Digital Commons Network^™

Impacts Of El Niño On The Florida Reef: A Case Study Of The 2016 El Niño Event, Evvie Yendra

Department of Environmental Studies: Undergraduate Student Theses

Coral reefs are vital ecosystems to coastal communities and the world’s oceans. They support other organisms, protect shorelines, and benefit coastal economies through fishing and recreation. Today, coral reefs face many threats, including ocean acidification, bleaching due to increased ocean temperatures, and disease. These threats are typically heightened during El Niño events across the globe. With a focus on the Florida Reef, these data encompass three key regions (Southeastern Florida, The Florida Keys, and Dry Tortugas) over the years 2014, 2016 (an El Niño event), and 2018. As 2024 is interpreted to be an El Niño year, this study predicts …

Toward Intuitive 3d Interactions In Virtual Reality: A Deep Learning- Based Dual-Hand Gesture Recognition Approach, Trudi Di Qi, Franceli L. Cibrian, Meghna Raswan, Tyler Kay, Hector M. Camarillo-Abad, Yuxin Wen

Engineering Faculty Articles and Research

Dual-hand gesture recognition is crucial for intuitive 3D interactions in virtual reality (VR), allowing the user to interact with virtual objects naturally through gestures using both handheld controllers. While deep learning and sensor-based technology have proven effective in recognizing single-hand gestures for 3D interactions, research on dual-hand gesture recognition for VR interactions is still underexplored. In this work, we introduce CWT-CNN-TCN, a novel deep learning model that combines a 2D Convolution Neural Network (CNN) with Continuous Wavelet Transformation (CWT) and a Temporal Convolution Network (TCN). This model can simultaneously extract features from the time-frequency domain and capture long-term dependencies using …

Thermal Physiology Of Sceloporus Olivaceus And Sceloporus Variabilis In South Texas, Ian Rockel

Masters Theses (Archived)

This study explores the thermal physiology of two sympatric lizard species, Sceloporus olivaceus (Texas spiny lizard) and Sceloporus variabilis (rose-bellied lizard), in South Texas. I document the metabolic rate and its temperature sensitivity, thermal limits, and performance at different temperatures to better understand the impact of rising temperatures and urbanization on these ectotherms, whose body temperature and, consequently, metabolic rate, activity level, and reproductive success depend on their thermal environment. We hypothesize that S. olivaceus will exhibit greater thermal resilience owing to its broader latitudinal range, variable habitat usage within Texas, and presumed more versatile thermoregulatory strategies. Scelorporus olivaceus's higher …

Burning Calories, Burning Ocean: Metabolic Rate In Bivalves As A Predictor Of Extinction Selectivity Through Time And During Rapid Global Warming, Siddharth Gavirneni

Theses - ALL

Organismal metabolic rate is linked to environmental temperature and oxygen consumption, and as such, may be a useful predictor of extinction risk during major climate- driven crises. However, metabolic attributes can be quantified in many ways, highlighting differing aspects of organisms’ ecology. Here, we estimate resting whole-body and mass-specific metabolic rates in post-Carboniferous bivalve taxa using body size and seawater paleotemperature to assess how metabolic rate determines survival both during and outside of intervals of rapid climate warming, or ‘hyperthermals’. Accounting for the effects of geographic range size, we find a pattern of preferential extinction of bivalves with lower total …

Stochastic Algorithms For Simulating Protein Assembly In Biological Cells, Advait Shukla

Theses - ALL

Understanding membrane protein assembly using computational methods is critical in developing drug delivery strategies for tight junction diseases such as Alzheimer’s and Crohn’s diseases. While experimental methods, such as freeze-fracture micrographs, provide microscopic details of the protein strand networks, they cannot offer molecular-level information, which is necessary for drug design. This work attempts to close the gap by computationally predicting strand networks of the claudin family of proteins that form tight junctions across neighboring cells in epithelial and endothelial tissues. Using claudin dimer data collected by the Protein AssociatioN Energy Landscape (PANEL) method coupled with some Markovian approximations, we built …

