Digital Commons Network^™

Nutrient Cycling And Crop Responses On Integrated Crop-Livestock Systems, José C. B. Dubeux Jr., E. R. S. Santos, J. E. Portuguez-Acuna, L. M. D. Queiroz

IGC Proceedings (1977-2023)

Integrated crop-livestock systems (ICLS) can bring numerous benefits to crops or livestock systems, such as increase soil C sequestration, farm profitability, and provisioning of ecosystem services. In a changing world, production systems need to become more resilient and sustainable. Specialized agriculture is characterized by a high level of inputs and outputs, and oftentimes specialize in a single crop to simplify management. However, such operational systems stray away from sustainable standards. Furthermore, specialized cropping systems may face problems such as persistence of pests and diseases, loss of biodiversity, stagnant yields, development of herbicide-resistant weeds, soil erosion and consequently loss of soil …

Strategic Integration Of Grasslands Within The Agricultural Landscape: Optimizing Benefits For The Producer And Society, A. J. Duff, J. G. Franco

IGC Proceedings (1977-2023)

We provide a case study assessment, centered in the Upper Midwest region of the United States, of the economic and environmental outcomes associated with the inclusion of grasslands within dairy production systems. This farmscape design approach can be applied at farm, watershed, and regional scales, and has the potential to significantly improve the resilience of our agricultural lands. Ruminant livestock are uniquely adapted to utilize perennial forages, and the strategic integration of grasslands within the agricultural landscape can improve producer return on investment while generating ecosystem services that benefit the production system and society.

Forage Brassica Use In New Zealand And Australia Farming Systems, A. Dumbleton, H. G. Judson

IGC Proceedings (1977-2023)

Forage brassica, genus Brassica, are annual feed crops grown on farming enterprises throughout New Zealand and Australia. These crops provide a source of high-yielding, high-quality feed, which is particularly useful to complement pasture production during periods when pasture growth is reduced. There are six forage brassica species and subspecies of agricultural importance including bulb turnip, swede, kale, forage rape, leafy turnip, and raphanobrassica. All of these, as well as interspecific crosses and individual cultivars, offer a range of characteristics to fit various environmental and livestock production challenges. Consumption of forage brassica crops in ruminant animals may reduce methane emissions …

Evaluation Of Mulberry Leaf Meal Feeding On The Growth And Hematological Profile Of Cross Bred Heifers, Rohit Bishist, Irfana Quadiri, Krishan Lal Gautam, Kamal Kishore

IGC Proceedings (1977-2023)

Mulberry (Morus alba) is a multipurpose fodder tree with a high voluntary intake. Mulberry foliage is characterized by high digestibility and excellent level of protein which makes it comparable to commercial concentrates for dairy cattle. o evaluate the effect of dietary inclusion of mulberry leaf meal as a concentrate replacement (20%) in the crossbred heifers ration the present investigation was carried out at dairy farm Dr YSPUHF Nauni Solan. In the study, a total of 12 cross bred heifers (1-2 yr) were divided into two equal groups of 6 animals each, on the basis of body weight. The …

History Of Endophytic Toxicosis And Novel Variety Solutions, J. H. Bouton

IGC Proceedings (1977-2023)

Associations of Epichloe endophytes with tall fescue [Lolium arundinaceum (Schreb). Darbush.] and perennial ryegrass (Lolium perenne L.) form the basis for the known science and ecology of mutualistic, fungal endophytes, and especially their impact on livestock. In the USA, millions of acres are endophyte infected today due mainly to planting ‘Kentucky 31’ to reduce soil erosion. Health problems emerged later among animals grazing the grass. These toxicity symptoms were listed under the general term ‘Fescue Toxicosis’. Research demonstrated that ergot alkaloids produced by the mutualism were mainly responsible. Developing endophyte-free versions of major varieties reduced host grass persistence …

Comparison Of Two Low-Input Cow/Calf Production Systems On Temperate Grassland, W. B. Bryan, Mata Padrino, E. Felton, E. C. Prigge, V. W. Temu, O. J. Gekara

IGC Proceedings (1977-2023)

Two systems of grass farming were compared in an eight-year experiment in West Virginia, USA. The grassland consisted primarily of cocksfoot (Dactylis glomerara L.), Kentucky bluegrass (Poa pratensis L.), tall fescue (Festuca arundinacea Schreb.), and red (Trifolium pretense L.) and white clover (T. repens L.). The objective was to compare two systems of beef cow calf production. The experiment was a randomized complete block with two replicated treatments. The grassland of treatment 1 (system 1) was overseeded with legumes, grazing started 1 wk earlier and continued 1 wk later than treatment 2 (system 2) and …

