Digital Commons Network^™

Analyzing The Evolution Of Science: Topological Cycles And Community Detection In Knowledge Networks, Frances C. Mcconnell

Mathematics, Statistics, and Computer Science Honors Projects

How scientific knowledge grows and organizes itself is a central question in the study of science. This thesis uses tools from topology and network science to detect and characterize knowledge gaps—places in a field’s literature where related concepts do not co-occur. We develop a metric to quantify the degree of interdisciplinarity of each gap, using the community structure of the underlying network as a proxy for subfields. Across a wide range of fields, gaps reliably span multiple subfields and evolve in recognizable temporal patterns, highlighting new insights into how scientific fields are structured and their stage of development.

Clear-Air Turbulence Climatology And Trends, Liam Rodgers, Mark Sinclair

Publications

Clear‑air turbulence (CAT) is a major aviation hazard that occurs near airline cruising altitudes in both cloud and cloud‑free environments. Its lack of a distinct visual signature makes detection and avoidance difficult. CAT is associated with wind shear near jet streams, gravity waves, and Kelvin–Helmholtz instability and may be further enhanced by climate change. This study examines the climatology, spatial distribution, seasonal variability, and trends of CAT over the contiguous United States.

Pilot Reports (PIREPs) from 2001–2025 between 100 and 400 hPa are analyzed alongside jet stream, shear, and stability diagnostics derived from NCEP–NCAR Reanalysis data. Proxies such as inverse …

Processing Conditions In Narrative Interpretation: A Structural Account Of Cf/Ef Divergence In "The Clerk's Tale”, Griselda Poe

Publications and Research

This paper applies the framework established in Paper 19, "Cognition Is Not Content: A Structural Account of Processing Conditions," to re-describe Chaucer's "The Clerk's Tale" from The Canterbury Tales.

The same narrative produces two incompatible interpretations: a record of domestic violence, and a story of genuine love. This divergence does not arise from differences in ethical judgment or emotional response. It arises from structural differences in the conditions under which information is reconstructed.

This paper does three things. First, it analyzes the characters Walter and Griselda in terms of CF (Core-foregrounded) and EF (Modulation-foregrounded) processing conditions. Second, it describes …

Cyanine Dyes As Next-Generation Fluorophores: Applications In Cell Sorting And Fingerprinting Technologies, Super-Multiplexed Spectroscopy, Biomedical Imaging, And Beyond, Lucas Allen Davis

Undergraduate Honors Thesis Collection

As biochemical, pharmaceutical, and medical sciences advance, the demand for technologies capable of probing multiple cellular targets simultaneously continues to increase. Super-multiplexed spectroscopic techniques offer a pathway toward comprehensive cellular fingerprinting by overcoming the spectral limitations of conventional fluorescence labeling. By circumventing the traditional “color barrier,” cyanine-based Raman tags enable the simultaneous discrimination of numerous cellular morphologies, allowing spectroscopy and imaging to be integrated for high-dimensional cellular analysis. Technologies developed in Goda Lab—including high-throughput flow cytometry, virtual freezing fluorescence imaging (VIFFI), Fourier-transform coherent anti-Stokes Raman spectroscopy (FT-CARS), and MERdot nanoparticles—address longstanding trade-offs between throughput, resolution, sensitivity, and multiplexing capacity. Central …

Bottles, Butterflies, And Biomass: Recycled Glass Sand, Microbial Additions, And Herbivory Effects On Milkweed Growth, Kealey Skinner

Honors Theses

Plant-soil-microbe interactions are integral components of ecological networks and drive ecosystem function from the bottom-up. Whereas herbivores regulate ecosystem function from the top-down, having opposing and potentially complementary effects on ecosystem function. My thesis sought to understand how below-ground microbial communities contribute to herbivore preference and plant biomass across varied soil substrates. My thesis asked: how do substrate and soil microbial communities influence herbivore preference and plant biomass accumulation on swamp milkweed (Asclepias incarnata)? To address this question, seedlings of A. incarnata were sown in 2.5 cm wide × 10 cm deep pots filled with either natural beach sand or …

Perseus Interim Evaluation Report, Data Innovation Project, University Of Southern Maine