A Molecular Toolbox To Study Dopamine And Serotonin Receptors For The Development Of Improved Therapeutics, Emma Joanna Doukmak

Dissertations - ALL

Dopaminergic and serotonergic signaling pathways are involved in numerous biological processes including behavior, mood regulation, and cognition. Dysfunction in these pathways can lead to neurological and mental health disorders, which are often treated with drugs targeting the dopamine and serotonin receptors. However, many of these drugs, along with those targeting other G protein couple receptors (GPCRs), suffer a lack of target specificity, leading to nonspecific binding and therefore side effects. In recent years, new advances in chemical biological techniques, including affinity-based protein profiling (ABPP) and optogenetics, have further elucidated the structure and function of GPCRs, which can in turn aid …

Development And Application Of Small-Molecule Probes Targeting Ghrelin O-Acyltransferase, Jacob Moose

Dissertations - ALL

Ghrelin is a 28-amino acid peptide hormone that has wide-ranging physiological effects, including on metabolism, adipogenesis, insulin regulation, and addiction. Ghrelin offers an intriguing option for treatment of pathophysiologies related to these effects, as it requires a unique post-translational octanoyl modification to bind and activate its cognate receptor, growth hormone secretagogue 1a (GHSR). The enzyme responsible for this modification, ghrelin O-acyltransferase (GOAT) therefore offers the ability to modulate ghrelin signaling through inhibition of the maturation pathway. Due to a lack of structural or mechanistic information about GOAT, pharmaceutical development of molecules capable of GOAT inhibition has been desired, but few …

Defects And Deformation In Passive And Active Structural Glasses, Julia Ann Giannini

Dissertations - ALL

Glasses and disordered granular media represent a class of materials that are quite familiar to us, from the glass in windows and phone screens, to piles of fruits, grains, and sand. Further, living and active systems such as cellular tissues, collections of robots, and even human crowds behave as disordered solids when they are gathered at high enough densities. Despite their ubiquity, there are still many behaviors of these amorphous systems that lack a full understanding. Contrasting crystalline solids, the thermodynamic, vibrational, energetic, and mechanical properties of glasses are not well-characterized by solid state theory. In the case of active …

Entanglement With Neutral Atoms In The Simulation Of Nonequilibrium Dynamics Of One-Dimensional Spin Models, Anupam Mitra

Physics & Astronomy ETDs

Quantum entanglement is a key ingredient for quantum information processing with capabilities beyond that of classical computation. We study the generation and role of entanglement in the dynamics of spin-1/2 models, both for the design of quantum gates for general-purpose quantum computation and for quantum simulation of interacting spin models. We introduce the neutral atom Mølmer-Sørensen gate, involving rapid adiabatic Rydberg dressing interleaved in a spin-echo sequence. We show its robustness to quasi-static experimental imperfections and favorable scaling with the time-energy scales of Rydberg-mediated entanglement generation. In quantum simulation, we consider critical behavior in quench dynamics of transverse field Ising …

And Food Justice For All: Advancing Access To Just And Sustainable Food Systems, Makenna Grace Landry

Graduate Student Portfolios, Professional Papers, and Capstone Projects

A collection of work exploring food justice and food access programming in Western Montana, as well as a critique of the Bayer-Monsanto merger.