Grazing Cover Crops In The Eastern Us: Performance Of Sheep, Goats, And Cattle Grazing Brassica Cover Crops, K. Cassida

IGC Proceedings (1977-2023)

Grazing annual forage crops has attained new interest with the increase in use of cover crops. Grazing annual forages grown as cover crops not only allows livestock producers to extend the grazing season but also gives row crop growers a way to recoup the cost of planting cover crops through grazing leases. Species in the Brassicaceae family (turnip, rape, kale, radish, and hybrids) have wide adaptability across the eastern US, excellent forage yield potential, and extremely high nutritional value. Brassicas are sometimes described as “high-moisture concentrates.” Their low effective fiber content drives the common recommendation to grow them with annual …

Extended Season Grazing On Two Ranches At Opposite Ends Of The Americas, Brett Chedzoy

IGC Proceedings (1977-2023)

Dormant season feeding of stored forages accounts for the majority of beef cattle production expenses across the world (Geiser and Boetel 2017). Additionally, most beef cattle production and particularly cow-calf operations are relegated to less accessible and productive landscapes, which reduces access to and increases costs for stored feeds. A comparison of two cow-calf operations owned and operated by the same family in the Province of Cordoba, Argentina and State of New York, USA are offered as case studies of creative solutions to these challenges. In Argentina, appropriate stocking for year-long grazing is the key to surviving the winter dormant …

The Partial Replacement Of Perennial Ryegrass Silage With Ensiled Biorefined Perennial Ryegrass Press Cake, And Its Impact On Productivity Of Late Lactation Dairy Cows, H. Costigan, B. Lahart, M. Kennedy, T. Rumley, L. Shalloo

IGC Proceedings (1977-2023)

Although necessary to maintain milk production in late lactation when grass is scarce, dependency on imported concentrate has negative environmental credentials; diversifying native feeds i.e., perennial ryegrass, using biorefinery, to produce high quality by-products may be a solution (Sanders et al., 2020). To validate these suggestions, a study was undertaken on dairy cows during the winter period; 60% of a perennial ryegrass silage diet was replaced with perennial ryegrass (PRG) press cake in treatment cows (GSPC; n=20), while a perennial ryegrass silage diet was offered to control cows (GS; n=20). Cows substituted with press cake produced 9.1 and 10.5 % …

Grazing And Animal Welfare Of Dairy Cows In Europe, What Do We Know?, A. Van Den Pol-Van Dasselaar, D. Hennessy, J. Isselstein

IGC Proceedings (1977-2023)

Grazing systems are important components of the landscape in almost all European countries. Grazing is inherently close to the nature of herbivores, but no longer applied everywhere in Europe. This paper discusses the extent of dairy cow grazing in Europe and the effect of grazing on animal welfare. The study builds on results of surveys from the European Grassland Federation (EGF) Working Group “Grazing” (WGG) in the period 2010–2022 and a focus group meeting in 2022. Data on the extent of grazing of dairy cows in Europe are provided. Europe can be divided into six distinctive regions with respect to …

Isoflavones In Legumes As Functional Forages And Feeds In Ruminant Grazing Systems, B. E. Davis, Michael D. Flythe, T. A. Hamilton, D. G. Ely, L. H. Anderson, J. R. Weinert-Nelson

IGC Proceedings (1977-2023)

Legumes are often utilized in livestock grazing systems to improve diet quality, diversity, and consequently animal performance. In addition to their nutritional utility, legumes contain phytoestrogenic isoflavones that have selective antimicrobial activity in the rumen and once absorbed can cause arterial vasodilation. These added bioactive functions of isoflavones suggest that legumes could be strategically utilized in grazing systems as functional forages to improve ruminant performance and health. The objective of this presentation will be to discuss past and current research on the application of isoflavones via legumes as an antimicrobial for growth promotion and as a mitigation strategy for fescue …

Cool-Season Annual Legumes And Forbs For Grazing And Cover Crop Systems, S. L. Dillard

IGC Proceedings (1977-2023)

Annual forage legumes and non-leguminous forbs can be used to interseed into perennial forage grasses or as a short-term grazing option between row crop rotations. Diversification of cropping systems by increasing number or type of cover crops in crop rotation plays an important role in improving land-use efficiency and in promoting sustainable agriculture. Legumes and other broadleaf forages provide increased forage digestibility and crude protein as a result of their greater leaf-to-stem ratio. In the Southeast U.S, few novel cultivars have been released in the last 20 years, resulting in the reliance on only a few forage cultivars and species. …

Animal And Forage Performance Of Integrated Crop-Livestock Systems, S. L. Dillard

