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Patterns In Winter Stonefly Distribution Along A River Continuum And Land-Use Gradient In Northwest Arkansas Streams, Zachary Tipton Dec 2023

Patterns In Winter Stonefly Distribution Along A River Continuum And Land-Use Gradient In Northwest Arkansas Streams, Zachary Tipton

Graduate Theses and Dissertations

Freshwater ecosystems are facing a crisis with extinction rates of aquatic species exceeding those of their terrestrial counterparts by up to fivefold. This decline is predominantly attributed to evolving land use patterns within watersheds, leading to chemical and physical transformations in freshwater habitats. Northwest Arkansas (NWA) represents one of the fastest-growing regions in the United States, undergoing substantial shifts in land use. Consequently, the status of aquatic life in this region remains uncertain. Addressing this concern, the latest Arkansas Wildlife Action Plan emphasizes the necessity of distribution and population data to guide conservation efforts for Species of Greatest Conservation Need …

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Geospatial Analysis Of Weathering And Recession On Architectural Limestone At The 1891 Powerhouse/Icehouse In Eureka Springs, Arkansas, Stuart Bruce Wright Dec 2023

Geospatial Analysis Of Weathering And Recession On Architectural Limestone At The 1891 Powerhouse/Icehouse In Eureka Springs, Arkansas, Stuart Bruce Wright

Graduate Theses and Dissertations

The objective of this study of the architectural limestone of the 1891 Powerhouse/Icehouse in Eureka Springs, Arkansas was to analyze the environmental factors that influenced the deterioration and surface recession of this historical stone structure. The focus of this research was to examine and establish a baseline study that may assist in future monitoring and documentation of this historic limestone structure on stone weathering. A replicable methodology was specifically created toward this baseline research in hopes that it represented a solid baseline study. Observations and data analyses revealed the relationship between the architectural limestone building structure and the dominating recession …

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Thermodynamics And Kinetics Analyses Of Clc-Ec1 Dimerization Reaction In Lipid Bilayers, Taeho Lee Dec 2023

Thermodynamics And Kinetics Analyses Of Clc-Ec1 Dimerization Reaction In Lipid Bilayers, Taeho Lee

Arts & Sciences Graduate Student Theses and Dissertations

The efforts of this thesis are directed towards understanding the thermodynamics and kinetics underlying the dimerization reaction of a chloride/proton antiporter membrane protein, CLC-ec1, in lipid membranes. Due to the inherent challenges of working with membrane proteins, thermodynamic and kinetic information for the protein association reactions in membranes has been historically limited. The research presented in this thesis demonstrates the technological advancements for these measurements in a model membrane protein system, thereby setting an important milestone for the field. Since CLC-ec1 dimerizes via a greasy, membrane embedded binding interface, the physical driving forces involved in this reaction were unknown. It …

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Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America, Ahmed Kandeil, Christopher Patton, Jeremy C. Jones, Trushar Jeevan, Walter N. Harrington, Sanja Trifkovic, Jon P. Seiler, Thomas Fabrizio, Karlie Woodard, Jasmine C. Turner, Jeri Carol Crumpton, Lance Miller, Adam Rubrum, Jennifer Debeauchamp, Charles J. Russell, Elena A. Govorkova, Peter Vogel, Mia Kim-Torchetti, Yohannes Berhane, David Stallknecht, Rebecca Poulson, Lisa Kercher, Richard J. Webby Dec 2023

Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America, Ahmed Kandeil, Christopher Patton, Jeremy C. Jones, Trushar Jeevan, Walter N. Harrington, Sanja Trifkovic, Jon P. Seiler, Thomas Fabrizio, Karlie Woodard, Jasmine C. Turner, Jeri Carol Crumpton, Lance Miller, Adam Rubrum, Jennifer Debeauchamp, Charles J. Russell, Elena A. Govorkova, Peter Vogel, Mia Kim-Torchetti, Yohannes Berhane, David Stallknecht, Rebecca Poulson, Lisa Kercher, Richard J. Webby

