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Association Between Viral Infections And Glioma Risk: A Two-Sample Bidirectional Mendelian Randomization Analysis, Sheng Zhong, Wenzhuo Yang, Zhiyun Zhang, Yangyiran Xie, Lin Pan, Jiaxin Ren, Fei Ren, Yifan Li, Haoqun Xie, Hongyu Chen, Davy Deng, Jie Lu, Hui Li, Bo Wu, Youqi Chen, Fei Peng, Vinay K Puduvalli, Ke Sai, Yunqian Li, Ye Cheng, Yonggao Mou

Faculty, Staff and Student Publications

Background: Glioma is one of the leading types of brain tumor, but few etiologic factors of primary glioma have been identified. Previous observational research has shown an association between viral infection and glioma risk. In this study, we used Mendelian randomization (MR) analysis to explore the direction and magnitude of the causal relationship between viral infection and glioma.

Methods: We conducted a two-sample bidirectional MR analysis using genome-wide association study (GWAS) data. Summary statistics data of glioma were collected from the largest meta-analysis GWAS, involving 12,488 cases and 18,169 controls. Single-nucleotide polymorphisms (SNPs) associated with exposures were used as instrumental …

Oregon State Rank Assessment For Bonneville Redside Shiner (Richardsonius Balteatus Hydrophlox), Misty Nelson

Institute for Natural Resources Publications

Oregon state conservation status assessment for Bonnevile redside shiner (Richardsonius balteatus hydrophlox) using NatureServe methodology, 2023.

Development Of An App For The Kalamazoo Nature Center, Ernest Au

Honors Theses

Kalamazoo Nature Center (KNC), which has been recognized by its peers as one of the top nature centers in the country, is home to over 14 miles of hiking trails winding through woods, wetlands, and prairies. There are numerous places/plots in KNC that have an interesting and impressive history besides being home to a variety of animals and hundreds of wildflowers and other plant life. To improve the visitor’s experience at KNC, we will design a software app via the senior capstone project at the department of Computer Science at WMU. As the first step towards establishing a reference model …

Overcoming Foreign Language Anxiety In An Emotionally Intelligent Tutoring System, Daneih Ismail

College of Computing and Digital Media Dissertations

Learning a foreign language entails cognitive and emotional obstacles. It involves complicated mental processes that affect learning and emotions. Positive emotions such as motivation, encouragement, and satisfaction increase learning achievement, while negative emotions like anxiety, frustration, and confusion may reduce performance. Foreign Language Anxiety (FLA) is a specific type of anxiety accompanying learning a foreign language. It is considered a main impediment that hinders learning, reduces achievements, and diminishes interest in learning.

Detecting FLA is the first step toward reducing and eventually overcoming it. Previously, researchers have been detecting FLA using physical measurements and self-reports. Using physical measures is direct …

An Efficient Optimal Solution Method For Neutrosophic Transport Models: Analysis, Improvements, And Examples, Maissam Jdid, Florentin Smarandache

Neutrosophic Systems with Applications

Transport issues aim to determine the number of units that will be transferred from the production centers to consumption areas so that the cost of transportation is as low as possible, taking into account the conditions of supply and demand. Due to the great importance of these issues and to obtain more accurate results that take into account all circumstances, we conducted two research studies. In the first research, we presented a formulation of neutrosophic transport issues, and in the second research, we presented some ways to find a preliminary solution to these issues, but we do not know whether …

Prevalence, Faunal Composition, And Vertical Distribution Of Bioluminescence In The Pelagic Gulf Of Mexico: Fishes, Crustaceans, Cephalopods And Gelatinous Megaplankton, Devynne M. Brown

All HCAS Student Capstones, Theses, and Dissertations

Bioluminescence is the phenomenon of light emission by living organisms. It occurs through a chemical reaction within an organism and serves various purposes. The diversity of bioluminescent capabilities and occurrence in unrelated taxa suggest that bioluminescence has evolved independently numerous times amongst taxa thriving in certain environments. One such environment is the deep ocean, where little to no sunlight penetrates the water column, specifically in the mesopelagic (200-1000 m depth) and bathypelagic (> 1000 m) zones. The mesopelagic and bathypelagic zones have been extensively sampled and well documented in the Gulf of Mexico (GoM), one of the few places globally …

Evaluating The Effectiveness Of The Internal Transcribed Sequences (Its) As Dna Barcodes To Estimate Fungal Diversity, Jailisa Linares

