper Exposure Through Hand-To-Mouth Activities In The Lithium-Ion Battery Manufacturing Industry, Adisorn Phungkum, Worawat Meevasana, Khanidtha Marungrueang

Applied Environmental Research

This study aims to evaluate the occupational exposure levels of copper (Cu) among workers in a battery manufacturing facility by analyzing the Cu concentrations on hand surfaces at three distinct time periods: before work (BW), before lunch (BL), and after work (AW). A total of 30 workers involved in 13 different workstations or tasks—such as battery cell preparation, spot welding, soldering, and labeling—were included in the study to reflect diverse exposure scenarios. Surface wipe sampling was conducted according to NIOSH Method 9102, and the Cu concentrations were quantified via inductively coupled plasma‒mass spectrometry (ICP‒MS). Additionally, the hazard quotient (HQ) was …

Investigation And Health Risk Assessment Of Indoor And Outdoor Nitrogen Dioxide At Preschools In Haze Areas Of Lampang Province And Industrial Areas Of Rayong Province, Thailand, Susira Bootdee, Sawaeng Kawichai, Suganya Phantu, Sopittaporn Sillapapiromsuk

Applied Environmental Research

Nitrogen dioxide (NO2) is a major indoor air pollutant and a significant ambient air contaminant associated with health effects, especially for students and teachers who attend schools in the areas of traffic, roads and industry. This study aims to assess the impacts of NO2 exposure on the health of students in haze and industrial areas from November 2023 to March 2024. Researchers utilized tube-type passive samplers to collect indoor and outdoor NO2 samples, which were subsequently analyzed via spectrophotometry. The results revealed that the weekly mean indoor and outdoor NO2 concentrations in the haze areas (HA1–HA5) ranged between 4.4–29.0 and …

Assessing Arbuscular Mycorrhizal Fungal Community Composition And Diversity Across A Land-Use Gradient In Eastern Washington Prairies, Katherine I. Cole

EWU Masters Thesis Collection

Arbuscular mycorrhizal fungi (AMF) are key to healthy, functioning terrestrial ecosystems worldwide. Associating with over 80% of all extant land plants, they play a pivotal role in nutrient cycling, and contribute to overall plant health. Given their significance to terrestrial ecosystems, AMF have a crucial role to play in the successful restoration of Eastern Washington’s native prairies. However, AMF community composition is significantly altered by the commercial agricultural practices used extensively in this region for over 100 years. The Eastern Washington University (EWU) Prairie Restoration Project aims to restore ~120 acres of farmland to native prairie. This research provides insight …

Neural And Computational Approach To Understanding Environmental Modulation Of Behavioral Identity In Zebrafish, John W. Hageter

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms rely on behavior for survival. Animals engage in behaviors that allow for feeding, mating, exploring and navigating their environment among others. Necessary for these behaviors to develop are the environmental factors and underlying circuitry which make behavior possible. Specifically, how the environment guides underlying neural circuitry to develop unique facets or phenotypes of a larger behavior are key to understanding why unique behaviors exist. In this thesis, I build foundational evidence for determining these mechanisms through the use of the zebrafish local search behavior. This is a behavior that zebrafish employ following the loss of environmental illumination where they …

Pygoscelis Penguins Prefer Different Oceanographic And Terrestrial Habitats During The Austral Summer, Katherine L. Gallagher, Rachel Herman, Katherine Walton, Michael S. Dinniman, Heather J. Lynch

OES Faculty Publications

Pygoscelis penguins interact with both terrestrial and marine environments, especially during the austral summer when they raise their chicks. Accessible ice-free ground spaces serve as locations for penguins to build colonies and successfully raise chicks while the surrounding marine environment serves as the foraging grounds for adult birds. Penguins must be able to navigate through the waters around their colonies to forage for Antarctic krill (Euphausia superba), their primary prey during the austral summer. Krill, whose distributions are driven partially by the surrounding physics and partially by their behaviors, must also be plentiful in the waters near the …

Investigating The Effectiveness Of Best Management Practices In Reducing Fecal Bacteria In Narrow River, Rhode Island, Katherine Thompson

Open Access Master's Theses

Fecal bacterial contamination shapes how communities manage and use estuarine waters, with consequences for ecosystem health and public access. In Rhode Island's Narrow River, elevated concentrations of fecal coliforms and enterococci have restricted shellfishing for decades despite ongoing management efforts. From 2004 to 2018, local organizations implemented Best Management Practices (BMPs) to address water quality challenges, yet their effectiveness remains incompletely understood. This study analyzes three decades of monitoring data using linear regression, generalized additive models, and Before After Control Impact methods to evaluate BMP effectiveness and identify key drivers of contamination. Linear regression revealed spatially variable trends, with bacterial …

Spatial Analysis Of American Chestnut (Castanea Dentata) Distribution And Ecology In Kentucky’S Federal Lands, Jacob Raymond Pease

Murray State Theses and Dissertations

Anthropogenic factors have been the cause of the decline of tree species across the globe. From unsustainable logging and development to disease and improper management, threats to forests have taken their toll. The American chestnut (Castanea dentata) was once an integral basal tree species in Appalachian forests, but chestnut blight drove the species to functional extinction by the mid-1900s. The recent creation of genetically modified chestnuts gives hope for future restoration of the species throughout its historical range. Despite blight resistance, effective restoration will require optimal site selection for finding and planting chestnuts, which will maximize limited resources. …