United States Department of Agriculture Wildlife Services: Staff Publications

Highly pathogenic avian influenza A(H5N1) viruses of clade 2.3.4.4b underwent an explosive geographic expansion in 2021 among wild birds and domestic poultry across Asia, Europe, and Africa. By the end of 2021, 2.3.4.4b viruses were detected in North America, signifying further intercontinental spread. Here we show that the western movement of clade 2.3.4.4b was quickly followed by reassortment with viruses circulating in wild birds in North America, resulting in the acquisition of different combinations of ribonucleoprotein genes. These reassortant A(H5N1) viruses are genotypically and phenotypically diverse, with many causing severe disease with dramatic neurologic involvement in mammals. The proclivity of …

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Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman Dec 2023

Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman

United States Department of Agriculture Wildlife Services: Staff Publications

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …

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A Transcriptomic Taxonomy Of Mouse Brain-Wide Spinal Projecting Neurons, Carla C Winter, Anne Jacobi, Junfeng Su, Leeyup Chung, Cindy T J Van Velthoven, Zizhen Yao, Changkyu Lee, Zicong Zhang, Shuguang Yu, Kun Gao, Geraldine Duque Salazar, Evgenii Kegeles, Yu Zhang, Makenzie C Tomihiro, Yiming Zhang, Zhiyun Yang, Junjie Zhu, Jing Tang, Xuan Song, Ryan J Donahue, Qing Wang, Delissa Mcmillen, Michael Kunst, Ning Wang, Kimberly A Smith, Gabriel E Romero, Michelle M Frank, Alexandra Krol, Riki Kawaguchi, Daniel H Geschwind, Guoping Feng, Lisa V Goodrich, Yuanyuan Liu, Bosiljka Tasic, Hongkui Zeng, Zhigang He Dec 2023

A Transcriptomic Taxonomy Of Mouse Brain-Wide Spinal Projecting Neurons, Carla C Winter, Anne Jacobi, Junfeng Su, Leeyup Chung, Cindy T J Van Velthoven, Zizhen Yao, Changkyu Lee, Zicong Zhang, Shuguang Yu, Kun Gao, Geraldine Duque Salazar, Evgenii Kegeles, Yu Zhang, Makenzie C Tomihiro, Yiming Zhang, Zhiyun Yang, Junjie Zhu, Jing Tang, Xuan Song, Ryan J Donahue, Qing Wang, Delissa Mcmillen, Michael Kunst, Ning Wang, Kimberly A Smith, Gabriel E Romero, Michelle M Frank, Alexandra Krol, Riki Kawaguchi, Daniel H Geschwind, Guoping Feng, Lisa V Goodrich, Yuanyuan Liu, Bosiljka Tasic, Hongkui Zeng, Zhigang He

Faculty, Staff and Student Publications

The brain controls nearly all bodily functions via spinal projecting neurons (SPNs) that carry command signals from the brain to the spinal cord. However, a comprehensive molecular characterization of brain-wide SPNs is still lacking. Here we transcriptionally profiled a total of 65,002 SPNs, identified 76 region-specific SPN types, and mapped these types into a companion atlas of the whole mouse brain1. This taxonomy reveals a three-component organization of SPNs: (1) molecularly homogeneous excitatory SPNs from the cortex, red nucleus and cerebellum with somatotopic spinal terminations suitable for point-to-point communication; (2) heterogeneous populations in the reticular formation with broad …

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Single-Cell Analysis Of Chromatin Accessibility In The Adult Mouse Brain, Songpeng Zu, Yang Eric Li, Kangli Wang, Ethan J Armand, Sainath Mamde, Maria Luisa Amaral, Yuelai Wang, Andre Chu, Yang Xie, Michael Miller, Jie Xu, Zhaoning Wang, Kai Zhang, Bojing Jia, Xiaomeng Hou, Lin Lin, Qian Yang, Seoyeon Lee, Bin Li, Samantha Kuan, Hanqing Liu, Jingtian Zhou, Antonio Pinto-Duarte, Jacinta Lucero, Julia Osteen, Michael Nunn, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Zihan Wang, Jingbo Shang, M Margarita Behrens, Joseph R Ecker, Allen Wang, Sebastian Preissl, Bing Ren Dec 2023