All HCAS Student Capstones, Theses, and Dissertations

Universal phylogenetic markers such as the nuclear ribosomal internal transcribed sequences (ITS), specifically ITS1 and ITS2, are routinely used to estimate fungal diversity in environmental samples. However, numerous studies report differences in the performance and efficacy of ITS1 and ITS2 in documenting fungal diversity. To better understand the implications of using ITS1 versus ITS2, a comprehensive representation of the diverse fungal taxa was necessary to conduct a meta-analysis of their use across multiple fungal taxa. In order to address this, a thorough literature review was conducted to compare and contrast the use of ITS1 and ITS2 as effective DNA barcodes. …

Activity Patterns Of The Endangered Amargosa Vole (Microtus Californicus Scripensis), Austin N. Roy, Anna D. Rivera Roy, Deana L. Clifford, Janet E. Foley

School of Earth, Environmental, & Marine Sciences Faculty Publications

Examining the activity patterns of wildlife is an important aspect of understanding the ecology of a species and may be especially important for species of conservation concern. We used remotely triggered cameras to describe the daily and seasonal activity patterns and examine ecological factors that influence the activity of the Amargosa Vole (Microtus californicus scirpensis), a California endemic listed federally and by the state as Endangered, and is a marsh habitatspecialist in the Mojave Desert. We found that vole activity was greatest during crepuscular periods, followed by nocturnal and diurnal periods. We saw strong seasonal effects, with the highest activity …

Nitrogen Fertilization And Harvest Management Improve Forage And Crude Protein Content In Crabgrass, B. C. Pedreira, I. T. M. D. Barros, J. I. Yasuoka, D. Helwig, J. K. Farney, G. F. Sassenrath

IGC Proceedings (1977-2023)

Crabgrass (Digitaria spp.) is an annual summer grass that can provide high-quality forage, but optimal management strategies are unclear. Our objective was to compare the yield and quality of crabgrass (Mojo and Quick-N-Big) under different nitrogen rates and harvest management. The experimental design was a randomized complete block with five treatments and three replications for each crabgrass variety, totaling fifteen experimental units for both Mojo and Quick-N-Big, in adjacent sites. Treatments were nitrogen rates (0, 100, and 200 lb N/acre) and harvest management (cut once or twice per year) for two growing seasons (2020 and 2021). Total forage accumulation …

Chemical Composition And Microbial Diversity Of The Silage Of Forage Peanut Harvested At Two Regrowth Ages And Treated With Microbial Inoculants, A. J. S. Macêdo, O. G. Pereira, V. P. Da Silva, A. J. Dos Anjos, W. Alves, H. R. O. Santos, K. G. Ribeiro

IGC Proceedings (1977-2023)

The objective of this study was to evaluate the chemical composition and microbial diversity of the silage of forage peanut harvested at 40 and 80 days of regrowth and treated with microbial inoculants. The inoculants evaluated were commercial inoculant (CI) Sil-All 4×4 (Lallemand®, Brazil); the AV14.17, Lactiplantibacillus pentosus strain (ISO) isolated from alfalfa silage; and control (CTRL), without inoculant. A total of 500 g of forage was ensiled in nylon-polyethylene bags (25.40 × 35.56 cm). After 60 days of fermentation, the bags were opened and silages were analyzed for dry matter (DM), mineral matter (MM), organic matter (OM), crude protein …

Industrial Hemp Forage Potential, Swarup Podder, John H. Fike, B. Wilson

IGC Proceedings (1977-2023)

Hemp (Cannabis sativa L.) has been a valuable species for humans throughout history due to its adaptability and diverse uses. Farmers are interested in hemp as a forage and feedstuff due to its unique nutritional properties and fast summer production. Moreover, the presence of cannabinoids in leaf and bud tissues may provide pharmacological benefits to animal health, productivity, and product quality under different regulatory frameworks. This study examined two hemp cultivars, Grandi and Joey, solely as forage crops, and samples were taken at different growth stages in Blacksburg, VA, USA, in 2021. The highest biomass production of 1.41 tons per …

Clovers Around The World: A Symposium In Memory And Honor Of Dr. Norman L. Taylor, Kenneth H. Quesenberry, D. Boone, B. M. Irish

IGC Proceedings (1977-2023)

Trifolium is arguably the largest and most diverse genera of herbaceous forage legumes (Zohary and Heller, 1984). Dr. Norman L. Taylor, Professor Emeritus, Department of Plant and Soil Science, University of Kentucky, deceased, was a pioneer and champion of collection and preservation of Trifolium species throughout his 57-year career. Dr. Taylor was a native of northern Kentucky, born near where this Conference is being held.