Publications

The Data Innovation Project (DIP) from the University of Southern Maine’s Catherine Cutler Institute serves as the external evaluator for the USDA NIFA SAS-funded Promoting Economic Resilience and Sustainability of the Eastern U.S. Forests (PERSEUS) project. This project is a joint effort between Purdue University, the University of Georgia, and the University of Maine. The DIP supports the project in assessing its progress, implementation, and emerging impacts through data collection from project participants and systematic document review (i.e. annual USDA reports, personnel lists, and meeting notes). This includes synthesizing quantitative and qualitative data and incorporating these metrics into independent evaluation …

Taking A Deeper Look: Attributing Tonal Values Of Photolumens To Their Emulsions Using Scanning Electron Microscopy, Anna M. Moore

All Theses

This thesis examines whether tonal variation in photolumens made with historic silver gelatin photographic papers can be linked to differences in elemental composition. Photolumens are cameraless photographic images created by placing objects directly on light-sensitive paper and exposing them to ultraviolet light. Because expired and historic darkroom papers often produce unpredictable colors and tones, this study asks whether visually defined tonal groups also show measurable chemical differences.

Twenty historic paper samples were exposed, documented, and sorted into five tonal groups based on visible image characteristics. Each sample was then analyzed using scanning electron microscopy with energy dispersive X-ray spectroscopy (SEM-EDS) …

Enhancing Food Security In Stann Creek. Belize Using Meat Rabbits, Lindsey Garretson

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

In recent years, food insecurity and the prevalence of hunger have rapidly grown throughout the world, but especially within Latin America and the Caribbean. Along with growing rates of food insecurity and hunger there are increases in medical conditions including negative impacts the functioning of every major organ system, increased rates of mental illness, both overweight and underweight children, wasting in both children and adults, and anemia. Availability and access to healthy, nutritional food options can help lower the risk of these conditions. With these considerations, the goal of this project was to create an all-encompassing manual and construction guide …

Func: Reducing The Impact Of Android Framework Evolution On Malware Detection, Hailong Yu, Tiantian Wang, Lwin Khin Shar, Hanmeng Li, David Lo

Research Collection School Of Computing and Information Systems

Android malware detection approaches commonly use APIs and permissions as features for classifying malware. However, since the release of the first Android operating system in 2008, the Android framework has undergone numerous version updates. The evolution of the Android framework over time has led to changes in APIs and permissions, including deprecations and replacements. These changes can result in inaccurate characterization of Android malware, thereby affecting performance of malware detectors. There is a lack of methods to mitigate the impact of Android framework evolution on malware detection. To fill this gap, we conduct a systematic study of the impact of …

Beyond The Interface: Human Perceptions Of Generative-Ai Chatbots As Conversational Partners, Browning W.E. Blair

All Theses

Generative AI (gen-AI) chatbots are becoming embedded in everyday communicative life, yet it remains unclear whether users perceive these systems as socially reciprocative conversational partners. Therefore, this study examines how young adults understand and interact with gen-AI chatbots, focusing on perceptions of conversational partnership, anthropomorphism, politeness, discomfort, and technical understanding. Guided by the CASA framework, Media Equation Theory, and the uncanny valley hypothesis, this study employed four semi-structured, online focus groups with 15 undergraduate students and recent college graduates in the United States. Findings indicate that participants did not broadly perceive gen-AI chatbots as conversational partners in the interpersonal sense. …

Design And Verification Of The Multi-Slit Solar Explorer Camera Field Programmable Gate Arrays, Jordan M. Johnson

All Graduate Reports and Creative Projects, Fall 2023 to Present

The Multi-Slit Solar Explorer, or MUSE, is a NASA mission that will take images of the Sun to study solar flares and the solar corona. The mission will provide insight into the mechanisms behind space weather. The mission consists of two cameras: the Spectrograph (SG), and the Context Imager (CI). The Utah State University Space Dynamics Laboratory is providing both cameras for the mission.

This report describes a part of the design and verification process for a central component on these cameras known as the Field Programmable Gate Arrays (FPGAs). These FPGAs are programmed to acquire, handle, and send images …

Privacy Protection In Machine Learning: Methods For Structured And Unstructured Data, Karuna Bhaila

Graduate Theses and Dissertations

As machine learning models become increasingly integrated into data-driven decision-making, the protection of sensitive information throughout the model lifecycle is a paramount concern. As these models process and memorize sensitive, proprietary, or personal data, they risk leaking information through their outputs or internal states, especially in domains such as healthcare and finance. The protection of data in machine learning has thus been a crucial field of study. Within this paradigm, researchers have studied theoretical and application-oriented mechanisms for realizing privacy protections for various data formats. Nonetheless, privacy in machine learning still has many open problems, especially with the emergence of …