IGC Proceedings (1977-2023)

Grazing of cool-season cover crops has been shown to be a viable tool for extending the grazing season while mitigating environmental risks associated with row-crop farming systems. Grazing cover crops is not novel, but most recent information available on this practice focuses on soil health as opposed to forage production and animal performance. Research has shown that forage quality of cool-season annual cover crops is sufficient to maintain an average daily gain of at least 1 kg/d and as high as 1.5 kg/d. Forage species selection plays an important role in the success of an integrated crop-livestock system. Grasses typically …

Preliminary Results: Complementary C4:C3 Grazing Systems, M. Berry, P. Keyser, S. Jagadamma, H. Nauman, K. Coffey, C. Nieman, P. Owens, A. Ashworth, E. Bisangwa

IGC Proceedings (1977-2023)

Native warm-season grasses (NWSG) can produce high quality forage and high rates of gain for beef cattle. However, little data is available on how NWSG affect the productivity of cow-calf operations on a farm scale. Therefore, we implemented an experiment at three sites, Booneville, AR, Linneus, MO and Louisville, TN, with cow-calf pairs (mature cows over ≥ 3 years old, spring calving). We evaluated two forage systems that mix either a drought or drought/flood tolerant native C₄ species [big bluestem (BB) blend or eastern gamagrass (EG)] with a cool-season perennial, tall fescue (TF), and compared them to the most …

Fodder Scenario And Hortipastoral Opportunities To Enhance Fodder Production In India, Nagaratna Biradar, C. Lakshmi Devi, Vinod Kumar, Narendra S. Kulkarni, G. K. Kumar Anil, S. S. Guledagudda, A. Bheemappa

IGC Proceedings (1977-2023)

Food grain production and livestock production are closely related in India as crop-residue forms the major source of fodder for livestock. It’s thus assumed that increase in food grain production has positive effect on availability of dry matter to the livestock. Using land use classification, crop production (2015 to 2020) and livestock census (2019) data, dry matter (DM) availability for livestock for 28 states of India was estimated. Hortipastoral opportunities by estimating area available under orchards in southern India were done to assess the possibility of introducing fodder crops in orchards. Some of the fodder crops were introduced in orchards …

Productivity And Variability Of Pastures And Cover Crops In Lowland Rice-Pasture Rotations In Uruguay, Walter Ayala, J. Terra

IGC Proceedings (1977-2023)

No abstract provided.

Prebiotic Proanthocyanidins Inhibit Bile Reflux–Induced Esophageal Adenocarcinoma Through Reshaping The Gut Microbiome And Esophageal Metabolome, Katherine M. Weh, Connor L. Howard, Yun Zhang, Bridget A. Tripp, Jennifer Clarke, Amy B. Howell, Joel H. Rubenstein, Julian A. Abrams, Maria Westerhoff, Laura A. Kresty

Department of Statistics: Faculty Publications

The gut and local esophageal microbiome progressively shift from healthy commensal bacteria to inflammation-linked pathogenic bacteria in patients with gastroesophageal reflux disease, Barrett’s esophagus, and esophageal adenocarcinoma (EAC). However, mechanisms by which microbial communities and metabolites contribute to reflux-driven EAC remain incompletely understood and challenging to target. Herein, we utilized a rat reflux-induced EAC model to investigate targeting the gut microbiome–esophageal metabolome axis with cranberry proanthocyanidins (C-PAC) to inhibit EAC progression. Sprague-Dawley rats, with or without reflux induction, received water or C-PAC ad libitum (700 μg/rat/day) for 25 or 40 weeks. C-PAC exerted prebiotic activity abrogating reflux-induced dysbiosis and mitigating …

Determining The Surface PKA Of Perfluorooctanoic Acid, Lila J. Musegades, Owen P. Curtin, Jenée D. Cyran

Chemistry and Biochemistry Faculty Publications and Presentations

Perfluorooctanoic acid (PFOA) is an environmentally prevalent and persistent organic pollutant with toxic and bioaccumulative properties. Despite the known importance of perfluorinated pollutants in the global environment, molecular-level details of the physicochemical behavior of PFOA on aqueous interfaces remain poorly understood. Here, we utilized two surface-specific techniques, vibrational sum frequency generation spectroscopy (SFG) and surface tensiometry, to investigate the pH-induced structural changes of PFOA and octanoic acid (OA) and determined the apparent pK_a at the air–water surface. The SFG spectra and surface activity model were investigated over a wide range of pHs. With the surface tension measurements, the …

Transfer Learning In The Era Of Foundational Models: Application To Diagnosis In Rheumatology, Prashant Shekhar