Estimating The Carrying Capacity For Habitat Of Urial Wild Sheep (Ovis Orientalis) In Tandoureh National Park, Iran, M. Rahimian, F. Tabatabaei Yazdi, Mansour Mesdaghi

IGC Proceedings (1977-2023)

In an attempt to estimate forage production and carrying capacity of wild ungulates in Tandoureh National Park of Iran, the Babanestan grassland was selected, as the typical habitat of about 200 Urial wild sheep. In order to estimate the carrying capacity of this habitat for foraging of Urial wild sheep, this habitat with an area of 132 hectares was classified as low flat (LF), high flat (HF), north aspect (NA), and south aspect (SA). Then, to estimate forage production, clipping method of comparative yield was used. In each land form, standing crop yield of five reference plots of 1-^{m2 …}

Integrating Grazing With 2,4-D And Florpyrauxifen To Control Broadleaf Weeds And Maintain Red Clover Productivity In Grass-Legume Pastures, M. J. Renz, G. M. Imhoff

IGC Proceedings (1977-2023)

In grass-legume pastures, 2,4-D-amine + florpyrauxifen-benzyl controls broadleaf weeds but red clover (Trifolium pratense L.) is eliminated. Grazing within a week prior to herbicide application is likely to reduce leaf surface area and may reduce red clover injury and maintain productivity. Experiments were conducted in 2020 and in 2021 to determine if red clover could be productive when 560 g ae ha-1 2,4-D-amine + 6.3 g ae ha^-1 of florpyrauxifen-benzyl with 1% v/v methylated seed oil applied in the spring was grazed before or after herbicide application. Grazing timings occurred 6, 4, or 2 days prior to herbicide …

Fermentation Profile Of Signal Grass Silages Intercropped With Calopo Or Fertilized With Nitrogen And Treated With Microbial Inoculant, Karina G. Ribeiro, Tâmara Chagas De Silveira, João Paulo Santos Roseira, Albert José Dos Anjos, Wagner Souza Alvez, Danielle Nascimento Coutinho, Odilon G. Pereira

IGC Proceedings (1977-2023)

Tropical grasses have characteristics that allow the occurrence of undesirable fermentations resulting in low quality silage. Inoculants can improve silage quality. Fermentation profile and microbial population of signal grass silages under four management (M), with and without microbial inoculant, were evaluated. The experiment was carried out in a 4 × 2 factorial scheme, with silages of signal grass managed without N application (control, 0N), fertilized with 50 kg ha^-1 of N (50N), fertilized with 100 kg ha^-1 of N (100N), or signal grassintercropped with calopo (Calopogonium mucunoides D.) (LEG), with inoculant (I) andwithout inoculant (WI), in a …

Evaluation Of Different Genotypes Of Teosinte (Euchlaena Mexicana) For Herbage And Seed Production In Nepal, S. Sanjyal, John G. Hampton, P. Rolston, S. Marahatta

IGC Proceedings (1977-2023)

Teosinte is highly admired by the Nepalese farmers as a summer forage crop. It is also an important crop for milking animals in the tropical world where dairy husbandry is practiced. The only Sirsa cultivar of teosinte currently grown in Nepal takes 8 to 9 months from sowing to seed harvesting, which makes growing this crop difficult for farmers with small land holdings wanting to establish winter crops. Therefore, a diversity study on eighteen teosinte accessions was conducted in CRBD design. Seventeen teosinte accessions imported from CYMMIT Mexico and one locally grown Sirsa were evaluated in order to identify if …

Yield Potential Of Co4 Napier Hybrid Bajra (Pennisetum Perpureum Schumach.) Fodder Crop Under Irrigated Conditions In India, Om Singh, Ayushi Singh, Ananya Singh, Anita Singh

IGC Proceedings (1977-2023)

A field trial on Co₄ was conducted at ICAR-IVRI, Izatnagar during 2013-14 to 2017-18 to study the effect of harvesting season/time on green, dry matter yield and morphological parameters. Data shows that yield of Co₄ was increased from first year 2013-14 to third year 2015-16 and decreased in fourth year of plantation of crop. Regrowth of ratoon crop was good as it was in first year crop, it may be concluded that crop can be grown upto 5-6 years. The crop yield of first year and second year as par with fifth year. Maximum green fodder yield 307.7 …

Concentration And Bioactivity Of Condensed Tannins And Total Phenolics Of Lespedeza Species From A Germplasm Collection, Thomas H. Terrill, V. Smith, B. Morning, E. M. Courson, James P. Muir, N. M. Cherry, J. B. Morris

IGC Proceedings (1977-2023)