Timber And Tornadoes: A Journalistic View Of Mississippi's Escalating Climate Challenge, Alice Ann Hollingsworth, Alice Ann Hollingsworth

Honors Theses

Timber and Tornadoes: A Journalistic View of Mississippi’s Escalating Climate Challenges is a project which explores the impact of climate change on the state of Mississippi and its industries. Specific areas of interest were the recent onslaught of wind disasters including tornadic activity and hurricanes as well as the impact of weather events on the timber and forestry industries in the state. This project involved interviews of industry professionals as well as academic experts. In addition, interview questions and necessary supplemental context were developed using significant background research. Emphasizing the potential challenges that climate change will present for the state …

Anthropaean Storytelling, Community, And The Ripples Of The Climate Crisis, Jonathan Summers

Undergraduate University Honors Capstones

The climate crisis has grown into a dangerous global threat, pushing our planet to the point of ecological no return. We face the certainty of increasingly destructive climate disasters and social upheaval, threatening our societal and biological survival. The next few years will prove critical to the future welfare of our species and our planet. However, we are not without our defenses. Through the lens of fictional short stories, this capstone concentrates on community and storytelling, two deeply human behaviors that could be two of our greatest tools in the struggle against climate change. Human beings are social creatures at …

Companionship, Romance, And Self-Perception With Conversational Chatbots, Jonathan Windsor

Departmental Honors & Graduate Capstone Projects

Serving as a metaphorical gateway transcending the communicative barriers of physical relationships in interpersonal dialogues, artificial imators of human behavior and speech, also known as conversational chatbots; a simulation of human knowledge and existence in a bi-directional conversation, functions as a rhetor of expression. Spanning from contexts of professional to romantic, I serve to dissect and critically analyze the nuances of human-machine relationships based on pre-established literature, inviting ethical considerations and biases in their design and marketing. Corporate influences spark pre-established servitude-esque relationships with conversational agents. Professional applications, both task-oriented and emotionally based alike, paint a mixed picture of …

Chemical Extraction Of Non-Exchangeable Radiocesium From Fukushima Soils Using Ion-Exchange And Selective Precipitation, Ian Danquah

Master's Theses

The Fukushima Daiichi Nuclear Power Plant meltdown in Japan resulted in the release of radionuclides into the environment. Soil in neighboring prefectures has been reported to be among the most contaminated. Since the event in 2011, a large volume of soil has been collected and stored in temporary storage facilities, awaiting decontamination. Numerous methods have been used and employed to remediate these soils, but most methods do not achieve the 90% removal target set by the Japanese government for safe disposal. Among all reported methods, the ion-exchange technique has been reported to be cost-efficient and effective. A study by Tamura …

Audience Preferences For Extension Forestry Zoom Webinars, Kevin W. Zobrist, Brendan J. Whyte

Journal of Extension

The Washington State University Extension Forestry program switched to all online programming in 2020 in response to the COVID-19 pandemic. Over 2,000 people participated in our webinars, providing an opportunity to survey a large audience about their webinar preferences. We found that people prefer webinars that are approximately an hour long and offered in the evening or late morning. Participants placed high importance on having a recording available, but they had mixed views on including video of the instructor speaking. Participants found online delivery to be successful and had a strong preference for online programming in the future.

Removal Of Phenol From Oilfield Produced Water Using Non-Conventional Adsorbent Medium By An Eco-Friendly Approach, Salem Jawad Alhamd, Mohammed Nsaif Abbas, Hassan Jameel Jawad Al-Fatlawy, Thekra Atta Ibrahim, Zaid Nsaif Abbas

Karbala International Journal of Modern Science

Petroleum extraction generates substantial quantities of produced water, a challenge compounded by water scarcity in oil-producing regions, notably the Middle East. Leveraging produced water effectively, adhering to environmental standards, can offer a viable solution to the issue of water scarcity. This study explores the potential of mandarin peels as an available, cost-effective adsorbent for treating synthetic aqueous solution simulated to oil-field produced water, specifically targeting phenol, a dangerous pollutant. Employing a batch-mode adsorption unit, six operational factors—phenol concentration, acidity, agitation speed, contact time, adsorbent dose, and temperature—were investigated. Results revealed an inverse relationship between phenol removal and pH, concentration, and …