Math Department Colloquium Series

Problems with current synovitis grading procedures

• There has been a lack of reliability in grading these images in the medical community due to a lack of universally accepted diagnostic criteria [Momtazmanesh et al., 2022]
• The human/machine variability creates an additional challenge in an efficient automated scoring system [Ranganath et al., 2022]
• There is a lack of consistency between doctors in grading these images [Momtazmanesh et al., 2022]

Emergent Ai, Jillian A. Bick

CAFE Symposium 2024

For many years, artificial intelligence (AI) was considered to be limited in its abilities due to being confined to a pre-defined set of data. Currently, however, AI models have grown in complexity and size, leading to some previously impossible behaviors. These behaviors, known as "emergent AI behaviors," are unpredictable and not pre-programmed. Their existence suggests that AI is expanding in adaptability and may one day rival human intelligence. Media often portrays AI as having emotions and having the ability to operate autonomously, but what behaviors are AI really capable of?

Motion Magnification-Inspired Feature Manipulation For Deepfake Detection, Aydamir Mirzayev, Hamdi Di̇bekli̇oğlu

Turkish Journal of Electrical Engineering and Computer Sciences

Recent advances in deep learning, increased availability of large-scale datasets, and improvement of accelerated graphics processing units facilitated creation of an unprecedented amount of synthetically generated media content with impressive visual quality. Although such technology is used predominantly for entertainment, there is widespread practice of using deepfake technology for malevolent ends. This potential for malicious use necessitates the creation of detection methods capable of reliably distinguishing manipulated video content. In this work we aim to create a learning-based detection method for synthetically generated videos. To this end, we attempt to detect spatiotemporal inconsistencies by leveraging a learning-based magnification-inspired feature manipulation …

A Comparative Study Of Responses To Retina Questions From Either Experts, Expert-Edited Large Language Models, Or Expert-Edited Large Language Models Alone, Prashant D. Tailor, Lauren A. Dalvin, John J. Chen, Raymond Iezzi, Timothy W. Olsen, Brittni A. Scruggs, Andrew J. Barkmeier, Sophie J. Bakri, Edwin H. Ryan, Peter H. Tang, D. Wilkin Parke, Peter Belin, Jayanth Sridhar, David Xu, Ajay E. Kuriyan, Yoshihiro Yonekawa, Matthew R. Starr

Wills Eye Hospital Papers

OBJECTIVE: To assess the quality, empathy, and safety of expert edited large language model (LLM), human expert created, and LLM responses to common retina patient questions.

DESIGN: Randomized, masked multicenter study.

PARTICIPANTS: Twenty-one common retina patient questions were randomly assigned among 13 retina specialists.

METHODS: Each expert created a response (Expert) and then edited a LLM (ChatGPT-4)-generated response to that question (Expert + artificial intelligence [AI]), timing themselves for both tasks. Five LLMs (ChatGPT-3.5, ChatGPT-4, Claude 2, Bing, and Bard) also generated responses to each question. The original question along with anonymized and randomized Expert + AI, Expert, and LLM …

Computational Study Of Binding Of Oseltamivir To Neuraminidase Mutants Of Influenza A Virus, Muhammad Arba, Sri Wahyuli, Setyanto Tri Wahyudi, Amir Karton, Chun Wu

College of Science & Mathematics Departmental Research

Oseltamivir (OTV), which targets the neuraminidase (NA) of Influenza A virus (IAV), has been reported to develop resistance. Here, we performed a computational study on the binding modes of OTV in the wild-type and popular mutants of IAV NA (E119A, E119D, E119G, H274Y, I117T, I117V, I117V-E119A, K150N, N294S, R292K, V116A, and Y252H). The Arg118, Glu119, Asp151, Arg152, Glu276, Arg292, and Arg371 were identified as crucial interacting residues with the drug. The energy decomposition analysis showed that with few exceptions, the dispersion interaction is the dominant interaction, followed by the charge-transfer and polarization interactions. The affinities for OTV were greatly reduced …

Emoji Use In Social Media Posts: Relationships With Personality Traits And Word Usage, Shelia Kennison, Kameryn Fritz, Maria Andrea Hurtado Morales, Eric Chan-Tin

Computer Science: Faculty Publications and Other Works

Prior research has demonstrated relationships between personality traits of social media users and the language used in their posts. Few studies have examined whether there are relationships between personality traits of users and how they use emojis in their social media posts. Emojis are digital pictographs used to express ideas and emotions. There are thousands of emojis, which depict faces with expressions, objects, animals, and activities. We conducted a study with two samples (n = 76 and n = 245) in which we examined how emoji use on X (formerly Twitter) related to users’ personality traits and language use …