Impact Of Urban Development On Uv Exposure: A Clustering And Machine Learning Assessment, Taufik Roni Sahroni Mr., Verdi Yasin, Lulut Alfaris, Reza Ariefka, Ruben Cornelius Siagian, Mohammad Alfin Karim, Nana Rahdiana, Ade Suhara

Journal of Environmental Science and Sustainable Development

The relocation of Indonesia's capital city is anticipated to promote inclusive economic growth while embracing cultural diversity. However, this transition may affect ultraviolet (UV) radiation exposure patterns. The study investigated variations in UV exposure in the IKN region, focusing on urban development factors such as land use and population density that affect public health, sun protection, and skin cancer prevention. The research hypothesized that UV radiation is significantly correlated with these factors. UV Index data from 2010-2023, a hierarchical clustering method, identifies complex data patterns without determining the number of clusters. XGBoost, a machine learning model, was used for handling …

Identifying Fecal Contamination Sources In The Grand Bay National Estuarine Research Reserve, Amanda M. Free

Theses and Dissertations

The Grand Bay National Estuarine Research Reserve (GNDNERR) has a history of elevated fecal coliform counts. However, the source of the contamination is not well understood. According to past sanitary surveys, there has been a history of malfunctioning residential septic systems and inadequate wastewater treatment in the upper watershed. Feral hogs (Sus scrofa) and birds are also abundant in the estuary and could be potential contributors to elevated fecal coliform levels. To better understand the temporal and spatial variation of fecal coliforms in the GNDNERR and inform oyster reef management, eight sites within the GNDNERR watershed were sampled monthly for …

Occupancy Of Fish Species Of Greatest Conservation Need And Temporal Patterns Of Assemblage Occurrence In Sandhills Ecoregion, Nebraska Streams, Braxton M. Newkirk

School of Natural Resources: Dissertations, Theses, and Student Research

Fish species’ occurrence is influenced by environmental conditions across multiple spatial and temporal scales. Alteration to stream systems has the potential to affect occurrence patterns of fish species. Stream systems of the North American Great Plains face threats originating from climate change and anthropogenic activities resulting in negative implications for many fish species. The Sandhills Ecoregion, Nebraska is considered one of the largest intact grasslands in North America, and thus may experience fewer threats than surrounding areas. Stream systems of the Sandhills Ecoregion are home to 12 fish species of greatest conservation need (SGCN). Little context exists regarding the environmental …

Structure Modifications And Alternative Monitoring Designs Of Wildlife Road Mitigation Structures, Madison T. Nadler

Theses and Dissertations

Wildlife mitigation structures are designed to keep animals off roadways while providing them safe passage to the other side and not impeding traffic flow. Camera traps are commonly used to assess the success of these mitigation structures, but there are downfalls to both the methods and structures. Alternative mitigation structure designs are needed to better prevent wildlife from accessing roadways in areas where they should be deterred. Additionally, traditional camera trapping methods do not accurately capture the full wildlife communities that may be utilizing these structures and other survey methods are needed, specifically aimed at small mammals, amphibians, and reptiles. …

Mathematical And Statistical Methods To Harness Limited Data In Models For Ecological Space Use Under Global Change, Sarah C. Bogen

All Graduate Theses and Dissertations, Fall 2023 to Present

The dynamics of how plants and animals use space in their habitats has important implications for the fields of ecology and conservation. However, understanding and responding to these spatial and temporal dynamics is often limited by data availability, financial resources and biases. As average global temperatures increase, suitable habitats shift poleward and require local populations to move with suitable habitat, adapt to the changing environment, or risk extinction. Capacity to persist without movement may be estimated by considering changes to a combination of habitat characteristics. Capacity to track suitable habitat may be modeled through synthesizing information on species demographic mechanisms …

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

Human Impacts On Mammal Diversity From The Pleistocene To The Present, Carson P. Hedberg

Biology ETDs

Humans have fundamentally altered the planet’s biodiversity. It is critical to characterize these changes, but also to understand how they impact the structure and function of modern ecosystems. This dissertation investigates how anthropogenically mediated species losses and/or introductions influence ecological function and community structure in mammals across multiple temporal and spatial scales. We found that selective loss of large-bodied mammals over the Late Quaternary has led to severe losses in functional diversity in modern ecosystems, suggesting megafaunal mammals contribute distinct ecological functions. These changes to mammal diversity and distribution over millennia have altered both global patterns in functional diversity and …

No Change In Functional Ecology Or Body Size In Response To A Global Climate Event In The Late Maastrichtian Owl Creek Formation, William T. Rizza

Master's Theses

During the last 300 ka of the Maastrichtian, global temperatures increased and decreased by ~2℃, likely caused by a pulse of Deccan volcanism. The Owl Creek Type Section in Mississippi records some portion of the last 400 ka of the Late Maastrichtian. It is expected that marine invertebrates will demonstrate a taxonomic, ecological, or morphological response to rapid temperature change. I anticipate a decrease in taxonomic diversity and shell volume and an increased abundance of low activity-level species, similar to the ecological impacts observed in response to Large Igneous Province eruptions in the geologic record. Clumped isotope paleotemperature reconstruction recovers …

A Paradigm For Ecological Dynamics In Predator-Prey Systems: Applications To Climate Change, Grayson D. Adams, Aditi Ghosh Dr.

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.