Mitochondria Regulate Proliferation In Adult Cardiac Myocytes, Gregory B Waypa, Kimberly A Smith, Paul T Mungai, Vincent J Dudley, Kathryn A Helmin, Benjamin D Singer, Clara Bien Peek, Joseph Bass, Lauren Nelson, Sanjiv J Shah, Gaston Ofman, J Andrew Wasserstrom, William A Muller, Alexander V Misharin, G R Scott Budinger, Hiam Abdala-Valencia, Navdeep S Chandel, Danijela Dokic, Elizabeth Bartom, Shuang Zhang, Yuki Tatekoshi, Amir Mahmoodzadeh, Hossein Ardehali, Edward B Thorp, Paul T Schumacker

Faculty, Staff and Student Publications

Newborn mammalian cardiomyocytes quickly transition from a fetal to an adult phenotype that utilizes mitochondrial oxidative phosphorylation but loses mitotic capacity. We tested whether forced reversal of adult cardiomyocytes back to a fetal glycolytic phenotype would restore proliferative capacity. We deleted Uqcrfs1 (mitochondrial Rieske iron-sulfur protein, RISP) in hearts of adult mice. As RISP protein decreased, heart mitochondrial function declined, and glucose utilization increased. Simultaneously, the hearts underwent hyperplastic remodeling during which cardiomyocyte number doubled without cellular hypertrophy. Cellular energy supply was preserved, AMPK activation was absent, and mTOR activation was evident. In ischemic hearts with RISP deletion, new cardiomyocytes …

Revitalizing Turtle Creek Park, Michael Hardyway, Ethan Harm, Abbey Jacoby, Casey Stephenson

Final Reports in ENST 411: Environmental Community Projects

We current ENST 411 students, Abbey Jacoby, Michael Hardyway, Ethan Harm, and Casey Stephenson have chosen to work with Jim Knight, East Buffalo Township, the Merrill Linn Land and Waterways Conservancy, and many others in an attempt to revitalize Turtle Creek Park for a plethora of reasons. Three of us are majoring in biology, and two are majoring in environmental science, which makes much of the information and techniques relevant in Turtle Creek applicable to our courses of study. This project included heavy hands on work which allowed us students to leave a memorable and impactful influence on the Lewisburg …

Controls On Soft Tissue And Cellular Preservation In Late Eocene And Oligocene Vertebrate Fossils From The White River And Arikaree Groups Of Nebraska, South Dakota, And Wyoming, John E. Gallucci, Grace Woolslayer, Kelsey Barker, Brian Kibelstis, Allison R Tumarkin-Deratzian, Paul V. Ullmann, David E. Grandstaff, Dennis O. Terry

School of Earth & Environment Departmental Research

Previous studies on microtaphonomy have identified multiple types of organic microstructures in fossil vertebrates from a variety of time periods and past environmental settings. This study investigates potential taphonomic, paleoenvironmental, and paleoclimatic controls on soft tissue and cellular preservation in fossil bone. To this end, fifteen vertebrate fossils were studied: eight fossils collected from the Oligocene Sharps Formation of the Arikaree Group in Badlands National Park, South Dakota, and seven fossils from formations in the underlying White River Group, including the Oligocene Brule Formation of Badlands National Park, and the Eocene Chadron Formation of Flagstaff Rim, Wyoming; Toadstool Geologic Park, …

A Just, Sustainable Transition At Fordham University, Ethan Shepard

Student Theses 2015-Present

This paper takes a deeper look at Fordham University’s environmental impact and concludes with a strategy outline that works towards a just, sustainable future on the university campus and surrounding areas. New York City is an area already facing the adverse effects of climate change, and there are several threats that have the potential to cause grave consequences moving forward. Prior to constructing a climate action plan, it is integral to understand the past and present status of The Bronx under a socio-environmental lens. Chapter One focuses on the current status of Fordham’s Rose Hill Campus from a sustainability perspective …

Heavy Steers And Heifers Run At Low Stocking Rates Enhance Drought Resilience In A Pastoral Region Of Australia, Christophe D'Abbadie, Ross Kingwell, Philip E. Vercoe, Bradley Plunkett, Alan Peggs

Animal production and livestock research articles

CONTEXT

The semi-arid mulga lands of the Southern Rangelands of Western Australia experience frequent droughts. Maintaining a profitable animal grazing enterprise whilst preserving rangeland condition requires selecting an appropriate stocking rate and herd structure.

