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An Energy-Stable Mixed Cg-Dg Scheme For A Full Shliomis Phase Field Model Of Two-Phase Ferrofluid Flows, Mahdi Gharehbaygloo

Doctoral Dissertations

"Ferrofluids are magnetic nanoparticle suspensions whose motion couples surface tension, flow field, magnetostatics, and magnetization dynamics. This dissertation develops, analyzes, and validates an energy-stable finite element method for a two-phase ferrofluid model that couples the Cahn-Hilliard equations with the full Shliomis model of single-phase ferrofluids, retaining its damping torque term, magnetic torque term, and magnetic stress term.

The spatial discretization is a mixed continuous Galerkin (CG) and discontinuous Galerkin (DG) formulation. It uses continuous ��2 elements for the phase field, chemical potential, velocity, and magnetostatic potential, discontinuous ��2 elements for the magnetization, and discontinuous ��1 elements for the pressure. The …

Integrative Approaches And Data Analysis For Single-Cell Rna Sequencing Data, Teng Long

Computer Science and Engineering Dissertations

The rapid growth of single-cell RNA sequencing and transcriptomic datasets has created major computational challenges in causal discovery, representation learning, and biologically faithful data generation. To address these challenges, this dissertation presents three complementary deep learning frameworks for the analysis and modeling of transcriptomic data. Together, these methods form an integrative computational toolkit for understanding complex biological systems from high-dimensional and heterogeneous gene expression data.

First, this dissertation introduces DAG-VAERL, a causal discovery framework that integrates variational autoencoders, graph neural networks, reinforcement learning, and attention mechanisms to infer directed acyclic graphs for gene regulatory network analysis. DAG-VAERL improves causal structure …

Data-Driven Climate Damage Functions For Capital Formation: Estimating The Climate Penalty Using Maching Learning, Pramudya Wicaksono

All Graduate Theses, Dissertations, and Other Capstone Projects

Traditional integrated assessment models assume parametric climate damage functions that may miss nonlinearities, heterogeneity, and dynamic effects on investment. This thesis develops a data-driven climate damage function for capital formation by estimating the predictive relationship between climate conditions and future gross fixed capital formation (% GDP) across 125 countries over 1982–2019. We construct a panel dataset by combining daily ERA5 climate reanalysis data (accessed via the Copernicus Climate Data Store API and aggregated to yearly country-level variables including temperature anomalies, extreme heat days, frost days, precipitation, and solar radiation) with economic indicators from the World Bank World Development Indicators and …

Pull-Out Performance Of Multiple Glued-In Rods In Sustainable Inorganic-Bonded Bamboo Composite Under Perpendicular-To-Grain Loading, Jing Ru Yao, Shaohua Yu, Qingxia Yue, Hanshu Zhang, Ernian Zhao

Physics and Engineering Science

As a sustainable bio-based material derived from bamboo crops, inorganic-bonded bamboo composite (InorgBam) exhibits excellent environmental sustainability, fire resistance, and long-term durability. To enable its broader adoption in structural applications, robust and efficient connection methods are essential. Glued-in rod (GiR) connections, characterized by high strength, stiffness, and superior fire performance, are especially well-suited for modern engineered bamboo and timber connections. The pull-out behavior of multiple GiRs in InorgBam material under perpendicular-to-grain loading was experimentally investigated using double-, triple-, and quadruple-rod specimens. The influence of anchorage length and spacing on failure modes and load-carrying capacity was systematically analyzed. Results demonstrate that …

Ai-Powered Lawyering: Ai Reasoning Models, Retrieval Augmented Generation, And The Future Of Legal Practice, Daniel Schwarcz, Sam Manning, J. J. Prescott, Patrick Barry, David R. Cleveland, Beverly Rich