Single-Cell Analysis Of Chromatin Accessibility In The Adult Mouse Brain, Songpeng Zu, Yang Eric Li, Kangli Wang, Ethan J Armand, Sainath Mamde, Maria Luisa Amaral, Yuelai Wang, Andre Chu, Yang Xie, Michael Miller, Jie Xu, Zhaoning Wang, Kai Zhang, Bojing Jia, Xiaomeng Hou, Lin Lin, Qian Yang, Seoyeon Lee, Bin Li, Samantha Kuan, Hanqing Liu, Jingtian Zhou, Antonio Pinto-Duarte, Jacinta Lucero, Julia Osteen, Michael Nunn, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Zihan Wang, Jingbo Shang, M Margarita Behrens, Joseph R Ecker, Allen Wang, Sebastian Preissl, Bing Ren

Faculty, Staff and Student Publications

Recent advances in single-cell technologies have led to the discovery of thousands of brain cell types; however, our understanding of the gene regulatory programs in these cell types is far from complete1-4. Here we report a comprehensive atlas of candidate cis-regulatory DNA elements (cCREs) in the adult mouse brain, generated by analysing chromatin accessibility in 2.3 million individual brain cells from 117 anatomical dissections. The atlas includes approximately 1 million cCREs and their chromatin accessibility across 1,482 distinct brain cell populations, adding over 446,000 cCREs to the most recent such annotation in the mouse genome. The mouse brain cCREs are …

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Brain-Wide Correspondence Of Neuronal Epigenomics And Distant Projections, Jingtian Zhou, Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett, Zihao Peng, Wubin Ding, Angeline Rivkin, Will N Lagos, Elora Williams, Cheng-Ta Lee, Paula Assakura Miyazaki, Andrew Aldridge, Qiurui Zeng, J L Angelo Salinda, Naomi Claffey, Michelle Liem, Conor Fitzpatrick, Lara Boggeman, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Jordan Altshul, Mia A Kenworthy, Cynthia Valadon, Joseph R Nery, Rosa G Castanon, Neelakshi S Patne, Minh Vu, Mohammad Rashid, Matthew Jacobs, Tony Ito, Julia Osteen, Nora Emerson, Jasper Lee, Silvia Cho, Jon Rink, Hsiang-Hsuan Huang, António Pinto-Duartec, Bertha Dominguez, Jared B Smith, Carolyn O'Connor, Hongkui Zeng, Shengbo Chen, Kuo-Fen Lee, Eran A Mukamel, Xin Jin, M Margarita Behrens, Joseph R Ecker, Edward M Callaway Dec 2023

Brain-Wide Correspondence Of Neuronal Epigenomics And Distant Projections, Jingtian Zhou, Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett, Zihao Peng, Wubin Ding, Angeline Rivkin, Will N Lagos, Elora Williams, Cheng-Ta Lee, Paula Assakura Miyazaki, Andrew Aldridge, Qiurui Zeng, J L Angelo Salinda, Naomi Claffey, Michelle Liem, Conor Fitzpatrick, Lara Boggeman, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Jordan Altshul, Mia A Kenworthy, Cynthia Valadon, Joseph R Nery, Rosa G Castanon, Neelakshi S Patne, Minh Vu, Mohammad Rashid, Matthew Jacobs, Tony Ito, Julia Osteen, Nora Emerson, Jasper Lee, Silvia Cho, Jon Rink, Hsiang-Hsuan Huang, António Pinto-Duartec, Bertha Dominguez, Jared B Smith, Carolyn O'Connor, Hongkui Zeng, Shengbo Chen, Kuo-Fen Lee, Eran A Mukamel, Xin Jin, M Margarita Behrens, Joseph R Ecker, Edward M Callaway

Faculty, Staff and Student Publications

Single-cell analyses parse the brain’s billions of neurons into thousands of ‘cell-type’ clusters residing in different brain structures1. Many cell types mediate their functions through targeted long-distance projections allowing interactions between specific cell types. Here we used epi-retro-seq2 to link single-cell epigenomes and cell types to long-distance projections for 33,034 neurons dissected from 32 different regions projecting to 24 different targets (225 source-to-target combinations) across the whole mouse brain. We highlight uses of these data for interrogating principles relating projection types to transcriptomics and epigenomics, and for addressing hypotheses about cell types and connections related to genetics. …