Interest in ‘AU-Grazer’ sericea lespedeza (Lespedeza cuneata) as an anti-parasitic bioactive forage has been growing in the United States, but the concentration and bioactivity of tannins and other phenolics from additional accessions of L. cuneata, as well as other Lespedeza species, have not been evaluated. A study was completed to determine the concentration of extractable condensed tannins (ECT), total CT (TCT), total phenolics (TP), and protein-precipitable phenolics (PPP) of 32 accessions of L. cuneata and 16 additional Lespedeza species from a germplasm collection. The plants were established in small pots in a greenhouse and then transplanted into …

Electrochemical And Colorimetric Nanosensors For Detection Of Heavy Metal Ions: A Review, Sayo Fakayode, Charuksha Walgama, Vivian E. Fernand Narcisse, Cidya Grant

Chemistry, Physics and Astronomy Faculty Scholarship

Human exposure to acute and chronic levels of heavy metal ions are linked with various health issues, including reduced children’s intelligence quotients, developmental challenges, cancers, hypertension, immune system compromises, cytotoxicity, oxidative cellular damage, and neurological disorders, among other health challenges. The potential environmental HMI contaminations, the biomagnification of heavy metal ions along food chains, and the associated risk factors of heavy metal ions on public health safety are a global concern of top priority. Hence, developing lowcost analytical protocols capable of rapid, selective, sensitive, and accurate detection of heavy metal ions in environmental samples and consumable products is of global …

Bingroup2: Statistical Tools For Infection Identification Via Group Testing, Christopher R. Bilder, Brianna D. Hitt, Brad J. Biggerstaff, Joshua M. Tebbs, Christopher S. Mcmahan

Department of Statistics: Faculty Publications

Group testing is the process of testing items as an amalgamation, rather than separately, to determine the binary status for each item. Its use was especially important during the COVID-19 pandemic through testing specimens for SARS-CoV-2. The adoption of group testing for this and many other applications is because members of a negative testing group can be declared negative with potentially only one test. This subsequently leads to significant increases in laboratory testing capacity. Whenever a group testing algorithm is put into practice, it is critical for laboratories to understand the algorithm’s operating characteristics, such as the expected number of …

Multimodal Image Synthesis And Editing: The Generative Ai Era, Fangneng Zhan, Yingchen Yu, Rongliang Wu, Jiahui Zhang, Shijian Lu, Lingjie Liu, Adam Kortylewski, Christian Theobalt, Eric Xing

Machine Learning Faculty Publications

As information exists in various modalities in real world, effective interaction and fusion among multimodal information plays a key role for the creation and perception of multimodal data in computer vision and deep learning research. With superb power in modeling the interaction among multimodal information, multimodal image synthesis and editing has become a hot research topic in recent years. Instead of providing explicit guidance for network training, multimodal guidance offers intuitive and flexible means for image synthesis and editing. On the other hand, this field is also facing several challenges in alignment of multimodal features, synthesis of high-resolution images, faithful …

Using Remote Sensing To Determine Riparian Resilience In Beaver Dammed Versus Un-Dammed Corridors Following Whiplash Weather, Sophie Charlotte Valérie Aubry

Master of Science in Environmental Sciences and Management Projects

Beaver complexes slow and store water allowing for riparian growth which in turn fosters biodiversity, retains carbon, and enhances resistance to fires and drought. Given the benefits associated with beaver complexes and the potential they have for climate mitigation, California hopes to reintroduce beavers and restore their habitat throughout the state. However, the impact of high peak flow events on beaver complexes and their adjacent riparian corridors is less understood and requires more documentation at various spatial scales. To better understand the potential beavers may have as climate change mitigators it is important to understand beaver complex resiliency following a …

Soil Burn Severity And Environmental Covariate Effects On Soil Health Two Years Postfire In The Sierra Nevada, Julie A. Lewis

Master of Science in Environmental Sciences and Management Projects

Wildfires have been steadily increasing in both size and severity in recent decades. This global trend is most evident in California, especially the North Coast and Sierra Nevada. Although these trends are rising, there is little known about the effects of these wildfires on forest soils. Soil is the 2nd largest C sink on the planet, and the largest terrestrial bank. Without understanding the implication of rising wildfire severities on these soils, we cannot understand how to help protect this resource in the future. Due to the rapid increase in wildfire size and intensity, there is little known about the …

Why Sigmoid Transformation Helps Incorporate Logic Into Deep Learning: A Theoretical Explanation, Chitta Baral, Vladik Kreinovich

Departmental Technical Reports (CS)

Traditional neural networks start from the data, they cannot easily handle prior knowledge -- this is one of the reasons why they often take very long to train. It is desirable to incorporate prior knowledge into deep learning. For the case when this knowledge consists of propositional statements, a successful way to incorporate this knowledge was proposed in a recent paper by van Krieken et al. That paper uses the fact that a neural network does not directly return a truth value, it returns a real value -- in effect, the degree of confidence in the corresponding statement -- from …