Articles

Generative AI is set to transform the legal profession, though its most promising uses and ultimate effects are still unclear. While AI models like GPT-4 improve efficiency, they can also “hallucinate” and may undermine legal judgment, particularly in complex tasks typically handled by skilled lawyers. This article examines two emerging AI innovations that may mitigate these concerns: Retrieval Augmented Generation (RAG), which grounds AI-powered analysis in legal sources, and AI reasoning models, which structure complex reasoning before generating output. We conduct the first randomized controlled trial assessing these technologies, assigning upper-level law students to complete legal tasks using a RAG-powered …

Predicting Next-Day Eur/Usd Direction Using News Sentiment And Technical Indicators With Finbert And Xgboost, Darshan Sanjaybhai Khunt

Selected Full-Text Master Theses 2021-

Forecasting exchange-rate movements is a challenging task because currency prices are influenced not only by macroeconomic and financial variables but also by market sentiment reflected in financial news. This thesis examines whether financial news headlines can be used to predict the next-day directional movement of the EUR/USD exchange rate by applying finance-specific natural language processing and machine learning techniques.

The study uses a dataset of approximately 466,000 finance-related English-language news headlines collected between 2021 and 2025, aligned with daily EUR/USD closing prices. After preprocessing and temporal alignment, the data are used to construct a binary classification task in which the …

Forecasting Precipitation In Cuba Using Graph Based Deep Learning, Taufiqul Islam

Earth & Environmental Sciences Theses

Daily precipitation forecasting remained a challenging problem in regions characterized by strong spatial heterogeneity, nonlinear atmospheric dynamics, and intermittent rainfall behavior. Cuba represented a particularly complex case due to the combined influence of tropical cyclones, easterly waves, mesoscale convective systems, and orographic effects, which produced highly variable rainfall patterns in both space and time. Conventional statistical and machine-learning models typically treated stations independently and therefore overlooked spatial dependencies that strongly influenced rainfall variability across the island.

This study developed a spatiotemporal deep-learning framework for daily precipitation forecasting across 40 spatial nodes in Cuba using data from 1979 to 2023. The …

Reliable And Label-Efficient Learning For Open-World Visual Perception And Robot Learning Under Uncertainty, Zongyao Lyu

Computer Science and Engineering Dissertations

Modern learning systems deployed in open-world environments must make reliable decisions despite predictive uncertainty, previously unseen classes, limited annotations, and distribution shifts. This dissertation develops methods for reliable and label-efficient learning in visual perception and robot control.

First, this work studies uncertainty in object detection by representing semantic and spatial predictions probabilistically. A deep-ensemble framework aggregates detections into class-probability distributions and probabilistic bounding boxes, while a subsequent extension combines deep ensembles with Monte Carlo dropout to further investigate predictive uncertainty. Second, this dissertation addresses open-set recognition, where classes absent during training may appear at inference time. An empirical study shows …

Foreword, Pedagogical Innovations In Computer Science Education, Helen Crompton

STEMPS Faculty Publications

[Introduction] Computer science education sits at a defining moment. Across schools and universities worldwide, computing is no longer a niche discipline reserved for a select few. It is a foundational literacy that shapes how learners understand the world, participate in society, and imagine their futures. At the same time, the rapid pace of technological change, particularly in artificial intelligence, data systems, and intelligent tools, has placed unprecedented pressure on educators to rethink not only what we teach, but why and how we teach it. This book arrives precisely when such reflection is most needed.

An Llm-Driven System For Doctor-Patient Simulation, Akilan Amithasagaran

Computer Science Theses

Effective physician-patient communication is fundamental to clinical competence, yet traditional simulation-based training methods using standardized patients and high-fidelity manikins are costly, resource-intensive, and difficult to scale. This dissertation presents CLiVR (Conversational Learning system in Virtual Reality), an LLM-driven system that integrates large language models and 3D avatars to simulate doctor-patient interactions for medical communication training.