OBJECTIVE

We construct and apply bioeconomic models of beef enterprises for the semi-arid Southern Rangelands of Western Australia, to assess the profitability and relative riskiness of three different livestock production systems and three different stocking rates when exposed to different frequencies of drought.

METHODS

We construct bio-economic models of herd structures that separately focus on producing either: (i) 200 kg heifers and 210 kg steers (ii) …

Feasibility Of Deploying Home-Based Digital Technology, Environmental Sensors, And Web-Based Surveys For Assessing Behavioral Symptoms And Identifying Their Precipitants In Older Adults: Longitudinal, Observational Study., Wan-Tai M. Au-Yeung, Yan Liu, Remonda Hanna, Sarah Gothard, Nathaniel Rodrigues, Cierra Leon Guerrero, Zachary Beattie, Jeffrey Kaye

Mathematics and Statistics Faculty Publications and Presentations

Apathy, depression, and anxiety are prevalent neuropsychiatric symptoms experienced by older adults. Early detection, prevention, and intervention may improve outcomes.

Simulating Cross-Scale Solid-Fluid Interaction Phenomena, Jinyuan Liu

Dartmouth College Ph.D Dissertations

Solid-fluid interactions are ubiquitous in nature, and accurate simulation methods are essential for realistic animation, industrial design, and engineering analysis. Com- pared to large-scale coupling phenomena, simulating fine-scale interactions poses extra challenges due to factors such as surface tension, material wettability, and geometric complexity. In this thesis, we pursue novel methodologies to accurately model in- terfacial dynamics between surface-tension fluids and codimensional solids, involving capillary interactions, controllable wettability, and robust contact behaviors. Our ini- tial approach involves developing a novel three-way coupling method, which utilizes a thin liquid membrane, modelled as a simplicial mesh, to facilitate accurate momen- tum transfer, …

Reactivity Of Adsorbed Trace Metals At Metal (Oxyhydr)Oxide Surfaces As Probed With Isotope Exchange, Greg Ledingham

Arts & Sciences Graduate Student Theses and Dissertations

Metal (oxyhydr)oxide surfaces regulate the accessibility of trace metals in soils and aquatic systems. Up to half of the trace metals in urban environments, river systems, and contaminated soils are associated with mineral surfaces yet this pool often remains bioaccessible. Past studies of adsorption-desorption suggest that macroscopic rates of adsorption at mineral surfaces are likely mass transfer-limited and show biphasic rates, with a fast-adsorbing fraction equilibrating in seconds to minutes and a slower-adsorbing pool binding over a timescale of hours to days. In addition, adsorption-desorption hysteresis has been observed for some metals after aging at metal (oxyhydr)oxide surfaces, indicating that …

Bibliometric Review Of The Landscape And Thematic Structure Of Research On Sustainable Mining In Asean, 1942–2022, Nathatai Janjirawatna, Sirisuhk Rakthin, Philip Hallinger

Journal of Sustainable Mining

This bibliometric review addressed the lack of consolidated information on the current state of sustainable mining in the ASEAN region. The review analyzed bibliographic data associated with 539 Scopus-indexed documents on sustainable mining in ASEAN nations published through the end of 2022. Descriptive statistics identified a great disparity in the scope of research on sustainable mining practices across the ASEAN countries. Surprisingly, a significant portion of the extant research on sustainable mining in the region has been authored by scholars from outside of ASEAN. Keyword analyses highlighted several emerging research topics including life cycle assessment, conservation of natural resources, climate …