Fiber-Based Speckle Contrast Optical Tomography In Humans, Chen-Hao Lin

Arts & Sciences Graduate Student Theses and Dissertations

Cerebral blood flow (CBF) is an important biomarker for indicating many brain diseases, such as stroke and traumatic brain injury. Therefore, the development of real-time CBF measures in the clinic is desired, and many techniques have been developed to measure CBF. However, the current standard techniques, including positron emission tomography (PET), arterial spin labeling magnetic resonance imaging (ASL-MRI), and computed tomography (CT) perfusion are limited to the high instrument cost, massive size, and the requirement of ionizing radiation, and thus are not able to map CBF at the bedside. Furthermore, these techniques offer only snapshots due to scanner logistics. An …

Using Natural Language Processing And Patient Journey Clustering For Temporal Phenotyping Of Antimicrobial Therapies For Cat Bite Abscesses, Brian Hur, Karin M. Verspoor, Timothy Baldwin, Laura Y. Hardefeldt, Caitlin Pfeiffer, Caroline Mansfield, Riati Scarborough, James R. Gilkerson

Natural Language Processing Faculty Publications

Background: Temporal phenotyping of patient journeys, which capture the common sequence patterns of interventions in the treatment of a specific condition, is useful to support understanding of antimicrobial usage in veterinary patients. Identifying and describing these phenotypes can inform antimicrobial stewardship programs designed to fight antimicrobial resistance, a major health crisis affecting both humans and animals, in which veterinarians have an important role to play. Objective: This research proposes a framework for extracting temporal phenotypes of patient journeys from clinical practice data through the application of natural language processing (NLP) and unsupervised machine learning (ML) techniques, using cat bite abscesses …

Long Term Sustainable Use Of Demersal Gillnet And Demersal Longline In Western Australia’S Temperate Shark Fisheries - Fisheries Research Report 340, Matias Braccini, Jack Parker, Daniela Waltrick, Maddison Watt, Nick Blay, Clinton Syers

Fisheries Research Reports

The Temperate Demersal Gillnet and Demersal Longline Fisheries (TDGDLF) are one of the main commercial shark fisheries in Australia. Most fishers in the TDGDLF use demersal gillnets to target sharks with scalefish taken in smaller amounts. Demersal longlines are also permitted but are not widely used. Demersal gillnets are size selective, but they do not necessarily discriminate among species, catching target and non-target species.

The Western Australian Fishing Industry Council (WAFIC) received funding as part of the Australian Government’s Our Marine Parks Grants Program to undertake research on the TDGDLF. This project was administered under the direction of a steering …

Fisheries Research Report No. 339: Assessment Of The Status Of The South Coast Demersal Scalefish Resource, Jeffrey V. Norriss, Sybrand A. Hesp, David V. Fairclough, Rubie Evans-Powell, B. Hancock, Emily A. Fisher, Tim Leary, Nick Jarvis

Fisheries Research Reports

This document provides the 2023 risk-based weight of evidence stock assessments for snapper, Bight redfish, hapuku, blue morwong, and Western blue groper for 2023 in the South Coast Bioregion (SCB).

Experimental Sars-Cov-2 Infection Of Elk And Mule Deer, Stephanie M. Porter, Airn E. Hartwig, Helle Bielefeldt-Ohmann, Jeffrey M. Marano, J. Jeffrey Root, Angela M. Bosco-Lauth

United States Department of Agriculture Wildlife Services: Staff Publications

To assess the susceptibility of elk (Cervus canadensis) and mule deer (Odocoileus hemionus) to SARS-CoV-2, we performed experimental infections in both species. Elk did not shed infectious virus but mounted low-level serologic responses. Mule deer shed and transmitted virus and mounted pronounced serologic responses and thus could play a role in SARS-CoV-2 epidemiology.

The Early Late Miocene Cessation Of Deep And Intermediate Water Circulation Through The Central American Seaway, Benjamin Stanley Kwiatkowski

Dissertations, Theses, and Capstone Projects

The state of the middle late Miocene global ocean circulations which regulated climate and affected deep ocean chemical environments were impacted by geographic changes. During the Miocene, cirum-equatorial circulations slowly decreased, which included through the seaway between the Americas called the Central American Seaway (CAS). Its shoaling and ultimate closing led to the onset of modern day oceanic circulation as characterized by the global thermohaline circulation. However, this seaway has a long hotly debated history concerning the timing of its restriction and shallowing owing in part to the shifting of tectonic plates.

The goal of this research focuses on investigating …