CLiVR addresses three key limitations in existing virtual reality medical training platforms. First, the system operates on standalone Meta Quest 3 hardware with realistic 3D patient avatars featuring synchronized lip movements and speech-based interaction. Second, CLiVR grounds LLM responses using a curated syndrome-symptom database, constraining …

Bail Reform, Large Language Model Risk And Reasoning, William Wyatt

CGU Theses & Dissertations

This dissertation contains three studies. Each asks how rules or language change the choices people and machines make when outcomes are uncertain. The first study, written with Kiran John, evaluates California’s 2020 cashless bail reform. We use propensity score matching on arrestee records from the windows before and after implementation, and we test whether the shift away from cash bail produced any effect on subsequent offending. It did not. Matched comparisons yield small, statistically insignificant differences across every window we examined. That null result cuts against both sides of the public argument. The reform did not drive a spike in …

An Ensemble Classifier For Ordinal Outcomes In High-Dimensional Genomics Data, Heranga K. Rathnasekara, Sinjini Sikdar

Mathematics & Statistics Faculty Publications

Analysis of genomics data for predicting disease outcomes is a fast-growing field in medical research. There often exist categorical, specifically, ordinal outcomes that need to be predicted based on genomic profiles. This has led to recent development of some high-dimensional ordinal classification methods that can address the large dimensionality of the genomic covariate set. These high-dimensional ordinal models tend to vary widely in their performance depending on the data they are applied to and the evaluation criteria used. In this article, we outline an ensemble ordinal classifier that integrates different ordinal modeling approaches through bootstrap-based model evaluation, multi-metric performance assessment, …

Three Decades Of Classifying Threatened Species: Lessons Learned From And About The Iucn Red List Criteria For Quantifying Extinction Risk, H. Resit Akçakaya, E. J. Milner-Gulland, Mike Hoffmann, Helen M. Regan, Ilona Naujokaitis-Lewis, Andre E. Punt, Kevin J. Gaston, David A. Keith, Stuart H. M. Butchart, Simon N. Stuart, Nigel J. Collar, Moreno Di Marco, Monika Bohm, Alex J. Berryman, David P. Mallon, Axel Hochkirch, Nicholas K. Dulvy, Malin Rivers, Thomas M. Brooks, James R. S. Westrip, Jonathan Paul Rodriguez, Craig Hilton-Taylor, Janet Scott, Simon Tarr, Sophie H. Ledger, Christi Linardich

Biological Sciences Faculty Publications

The IUCN Red List of Threatened Species, the most widely used global system for assessing species' extinction risk, has become a foundational source of information for conservation management, policy and research. Since the adoption of quantitative extinction risk criteria more than three decades ago, the Red List has expanded substantially in scope and influence, informing decisions ranging from species conservation and protected area designation to international agreements, corporate risk assessments and global biodiversity indicators. Given its central role, maintaining scientific rigour, transparency and trust in the Red List system is essential. Feedback from users, emerging from evolving applications and scientific …

Characterization Of Phytoplankton-Excreted Metabolites Mediating Carbon Flux Through The Surface Ocean, Yuting Zhu, Hanna S. Anderson, Eli Salcedo, Samuel E. Miller, Krista Longnecker, Melissa C. Kido Soule, Sheean T. Haley, Gretchen J. Swarr, Rogier Braakman, Sonya T. Dyhrman, Elizabeth B. Kujawinski

Chemistry & Biochemistry Faculty Publications

The marine labile dissolved organic carbon (DOC) pool is a dynamic reservoir of thousands of molecules that cycles approximately one-quarter of Earth’s primary production within days to weeks. After excretion by phytoplankton and other microbes, metabolites are rapidly consumed, resulting in low standing concentrations (picomolar to low nanomolar). Despite the decades-long search for labile DOC sources and molecular identities, marine phytoplankton exometabolomes are not well characterized, largely due to difficulties in measuring small polar molecules in saline water. Here, we profiled the exometabolomes of six axenic phytoplankton species representing key functional groups including a diatom (Thalassiosira pseudonana CCMP1335), a …