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Single-Cell Dna Methylome And 3d Multi-Omic Atlas Of The Adult Mouse Brain, Hanqing Liu, Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube, Wei Tian, Mia Kenworthy, Jordan Altshul, Joseph R Nery, Huaming Chen, Rosa G Castanon, Songpeng Zu, Yang Eric Li, Jacinta Lucero, Julia K Osteen, Antonio Pinto-Duarte, Jasper Lee, Jon Rink, Silvia Cho, Nora Emerson, Michael Nunn, Carolyn O'Connor, Zhanghao Wu, Ion Stoica, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Chongyuan Luo, Jesse R Dixon, Hongkui Zeng, Bing Ren, M Margarita Behrens, Joseph R Ecker Dec 2023

Single-Cell Dna Methylome And 3d Multi-Omic Atlas Of The Adult Mouse Brain, Hanqing Liu, Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube, Wei Tian, Mia Kenworthy, Jordan Altshul, Joseph R Nery, Huaming Chen, Rosa G Castanon, Songpeng Zu, Yang Eric Li, Jacinta Lucero, Julia K Osteen, Antonio Pinto-Duarte, Jasper Lee, Jon Rink, Silvia Cho, Nora Emerson, Michael Nunn, Carolyn O'Connor, Zhanghao Wu, Ion Stoica, Zizhen Yao, Kimberly A Smith, Bosiljka Tasic, Chongyuan Luo, Jesse R Dixon, Hongkui Zeng, Bing Ren, M Margarita Behrens, Joseph R Ecker

Faculty, Staff and Student Publications

Cytosine DNA methylation is essential in brain development and is implicated in various neurological disorders. Understanding DNA methylation diversity across the entire brain in a spatial context is fundamental for a complete molecular atlas of brain cell types and their gene regulatory landscapes. Here we used single-nucleus methylome sequencing (snmC-seq3) and multi-omic sequencing (snm3C-seq)1 technologies to generate 301,626 methylomes and 176,003 chromatin conformation–methylome joint profiles from 117 dissected regions throughout the adult mouse brain. Using iterative clustering and integrating with companion whole-brain transcriptome and chromatin accessibility datasets, we constructed a methylation-based cell taxonomy with 4,673 cell groups and 274 …

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Activity Patterns Of Whiptail Lizards (Aspidoscelis) Found In The Northern Chihuahuan Desert, Guillermo Alvarez Dec 2023

Activity Patterns Of Whiptail Lizards (Aspidoscelis) Found In The Northern Chihuahuan Desert, Guillermo Alvarez

Open Access Theses & Dissertations

Traditional lizard pitfall traps were modified to allow organisms to escape, while collecting valuable ecological data. Modified camera traps were capable of detecting the same species as traditional traps in a semi-arid environment, without posing the associated mortality risks. Pitfall-camera traps were used to sample the activity of the Side-blotched Lizard (Uta stansburiana) and the Southwestern Fence Lizard (Sceloporus cowlesi) in an urban wetland during four continuous years. Evaluations on activity pattern and the activity overlap between the two species revealed extensive overlap, with minor but significant seasonal shifts mediating coexistence. Traps were also effective at detecting other reptiles, invertebrates, …

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Towards A Model Of The Mapping Between English And Spanish Prosody, Jonathan Avila Dec 2023

Towards A Model Of The Mapping Between English And Spanish Prosody, Jonathan Avila

Open Access Theses & Dissertations

Current speech-to-speech translation systems face challenges in effectively translating the nuances of prosody, which plays a pivotal role in conveying speaker intent and stance in dialog. This limitation restricts cross-lingual communication, especially in situations demanding deeper interpersonal understanding. To address this, this research delves into the relationships between prosody and its pragmatic functions, in English and Spanish. First, I discuss a data collection protocol in which bilingual speakers re-enact utterances from an earlier conversation in their other language, then describe an English-Spanish corpus, consisting of 3816 matched utterance pairs. Second, I describe a prosodic dissimilarity metric based on Euclidean distance …

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Upcyclying Of Polyethylene Terephtalate By Addition Of Thermoplastic Elastomer, Diego Francisco Bermudez Dec 2023

Upcyclying Of Polyethylene Terephtalate By Addition Of Thermoplastic Elastomer, Diego Francisco Bermudez