Optical Tweezers Explorations: Dna-Mitoxantrone Interactions At 20pn, Heléna Kathryn Beeloo

Honors Program Theses and Projects

Mitoxantrone is a chemotherapy drug that treats a variety of cancers by inhibiting cancer cell replication through intercalation with DNA. Intercalation is the process by which certain small molecules slide flat planar regions in their structure between the base pairs of DNA. This increases the stacking force in the DNA double helix, preventing DNA replication by increasing the force required to separate the two strands that compose the helix. In this study, dual-beam optical tweezers were used to determine the binding kinetics and dissociation constant of Mitoxantrone to single molecules of DNA at 20 pN of force. This study utilized …

Using Multi-Scale Spatial Models Of Dendritic Ecosystems To Infer Abundance Of A Stream Salmonid, Xinyi Lu, Yoichiro Kanno, George P. Valentine, Jacob M. Rash, Mevin B. Hooten

Mathematics and Statistics Faculty Publications

1. Understanding patterns of species abundance is essential for planning landscape-level conservation. The complex hierarchies of dendritic ecosystems result in different levels of heterogeneity at distinct geographic scales. Species responses to dynamic environmental drivers may also vary spatially depending on their interactions with landscape features. Monitoring abundance by explicitly quantifying their spatial and temporal variation is important for strategic management.

2. We analysed brook trout (Salvelinus fontinalis) count data collected from 173 sites in western North Carolina between 1989 and 2015. We developed a Bayesian hierarchical model that used single- and multi-pass electro-fishing data and characterized their respective …

Living Emission Abolish Filters (Leafs) For Methane Mitigation: Design And Operation, Richard Hamilton, Nicholas Griffith, Peter Salamon, Robert Handler, Marina G. Kalyuzhnaya

Michigan Tech Publications

As one of the most potent greenhouse gases, methane is a critical target for the near-term mitigation of global warming. Efficient, scalable, easy-to-implement, and robust mitigation technologies are urgently needed to assist in reaching methane abolishment. The goal of this research was to test the applicability of active, extremophilic methanotrophic cells as a baseline concept for engineered systems aiming at methane capturing. The system, named living emission abolish filters (LEAFs), represents an array of immobilized biomaterials capable of capturing methane directly from vent streams. The biomaterials were made using cells of Methylotuvimicrobium alcaliphilum 20ZR, a robust halophilic methanotrophic bacterium with …

Modeling The Effects Of Retinal Thinning And Oxidative Stress During Space Travel, Dillon Weatherston, Dylan Nelson, Justin Jones, Elizabeth Vargis

Utah Space Grant Consortium

Spaceflight causes both physical and chemical changes within the subretinal tissue, particularly the retinal pigment epithelium (RPE) and Bruch’s membrane. Changes such as layer thinning and increases in oxidative stress are both implicated in vision loss caused by spaceflight. While these changes can lead to cell death, the mechanistic impact that these changes have on retinal function are unknown. To isolate the physical alterations to the subretinal tissue caused by space travel, we utilized a tunable in vitro model of Bruch’s membrane and primary porcine RPE cells. Initial results showed that while thinner models can be constructed, they are difficult …

Optimization Of Animal Hair Preparation For Scanning Electron Microscopy (Sem), Cristina De La Vieja Medina, Samuel Tobler, Wendy Schatzberg

Utah Space Grant Consortium

This study investigates the best method to prepare animal hair samples for scanning electron microscopy (SEM). The main objective is to identify the most effective method to clean, cut, and position the hair to achieve a better image of the hair without external elements. Various cleaning methods were explored, but the best option was a 15-minute sonication in water followed by a 24-hour immersion in a 90% ethanol-10% methanol mixture. Samples were placed with different types of glue to ensure the hair remained stable. A diamond blade was used to cut the hairs but did not provide the desired results …