Deciphering Chemomechanical Couplings In Proteins Using Molecular Dynamics And Enhanced Sampling Techniques, Matthew Brownd

Graduate Theses and Dissertations

Proteins function through a complex interplay between chemical interactions and mechanical motions across multiple spatial and temporal scales. Understanding how ligand binding, conformational dynamics, and structural flexibility collectively regulate protein function remains one of the central challenges in molecular biophysics. This dissertation presents a computational investigation into chemomechanical coupling in three distinct classes of biomolecular systems using all-atom molecular dynamics (MD) simulations and enhanced sampling methods, with particular emphasis on free-energy calculations and long-timescale conformational analysis. The first part of this work focuses on ligand binding in hyperpolarization-activated cyclic nucleotide-gated (HCN) channels, which regulate rhythmic electrical activity in the heart …

Developmental Mathematics As A Potential Barrier To Degree Completion In Community Colleges, Cynthia Bernice Fletcher

Graduate Theses and Dissertations

Developmental mathematics is often seen as a barrier to student progression in community colleges, especially for students pursuing Associate of Science degrees requiring math coursework. This quantitative, ex post facto, non-experimental study examined how developmental mathematics factors predicted Associate of Science degree completion at a two-year community college in the West South-Central United States. Specifically, it assessed how academic performance in developmental mathematics, placement method, math pathway, and number of developmental math courses related to Associate of Science degree completion, as well as differences across student subgroups. Archival institutional data were used for first-time-in-college students across four cohorts: 2018, 2019, …

Structural Relaxation In Glass-Forming Liquids At Extreme Pressure: Photon-Correlation Spectroscopy And Constrained Thermodynamic Surface Modeling, Kevin Wayne Lyon

Graduate Theses and Dissertations

Structural relaxation in glass-forming liquids is strongly dependent on both temperature and pressure, yet direct measurement of structural α-relaxation under multi-gigapascal compression has remained experimentally challenging. This work extends depolarized photon correlation spectroscopy (DPCS) to pressures approaching 5 GPa in a diamond anvil cell, representing the highest-pressure implementation of this technique and enabling direct measurement of the structural α-relaxation in a pure liquid at extreme compression. This capability provides access to dynamical regimes previously unexplored by photon correlation spectroscopy and establishes a platform for probing glassy dynamics at high pressure. To describe these measurements, a constrained relaxation-time surface framework is …

Solid Embedded Telemetry, Pranav Balasubramanian Natarajan

Graduate Theses and Dissertations

This thesis explores the integration of the Solid decentralized data framework within embedded and legacy energy control systems to enable secure, access-controlled, and interoperable data exchange. Two implementations were developed to evaluate Solid’s practical applicability: an ESP32 client implementing Solid-OIDC authentication and telemetry publication to a Solid Pod, and a Modbus-to-Solid bridge translating Modbus RTU communications into RDF-based data for bidirectional control. Experimental evaluation highlighted the effects of task scheduling and blocking operations on the ESP32, and polling-based communication latency within the Modbus bridge. These findings reveal the architectural and computational trade-offs involved in extending Solid to constrained or protocol-bound …

Effects Of Wetting And Drying On Nutrient Mobilization In Aquatic Systems, Karessa Grace De La Paz

Graduate Theses and Dissertations

Wetting and drying cycles are a fundamental, but underexplored, control on nutrient mobilization and transport in aquatic ecosystems. Such intermittency impacts approximately 60% of the world's streams and rivers, and the extent is expected to increase with future climate change. Additionally, aging reservoir infrastructure is driving restoration efforts, like large-scale drawdowns, that can expose benthic sediments to extended dry periods before refilling. Despite the prevalence of wet-dry cycles, how they influence nutrient transport and mobilization across different aquatic ecosystems remains poorly understood. To address this gap, this thesis presents two complementary studies exploring nutrient dynamics in Arkansas aquatic ecosystems that …

Geospatial Science And The Changing Environment: Applied Methods For Sustainable Agriculture And Landscape Management, Harrison Wakefield Smith