Open Access Theses & Dissertations

Continual overconsumption of single-use plastics has generated challenges of solid waste management across the United States. Common plastic waste management solutions, such as landfill, have caused the migration of contaminants into the environment consequently affecting not only the health of wildlife, but also that of human beings. Alternative strategies for the handling of single-use plastic such as polyethylene terephthalate (PET), used in the food packaging industry, can ultimately help mitigate the noxious consequences of single-use plastics affecting entire ecosystems. This study demonstrates a potential avenue of materials upcycling by studying the effects of coupling PET with the thermoplastic elastomer styrene-ethylene-butylene-styrene …

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Study Of Human Circadian Protein (Hrory) And Lipid-Protein Interaction In Giant Virus (Pbcv-1), Laila Noor Dec 2023

Study Of Human Circadian Protein (Hrory) And Lipid-Protein Interaction In Giant Virus (Pbcv-1), Laila Noor

Open Access Theses & Dissertations

Project 1: Circadian rhythm is a 24-hour cycle that regulates physical and behavioral changes such as sleep-wake patterns in humans, tailoring the daily light and dark changes. Long-term disruption in circadian rhythms can cause sleep disorders such as sleep apnea, insomnia, et al. Limited research has been done on potential drugs to treat against circadian related sleep disorders. Inside the cell at molecular level, the circadian rhythm is regulated by interlocked time-delayed feedback loops, which involve positive and negative transcriptional regulators. Experimental results showed transcriptional factors Retinoic Acid Receptor-Related Orphan Receptors (RORs) improve the stability and functionality of the circadian …

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Status Of The Western Australian Pastoral Rangelands 2023: Total Vegetative Cover And Cover Risk, Department Of Primary Industries And Regional Development Dec 2023

Status Of The Western Australian Pastoral Rangelands 2023: Total Vegetative Cover And Cover Risk, Department Of Primary Industries And Regional Development

Natural resources published reports

The Department of Primary Industries and Regional Development (DPIRD) monitors and reports on the vegetation condition of pastoral rangelands in Western Australia. This 2023 short report uses remotely sensed total cover data available to the end of October 2023, rainfall data to the end of November 2023 and Stock Return data reported in 2022 (the most recent available) to determine cover risk. Cover risk at the land conservation district (LCD) level is an indicator of the likelihood of total cover declining to, or remaining at, low or very low levels. Total cover and cover risk may not be indicative of …

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Analysis And Assessment Of Land Use / Land Cover Impact On Human And Natural Ecosystems In The Salton Sea Watershed, 2013 - 2021, Diego Ramirez Dec 2023

Analysis And Assessment Of Land Use / Land Cover Impact On Human And Natural Ecosystems In The Salton Sea Watershed, 2013 - 2021, Diego Ramirez

Electronic Theses, Projects, and Dissertations

This study represents an interdisciplinary analysis of the changing landscape of the Salton Sea Watershed from 2013 to 2021, focusing on land use land cover (LULC) category changes, climatic variations, and socioeconomic factors. The findings of this research show a shift in land cover categories, portrayed by the changes of natural landscapes and vegetative areas into rapidly increasing urbanized expansion and increased impervious surfaces. These changes pose concerns about increased temperature in the region, a decrease in overall water availability and groundwater infiltration, and an increase in pollution. The study explores 10 sub-watersheds within the Salton Sea Watershed basin, focusing …

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Gc-448 Project Title: Discover, Learn, And Protect: A Mobile App For Informal Stem Learning About Local Biodiversity And Environmental Issues., Elvin Mccray, David Y. Appah, Adedunmola Banu, Binh Tran, Zenya Tucker Nov 2023

Gc-448 Project Title: Discover, Learn, And Protect: A Mobile App For Informal Stem Learning About Local Biodiversity And Environmental Issues., Elvin Mccray, David Y. Appah, Adedunmola Banu, Binh Tran, Zenya Tucker

C-Day Computing Showcase

Our team assignment for this project was to create a mobile application that offers informal STEM learning about local biodiversity and environmental issues. Dr. Ying Xie, Professor in the College of Computing and Software Engineering (CCSE) is the owner of this project, who also laid out required features and provided necessary information, guidance, and advice for the project development. The core function of this application is to empower users to explore, identify and gain insights into the plant and animal species native to their region. Leveraging the capabilities of their smartphone’s camera, users can effortlessly scan, record, or locate local …