Nonpyrogenic "Black" Nitrogen Likely Plays A Major Yet Underrecognized Role In The Global Nitrogen Cycle, João Vitor Dos Santos, Aleksandar I. Goranov, Kyle M. Lambert, Theodoro Da Rosa Salles, Susan J. Carter, Ann Pearson, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

Condensed aromatic nitrogen (ConAN) is commonly found in soil and aquatic environments. ConAN is broadly viewed by the biogeochemistry community as a combustion-derived product leading to its frequent designation as pyrogenic “black” nitrogen. Here, we provide evidence that ConAN can also form through nonpyrogenic pathways. In an experiment simulating biomass oxidation, pine wood boards assembled with iron nails were exposed to 12 years of natural environmental conditions. Nitrogen concentrations increased from 0.2 to 1.2 wt % with increasing proximity to the nail. Ultrahigh resolution mass spectrometry showed enrichment of nitrogen-containing compounds within the lignin and condensed aromatic domains. X-ray spectroscopic …

Multidentate Surfactant-Dependent Synthesis Of Giant Iridium Superstructures, Ramjee Balasubramanian, Maeren E. Hill

Chemistry & Biochemistry Faculty Publications

Giant superstructures of iridium, comprised of smaller spherical and slightly larger anisotropic nanoparticles, were synthesized by reducing iridium chloride in the presence of resorcinarene, a class of tetrameric macrocyclic polyphenols, with sodium borohydride in ethanol in 30 min under mild conditions. These superstructures were characterized by a range of techniques including TEM, HRTEM, EDS and other spectroscopic methods. The impact of the macrocyclic surfactant, its features and reaction conditions in dictating the formation of giant iridium superstructures was evaluated. The packing density of nanoparticles in these giant iridium superstructures could be altered qualitatively by varying the duration of the reaction, …

References, Appendices & All Parts Merged, Konstantin Likharev

Essential Graduate Physics

Includes: Appendix MA: Selected Mathematical Formulas; Appendix UCA: Selected Physical Units and Constants; References; EGP merged file (all parts, appendices, and references)

Pressure Field Estimation From 2d-Piv Measurements: A Case Study Of Fish Suction-Feeding, Jensine C. Coggin, Duvall Dickerson-Evans, Erin E. Hackett, Roi Gurka

Marine Science

Particle image velocimetry (PIV) flow measurements are common practice in laboratory settings in a wide variety of fields involving fluid dynamics, including biology, physics, engineering, and medicine. Dynamic fluid pressure is a notoriously difficult property to measure non-intrusively, yet its variation is a driving flow force and critical to model correctly. Techniques have been developed to estimate the pressure from velocity and velocity gradient measurements. Here, we highlight a novel application of boundary conditions when applying such pressure estimation techniques based on two-dimensional PIV data; the novel method is especially relevant to problems with complex boundary conditions. As such, it …

Gone But Not Forgotten: Collaborative Telemetry Network Provides Insight Into Out-Of-System Movements Of Common Snook, Victoria S. Goldner, Mack White, Cody W. Eggenberger, Alia A. Jones, Cameron C. Atkinson, Jonathan R. Rodemann, W. Ryan James, Jordan A. Massie, Andrea M. Kroetz, Patrick M. O’Donnell, Ross E. Boucek, Rolando O. Santos, Jennifer S. Rehage

Marine Science

Objective The objective of this study was to examine the movements of Common Snook Centropomus undecimalis, a tropical euryhaline species, out of the Shark River, Everglades National Park, Florida, USA, and gain a better understanding of their long-distance regional movements. Methods This study used 7 years (2017–2023) of acoustic telemetry data from the Shark River Florida Coastal Everglades Array and from five other collaborative telemetry arrays in southwestern Florida to assess out-of-system movements for 119 Common Snook. Generalized linear models were used to assess the relationships between out-of-system movements and biological and environmental variables. Results Most Common Snook departures took …