Graduate Theses and Dissertations

Rapid environmental change is disrupting agricultural productivity, ecological function, and the long-term resilience of managed landscapes. At the same time, the rapid growth of geospatial data science has improved our understanding of environmental change and increasingly is being used to improve sustainability in agricultural and environmental management. However, critical gaps remain that limit the applicability of data-driven insights in landscape management. This dissertation investigates the potential of geospatial analytics for sustainable agriculture and landscape management, with a focus on applied methods that operate across spatial and temporal scales. Using field, landscape, regional, and national datasets, it explores the capabilities and …

2026 Workshop On Bridging The Gaps: Tackling Microplastics And Nanoplastics Challenges In Coastal Ecosystems, Shenghua Wu, Kaushik Venkiteshwaran, Melike Dizbay-Onat, Alexandra Stenson, Jinhui Wang, Tina Miller-Way, Ebenezer Nyadjro, Bhuvnesh Bharti, John Weinstein, Yi Bao, Shihui Shen, Valerie Longa, Shenghua Zha, John Cleary, Marty Lind

Workshops

This report presents the findings from the 2026 Workshop on Tackling Microplastics and Nanoplastics (MNPs) in Coastal Ecosystems, which took place in Mobile, Alabama. More than 140 experts from universities, government, industry, and community organizations gathered to address the increasing issue of MNPs in coastal regions.

Barriers To Climate Change And Sustainability Action: Nursing Education And Practice, Dawn Marie Smith

Dissertations

Climate change is one of the most pressing public health emergencies of our time and nurses can have a great impact in their current practice and in the education of future nurses (The Alliance of Nurses for Healthy Environments, n.d.; American Nurses Association, 2023; Health Care without Harm, 2025). Deaths due to rising temperatures, vector-borne illness, and food insecurity related to drought and extreme weather are on the rise (WHO, 2024). It has been estimated that globally over 250,000 additional deaths will be attributed to climate related effects between 2030 and 2050 (Watts et al., 2020; WHO, 2023).

A primary …

Uncertainty In Neural Networks: An Interval Approach, Yahriel Isaac Guel

Open Access Theses & Dissertations

Neural networks produce predictions but not reliable measures of how much to trust them. A clinician handed an output such as "97% chance malignant" has no way to tell whether that 97% reflects the model's actual reliability on inputs like this one, or whether the same number would have appeared on an image the model has no business classifying. The standard approaches to uncertainty quantification - Bayesian neural networks, deep ensembles, and Monte Carlo dropout - are useful. However, sometimes the uncertainty we need to handle only comes as lower and upper bounds. This raises a natural question: what if …

Active And Passive Seismic Studies Across Glacial And Geothermal Environments, Lucia Fernanda Gonzalez

Open Access Theses & Dissertations

The collection of passive and active-source seismic data remains central to the detailed investigation and understanding of complex Earth processes across diverse and often inaccessible environments. Of equal importance is the selection of methodologies that must be tailored to the geological setting and dataset resolution to accurately depict the subsurface. In this dissertation, we apply a range of classic and/or "newly" developed algorithms, unique to each chapter, on seismic datasets from distinct glaciological and geothermal settings to evaluate their performance and enhance subsurface interpretation. In Chapter 1, we analyze active-source seismic data from Lemon Creek Glacier in Juneau, Alaska, using …

Mississippi Early Childhood Math Resource Guide: Supporting Mathematical Development From Birth Through Age Eight, Melissa Luckett, Systems Change Lab, Mississippi State University, Social Science Research Center, Mississippi State University

Books

The Mississippi Early Childhood Math Resource Guide is a comprehensive, research-informed digital publication designed to support the development of foundational mathematical skills in children from birth through age eight. Developed by the Systems Change Lab at Mississippi State University's Social Science Research Center, the guide translates evidence-based early mathematics concepts into practical, accessible strategies for educators, families, and caregivers. 

Organized by developmental stages, the guide integrates learning domains, age-appropriate math skills, and everyday instructional practices to promote the use of "math talk" and embedded learning opportunities across settings. It incorporates activities, instructional strategies, and resources aligned to support both formal …

Teaching Machines To Deter: Exploring Strategic Deterrence In Ai Models, Will Taylor

Theses/Capstones/Creative Projects

This capstone project investigates whether deterrence can emerge as a meaningful strategy within a zero-sum stochastic game using multi-agent reinforcement learning (MARL). After outlining core concepts in game theory and deterrence, the study models a simplified deterrence environment in which two minimax-Q agents repeatedly interact under uncertainty and adversarial incentives. The agents learn from rewards shaped by escalation costs, unilateral vulnerability, and the stabilizing benefits of restraint. Results show that both agents consistently converge toward a conservative, status-quo strategy, overwhelmingly selecting the Maintain action while avoiding both escalation and restraint in most scenarios. This behavior reflects the risk-averse logic of …