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Uc-523: It 4983 Server Hardening, Manuel Chico, Gilbert Vuong, Harrison Jones, George Barber Nov 2023

Uc-523: It 4983 Server Hardening, Manuel Chico, Gilbert Vuong, Harrison Jones, George Barber

C-Day Computing Showcase

The team was assigned the responsibility of securing a web server. This business website is hosted on a technology stack comprising Apache, MariaDB, Red Hat Linux, and PHP. Our initial task involves conducting a comprehensive assessment of the provided network to identify vulnerabilities and assess potential risks. Subsequently, we will develop a robust security policy plan in alignment with the standards set forth by the National Institute of Standards and Technology (NIST) and industry best practices. Once the plan was approved, our group will proceed to implement the recommended changes to fortify the network, ensuring it complies with industry best …

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Uc-413 I Spy... Water Safety, Caden M. Robertson, Danny Winters, Denice Jaquez, Tahj Brown, Maksims D. L'Hernault Nov 2023

Uc-413 I Spy... Water Safety, Caden M. Robertson, Danny Winters, Denice Jaquez, Tahj Brown, Maksims D. L'Hernault

C-Day Computing Showcase

I Spy Water Safety is a game that teaches people about the importance of water safety around a lake. Our goal is to teach people proper water safety etiquette and lower the amount of water-related incidents.

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Uc-508 Memories: Echoes Of Resilience, Ethan J Hester, Joshua Tyler Padgett, Katelyn R Freeman, Sarah Crosby, Keith W Rhymer Nov 2023

Uc-508 Memories: Echoes Of Resilience, Ethan J Hester, Joshua Tyler Padgett, Katelyn R Freeman, Sarah Crosby, Keith W Rhymer

C-Day Computing Showcase

Memories: Echoes of Resilience is a first-person narrative experience that takes players through different experiences of a boy with autism. The game aims to show how everyday interactions can be different to someone with autism. Experiences such as making friends in school, being in overstimulating environments, or managing adult life are experiences we want to simulate for the player. The player will be able to interact with the world around them but will also have to be aware of how their environment impacts them, so they don’t become overstimulated.

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Lung Dosimetry Model Of Inhaled 222rn For Workers At Selected Building Material Factories In Erbil City, Iraq, Sardar Qader Othman, Ali Hassan Ahmed, Sarbaz Ibrahim Mohammed Nov 2023

Lung Dosimetry Model Of Inhaled 222rn For Workers At Selected Building Material Factories In Erbil City, Iraq, Sardar Qader Othman, Ali Hassan Ahmed, Sarbaz Ibrahim Mohammed

Polytechnic Journal

Radon gas can cause lung harm, leading to extensive research on the biological effects of radon exposure in human lungs under various environmental conditions. The study estimates radon progeny doses for workers in Erbil city's building materials industries, focusing on alpha particle energy deposition, particle clearance, and lung deposition. Using a home condition of 1 Bq.m-3, radon progeny particle-absorbed doses in the trachea, bronchi, bronchioles, alveolar-interstitial sections, and lungs were determined in the first scenario. The 1 Bq.m-3 is replaced with the radon level for each factory to prepare its atmosphere in the second scenario. For the first scenario, the …

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Machine Learning Based Bioinformatics Analysis Of Intron Usage Alterations And Metabolic Regulation In Adipose Browning, Hamza Umut Karakurt, Pinar Pi̇r Nov 2023

Machine Learning Based Bioinformatics Analysis Of Intron Usage Alterations And Metabolic Regulation In Adipose Browning, Hamza Umut Karakurt, Pinar Pi̇r

Turkish Journal of Electrical Engineering and Computer Sciences

Adipose tissue is the major energy depot of the body and is considered an endocrine organ. Adipose tissue involves many different cell types, first and foremost, the adipocytes. White adipose cells that store fat and brown adipocytes that take part in lipid oxidation and heat generation are the most common cell types in adipose tissue. Even though brown adipocytes which have a high number of mitochondria and high fat-burning capacity are rare in adults, they are abundant in newborns and rodents. White adipocytes can gain a temporal brown-like character with a process called browning, which can be induced with cold …