Do Developers Read Type Information? An Eye-Tracking Study On Typescript, Samuel W. Flint, Robert Dyer, Bonita Sharif

Research & Publications

Statically-annotated types have been shown to aid developers in a number of programming tasks, and this benefit holds true even when static type checking is not used. It is hypothesized that this is because developers use type annotations as in-code documentation. In this study, we aim to provide evidence that developers use type annotations as in-code documentation. Understanding this hypothesized use will help to understand how, and in what contexts, developers use type information; additionally, it may help to design better development tools and inform educational decisions. To provide this evidence, we conduct an eye tracking study with 26 undergraduate …

Exploratory Investigation Of Greenhouse Gas Emissions In A Natural And Restored Salt Marsh, Sophia Motta

Open Access Master's Theses

Coastal wetlands are typically considered greenhouse sinks, specifically playing an important role in the global carbon cycle (Chmura et al., 2003), but new studies have pointed to anthropogenic interference leading to the understanding that altered tidal salt marshes may also be producers of methane to the atmosphere, contributing to the greenhouse effect. Hydrologic alteration including due to sea level rise (SLR), peat subsidence, impounded water, and decreased accretion rate disruption can have negative effects on marsh biochemistry leading to potential changes in electron acceptor availability, redox gradient shifts, and microbial community structure within the environment. This research is intended to …

A Specification-Driven Framework For Self-Supervised Learning In Specialized Vision Domains, Mahmut S. Gokmen

Theses and Dissertations--Computer Science

Self-supervised learning (SSL) has emerged as a principled approach to visual representation learning that derives supervisory signal directly from unlabeled data, enabling foundation models to be trained at scale without manual annotation. Deployments in medical imaging and biometric recognition have demonstrated the potential of this paradigm, yet the assumptions that make SSL effective on natural image benchmarks fail systematically in specialized domains. Generic SSL pipelines encode a tacit assumption that the most informative correspondence is spatial proximity within a single acquisition. In specialized domains this assumption breaks at the level of the data-generating process: the signal that carries domain-specific information …

Inverse Problems For The Radiative Transport Equation In Local And Non-Convex Geometries, Faith E. Hensley

Theses and Dissertations--Mathematics

Inverse problems for the radiative transport equation (RTE) arise in a wide range of imaging applications, including optical tomography and problems motivated by non-line-of-sight imaging. Classical reconstruction methods rely heavily on ballistic, or unscattered, photons and typically require full boundary access, leading to severe instability and limited applicability in geometrically constrained settings. This dissertation investigates inverse radiative transport problems with restricted boundary data and develops reconstruction techniques based on scattered photons. The central focus of this work is the analysis and isolation of the single-collision term in the collision expansion of solutions to the RTE. By exploiting its distinct analytical …

Local Energy Decay For Non-Stationary Damped Wave Operators, Nicholas Dj Arsenault

Theses and Dissertations--Mathematics

This work establishes integrated local energy decay (ILED) estimates for the damped wave equation on certain non-stationary spacetimes. The main technical result is a high frequency estimate that holds in great generality, provided that null geodesics trapped in a compact region are sufficiently damped. This is combined with low- and medium-frequency estimates to establish full local energy decay. We conclude by providing a counterexample where the damping assumption fails and local energy decay does not hold.

Volatility Modeling With An Application To Risk Parity Portfolios, Kenneth Hou

CMC Senior Theses

This thesis studies volatility modeling in the context of risk parity portfolio construction. I compare three risk parity portfolios that differ only in their underlying volatility model: a historical covariance baseline, a Bayesian stochastic volatility model, and a GRU–GARCH hybrid neural network. Using daily returns on Kenneth French’s five industry portfolios from January 2016 through December 2025, I construct monthly rebalanced portfolios under each model, with the SV and GRU forecasts embedded in hybrid covariance matrices that combine forecasted volatilities with rolling historical correlations. The results document a divergence between forecast accuracy and portfolio performance: the SV model is the …