The Environment, Health, And Vector Nexus: Evaluating The Spatiotemporal Variability And Societal Impact Of Ticks In Arkansas, Dalton Williams

Graduate Theses and Dissertations

Tick-borne diseases (TBDs) are a surging public health and veterinary concern in the United States. In states like Arkansas, climate change and shifting land use have recalibrated the ecological niches of vector species. This research utilizes species distribution and ecological niche modeling to assess the spatiotemporal suitability of ixodid tick habitats, specifically where environmental and socioeconomic factors intersect. By integrating spatial science with public health frameworks, this study identifies priority intervention areas in underserved rural regions where healthcare resources are often constrained. This study provides a comprehensive methodological framework, leveraging remote sensing datasets and historic disease data to delineate exposure …

Improving Online Political Discussion With Automated Bot Intervention, Bethanie E. Hackett

Departmental Honors & Graduate Capstone Projects

The quality of political discussions occurring on online platforms or social media sites has been deemed quite poor. To address this issue, I investigated whether a Large Language Model (LLM) can be used to promote civil and productive political discussions by identifying and responding to unproductive dialogue. I fine-tuned an existing LLM to detect elements of problematic dialogue, namely misinformation, misrepresentation of sources, logical fallacies, bias, and toxic language, and then respond in a corrective yet non-confrontational manner. The resulting model is referred to as FroBot and was evaluated through an experiment in which a human participant was placed in …

Post-Quantum Cryptography Encryption Implementation For Messaging App, Callum S. Ward

Theses/Capstones/Creative Projects

This paper and complementary capstone project aim to explore the state of post-quantum cryptography today by defining the algorithms with which quantum computers can decipher modern asymmetric cryptographic algorithms in exponentially accelerated time, exploring national standards body NIST’s recommendations to circumvent these weaknesses with post-quantum solutions, and implementing recommended algorithms in my group’s project for the UNO Computer Science Capstone course, LockTalk. After having decided on ML-KEM for quantum-resistant asymmetric key transfer and AES-256 for symmetric message encryption and decryption, I was able to cryptographically encode messages to obscure their plaintext values from communication interceptions without any discernible increase in …

Blockchain Message Integrity For Messaging App: Python-Based Implementation Of Blockchain-Backed Verification And Tamper Detection, Brendan J. Farrell

Theses/Capstones/Creative Projects

With the rapid development and use of digital communication, the need for maintaining the integrity and authenticity of transmitted information becomes more pressing than ever.  However, existing methods of data exchange have several flaws and drawbacks such as reliance on centralized networks which are subject to manipulation, modifications, and potential failures.  Thus, the current project offers an innovative approach to improving the integrity and detection capabilities of messages in real-time communication platforms using the power of blockchain technology.  The proposed solution uses the inherent features of blockchain-based systems to ensure secure and safe message transmission.

Message Malware: File Vulnerability Scanning In Messaging Apps, Miah Mason

Theses/Capstones/Creative Projects

As messaging platforms become primary communication hubs within highly secure environments, they introduce significant vulnerabilities regarding file sharing with potential malicious content. This research, an honors extension of the Northrop Grumman sponsored Capstone project ‘LockTalk’, evaluates the technical abilities of automated file scanning methods within messaging platforms like Slack, Microsoft Teams, or our own developed platform LockTalk. This paper investigates a variety of scanning methods and their applications, with particular emphasis on comparing the qualities of static scanning, used in signature-based detection, and dynamic scanning with heuristics. Furthermore, this paper investigates the differences and advantages of both End-to-End Encryption (E2EE), …

Using Ai For Data Loss Prevention, Camden A. Wright

Theses/Capstones/Creative Projects

Data Loss Prevention (DLP) systems play a critical role in protecting modern systems that handle sensitive information from both accidental and malicious exposure. Traditional DLP approaches often rely on static rules and methods that can struggle to adapt to complex and evolving data patterns. This paper presents a hybrid DPL system that integrates machine learning-based message classification, rule based policy enforcement, and context-aware access control to improve both detection accuracy and decision reliability. In addition, the system introduces a second stage access control model that evaluates user context, including role of clearance level and job title to determine whether access …