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Fuzzycsampling: A Hybrid Fuzzy C-Means Clustering Sampling Strategy For Imbalanced Datasets, Abdullah Maraş, Çi̇ğdem Erol Nov 2023

Fuzzycsampling: A Hybrid Fuzzy C-Means Clustering Sampling Strategy For Imbalanced Datasets, Abdullah Maraş, Çi̇ğdem Erol

Turkish Journal of Electrical Engineering and Computer Sciences

Classification model with imbalanced datasets is recently one of the most researched areas in machine learning applications since they induce to the emergence of low-performing machine learning models. The imbalanced datasets occur if target variables have an uneven number of examples in a dataset. The most prevalent solutions to imbalanced datasets can be categorized as data preprocessing, ensemble techniques, and cost-sensitive learning. In this article, we propose a new hybrid approach for binary classification, named FuzzyCSampling, which aims to increase model performance by ensembling fuzzy c-means clustering and data sampling solutions. This article compares the proposed approaches' results not only …

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Painting Our Treescapes: A Visual, Gretel Olson, Ingrid Olson, Stephanie Schuurman-Olson Nov 2023

Painting Our Treescapes: A Visual, Gretel Olson, Ingrid Olson, Stephanie Schuurman-Olson

Occasional Paper Series

Two children (ages 6 and 9) represent an afternoon spent in their urban, wintery treescape through visual art, photo documentation, and written narrative. The first piece, "My Imaginary Forest", considers the seasons, animals, and issues of artistic representation of nature. The second piece describes the relationship between a favourite tree and a child, and considers others -- both present and future -- who also occupy "Our Knotty Tree". All of the words, visual art, and photo selection are those of the children.

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Sustainable Energy Distribution Methods At The Azraq And Za’Atari Refugee Camps In Jordan: A Refugee Perspective, Lucie Lagodich Nov 2023

Sustainable Energy Distribution Methods At The Azraq And Za’Atari Refugee Camps In Jordan: A Refugee Perspective, Lucie Lagodich

Capstone Collection

The looming climate change crisis requires research and development of mitigation strategies to protect those most vulnerable. This study uses semi-structured interviews to capture the refugee perspective of the successes and shortcomings of large-scale solar farm projects installed at the Azraq and Za’atari Syrian refugee camps in the west and north of Jordan, respectively. These perspectives may be utilized to improve each camp's current renewable energy distribution system. Results suggest that at both camps the current renewable energy systems are deeply flawed with limited hours with rampant distrust among camp residents in the management of the solar farms. Most refugees …

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Vrmovian - An Immersive Data Annotation Tool For Visual Analysis Of Human Interactions In Vr, Isaac Browen Nov 2023

Vrmovian - An Immersive Data Annotation Tool For Visual Analysis Of Human Interactions In Vr, Isaac Browen

Student Scholar Symposium Abstracts and Posters

Understanding human behavior in virtual reality (VR) is a key component for developing intelligent systems to enhance human focused VR experiences. The ability to annotate human motion data proves to be a very useful way to analyze and understand human behavior. However, due to the complexity and multi-dimensionality of human activity data, it is necessary to develop software that can display the data in a comprehensible way and can support intuitive data annotation for developing machine learning models able recognize and assist human motions in VR (e.g., remote physical therapy). Although past research has been done to improve VR data …

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Stability, Longevity, And Regulatory Bionetworks, Christian N. K. Anderson Nov 2023

Stability, Longevity, And Regulatory Bionetworks, Christian N. K. Anderson

Theses and Dissertations

Genome-wide studies of diseases and chronic conditions frequently fail to uncover marked or consistent differences in RNA or protein concentrations. However, the developing field of kinetic proteomics has made promising discoveries in differences in the turnover rate of these same proteins, even when concentrations were not necessarily different. The situation can theoretically be modeled mathematically using bifurcation equations, but uncovering the proper form of these is difficult. To this end, we developed TWIG, a method for characterizing bifurcations that leverages information geometry to identify drivers of complex systems. Using this, we characterized the bifurcation and stability properties of all 132 …