Rank Rebalancing In Commodity And Foreign Exchange Markets, Prateek D. Vyas

CMC Senior Theses

This thesis empirically tests the rank-rebalancing mechanism of Stochastic Portfolio Theory (SPT) across commodity futures, foreign exchange futures, and equity ETFs. The Reverse Price-Weighted strategy (RPW) assigns, to each asset, the market weight of the asset at the opposite price rank, and generates an annualized excess return of 2.90% over the price-weighted (MKT) commodity benchmark, during the period of November 1977 to October 2025 (HAC t = 2.058, p = 0.040). The differential Sharpe ratio (dSharpe) of 0.245 is confirmed by a stationary block bootstrap, with a 𝑝-value of 0.015, and factor regressions controlling for carry, momentum, and value yield …

Microbial Community Structure In Global Soils, Matthew Jabro

CMC Senior Theses

Soil harbors the most diverse microbial communities on Earth, yet whether predictable community types exist across biomes and whether taxonomic composition encodes habitat of origin remain open questions at global scale. This thesis addresses both questions by applying unsupervised clustering and supervised classification to transformed 16S ribosomal RNA (rRNA) amplicon profiles from two independent datasets: the global topsoil survey of Bahram et al. (193 samples) and the Earth Microbiome Project (EMP) soil subset of Thompson et al. (2,209 samples). Application of a sample clustering method based on a mixture of Gaussian Graphical Models (MixGGM) identified 19 clusters in the topsoil …

Analysis Of Δ¹¹B As A Seawater Ph Proxy: Comparing Ocean Circulation Inverse Model Output With Marine Calcifier Geochemistry, Jesse I. Dong

CMC Senior Theses

Increasing anthropogenic carbon flux into the oceans decreases seawater pH, alters dissolved inorganic carbon speciation, and reduces biogenic calcification. The marine calcifiers— specifically corals and coralline algae—incorporate elements from surrounding seawater into their carbonate structures, which preserve past records of ocean carbon chemistry. In particular, boron in biogenic carbonate is a potentially valuable proxy for historical ocean pH across human timescales. Within seawater, boron primarily exists as boric acid B(OH)3 and borate ions B(OH)4 - , where higher pH favors the formation of borate ions. Borate ions preferentially incorporate the heavier ¹¹B isotope over 10B. On the other hand, if …

Machine Learning For Predicting Prosthetic Limb Movements, Jessica Alexandra Cegarra Arraiz

Theses and Dissertations

This thesis develops and evaluates a deep learning-based prediction model capable of identifying intended limb movement from surfaced electromyography (sEMG) signals using sequence learning techniques. sEMG signals change over time due to multiple factors such as muscle fatigue or user variability. Traditional prosthetics control methods rely on static feature extraction, ignoring how signals change over time, thereby limiting their ability to capture the temporal changes of muscle activity. As a result, these approaches often lead to poor accuracy, robustness, and generalization. Limited experimental validation has been conducted on sequence-based machine learning approaches using temporal sEMG data from publicly available datasets …

Evaluating Hybrid Quantum-Classical Models For Image Classification In The Nisq Era, Utku Binkanat

Theses and Dissertations

This thesis presents a systematic empirical evaluation of quantum machine learning performance under noisy intermediate-scale quantum (NISQ) era constraints. Through 670 controlled experiments, it evaluated quantum kernel support vector machines and variational quantum classifiers against classical baselines on MNIST binary and multiclass classification tasks with systematic variation of problem difficulty, feature dimensionality (4, 8 qubits), and training set size (n ∈{100, 250, 400, 500, 2000, 4000}). Statistical rigor was ensured through five random seeds per condition and comprehensive significance testing. During the testing with binary datasets, classical methods (SVM, logistic regression, k-NN, neural networks) achieved 85.9% to 99.6% accuracy with …