Liquid Chromatography Mass Spectrometry Method Development For The Determination Of Β–Defensins In Bovine Milk, Elisha Ogbebor

Masters Theses & Specialist Projects

Bovine mastitis is caused by a wide range of pathogens which results in a substantial economic loss for the dairy cattle livestock industry. β-defensins are a part of the innate immune system and act as the first line of defense against mastitis in bovine. β-defensins (~6- 10kDa) are antimicrobial peptides that contain about 28 to 67 amino acids, the presence of six cysteine residues results in their three disulfide bonds and a β-sheet structure. A few β- defensins have been identified in cows based on the site of occurrence and time of expression in tissue, but not in milk. A …

Towards The Quantification Of Estrone And 17Β-Estradiol Conjugates In Dairy Cattle Urine Sorptive Stir Bar Extraction And Gas Chromatography-Mass Spectometry, S.M. Istiak Ahmed

Masters Theses & Specialist Projects

The global concern regarding the presence of compounds with estrogenic properties in the environment has grown significantly. Endocrine-disrupting compounds (EDCs) are environmental pollutants that disrupt the endocrine systems of both wildlife and humans. Estrogens, with their potent estrogenic effects, are particularly noteworthy among the various substances with endocrine-disrupting properties. They are of concern due to their prevalence in the environment, especially due to dairy waste contamination. These lipophilic compounds can accumulate in livestock fat tissues, potentially entering the human food chain. Sulfated forms of estrone and β- estriol, which exhibit a higher degree of saturation than their non-conjugated counterparts, have …

Adaptable Object And Animation System For Game Development, Isaiah Turner

Masters Theses & Specialist Projects

In contemporary times, video games have swiftly evolved into a prominent medium, excelling in both entertainment and narrative delivery, positioning themselves as significant rivals to traditional forms such as film and theater. The burgeoning popularity of gaming has led to a surge in aspiring game developers seeking to craft their own creations, driven by both commercial aspirations and personal passion. However, a common challenge faced by these individuals involves the considerable time investment required to acquire essential skills and establish a foundational framework for their projects. Accessible game development engines that offer a diverse range of fundamental features play a …

The Perception Of Natural Resource Management In Nebraska: Efforts For Cross-Boundary Collaborative Management, Daniel Morales

School of Natural Resources: Dissertations, Theses, and Student Research

Nebraska’s agricultural landscapes are rapidly changing, affecting natural resources and their successful management. I utilized two surveys and scenario planning (Chapters 1: statewide survey, 2: local survey, and 3: scenario-planning workshop) to investigate attitudes and perceptions of natural resource management and cross-boundary collaboration. My first objective focused on determining what prevents Nebraskans from addressing natural resources challenges, considering demographics amongst generations and the type of areas they live in (rural versus urban). The second objective focused on whether landowners engaged with their community in managing natural resources. The third objective was to develop alternative future scenarios for the Denton Hills …

Assessing The Evaporation Method For Soil-Water Retention Curve Development And Comparison Of Soil-Water Characteristics Across Different Tillage Practices In A Furrow-Irrigated Corn (Zea Mays L.) System, Jeferson Prass Pimentel

Graduate Theses and Dissertations

The thesis comprises three studies. The first study in this thesis (Chapter I) focused on a six-year corn field experiment to assess the influence of conservation agricultural practices on soil properties and their long-term effects on water-use efficiency and yield. Non-tillage management did not significantly reduce soil bulk density compared to conventional tillage, as no differences were observed between non-tillage and tillage systems throughout the 6-year experiment. There was no difference in total water-use efficiency among soil management practices in 2018, 2019, 2020, and 2021. Even though in one year of the study, a significant 24 kg ha-1 mm-1 improvement …

Easemarks: Using Secondary Sketch Marks To Author And Communicate Motion Interpolation, Hadrien Nguyen

Computer Science and Engineering Theses - Archive

Motion interpolation is a process where an animator transforms jerky frame transitions into rich motions that communicate anticipation, urgency, hysteresis, and even calmness. Animators leverage mathematical functions known as easing curves to modify the rate at which in-betweens are added to keyframes. While effective, easing curves are tedious to tune since they fundamentally lack the ability to encode spatial information. Inspired by timing charts and other standards from traditional cel animation, we introduce a motion animation technique where secondary marks, which we term EaseMark (e.g., hatches, loops), are used to denote motion interpolation decisions. We synthesize an EaseMark Sketching Language …