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Spatial And Temporal Variations Of Microplastics Within Humboldt Bay, California, Isabelle M. Marcus, Tamara B. Barriquand, Rebecca M. Thompson, Bennett C. Hosselkus, Cole T. Hutson, Michael Jacobs, Connor Mcneil, Leah Newton, Stephanie M. Olivarez, Jeffrey Abell Nov 2023

Spatial And Temporal Variations Of Microplastics Within Humboldt Bay, California, Isabelle M. Marcus, Tamara B. Barriquand, Rebecca M. Thompson, Bennett C. Hosselkus, Cole T. Hutson, Michael Jacobs, Connor Mcneil, Leah Newton, Stephanie M. Olivarez, Jeffrey Abell

CSU Journal of Sustainability and Climate Change

This study aimed to quantify microplastic (MP) concentration and analyze the spatial and temporal variabilities of the concentrations during the tidal cycle in Humboldt Bay, California. To get an approximation of MP concentration, both water and sediment samples were taken at five different stations, twice during one tidal cycle. Sampling was conducted during two different cruises, on the 19th and 21st of September 2020. The samples were processed in the lab using a density separation procedure and filtration. MP concentrations in the different samples were determined using an average optical microscopy count. Comparison of the water column MP concentrations during …

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Water Chemistry And Pigment Composition Of 13 Lakes And Ponds In Maritime Antarctica, Korhan Özkan Nov 2023

Water Chemistry And Pigment Composition Of 13 Lakes And Ponds In Maritime Antarctica, Korhan Özkan

Turkish Journal of Earth Sciences

The Antarctic Peninsula has been rapidly warming, resulting in changes to the abundance and surface cover of terrestrial aquatic ecosystems, as well as their ecosystem structure and function. Therefore, comparative studies of aquatic ecosystems across large latitudinal gradients can be useful in better understanding these changes and making more reliable predictions regarding the consequences of climate change. During Turkish Antarctic Expeditions in 2018 and 2019, samples were collected from 10 lakes and 3 ponds across Maritime Antarctica (north-western coasts of the Antarctic Peninsula). These lakes and ponds were located on Ardley, Robert, Livingstone, Galindez, and Horseshoe islands, covering a latitudinal …

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Exploring Crowdsourcing Accountability For Mapping Antarctica: A Case Study Using 5 Years Of Social Media Data, Ayşe Gi̇z Gülnerman Gengeç Nov 2023

Exploring Crowdsourcing Accountability For Mapping Antarctica: A Case Study Using 5 Years Of Social Media Data, Ayşe Gi̇z Gülnerman Gengeç

Turkish Journal of Earth Sciences

The continent of Antarctica is one of the most challenging regions in terms of generating and updating geodata. Extensive research has been conducted on geodata acquisition, primarily focusing on earth observation satellites and local surveys in polar regions. Earth observation satellites offer limited spatial, temporal, and semantic data, while local surveys are constrained by polar regions' size and challenging conditions. This article delves into the crowdsourced data, aiming to significantly enhance geodata contribution in polar regions beyond current methods. To our knowledge, this study is the first of its kind to address social media data, a form of crowdsourcing, specifically …

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Effect Of Different Pre-Growth Temperatures On The Survival Kinetics Of Salmonella Enterica And Listeria Monocytogenes In Fresh-Cut Salad During Refrigerated Storage, Avninder Kaur, Veerachandra K. Yemmireddy Nov 2023

Effect Of Different Pre-Growth Temperatures On The Survival Kinetics Of Salmonella Enterica And Listeria Monocytogenes In Fresh-Cut Salad During Refrigerated Storage, Avninder Kaur, Veerachandra K. Yemmireddy

School of Earth, Environmental, & Marine Sciences Faculty Publications

The effect of the pre-growth temperature of bacterial cultures on their subsequent survival kinetics in fresh-cut produce during refrigerated storage was investigated in this study. Three-strain cocktails of Listeria monocytogenes and Salmonella enterica, cultured at different growth temperatures (4, 21, and 37 °C) were inoculated on fresh-cut mixed salad and on individual produce in the mixed salad. The inoculated samples were stored at 4 °C and 80 ± 2% relative humidity (RH) for up to 72 h and the growth, survival, or death kinetics were determined at regular intervals. The results indicate that depending upon the type of pathogen …

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