Digital Commons Network^™

Selective Nutrient Incorporation May Underestimate Heterotrophy Of A Mixotrophic Reef-Building Coral, Connor R. Love, Marleen Stuhr, Michael D. Fox, Veronica Z. Radice, Maoz Fine, Kelton W. Mcmahon, David L. Valentine

Biological Sciences Faculty Publications

Mixotrophic reef-building corals acquire nutrition via photosynthate translocation from endosymbiotic microalgae and by heterotrophic prey/particle capture. Heterotrophy promotes resistance to, and recovery from, environmental stress, but quantifying coral heterotrophy remains difficult due to complex resource exchanges within the coral holobiont. We interrogated the response of multiple biomarkers to coral heterotrophy using fatty acid profiling and stable isotope analysis of Stylophora pistillata grown along a controlled feeding gradient from pure autotrophy to pure heterotrophy. We found that fatty acids and nitrogen were effectively incorporated into both coral host and symbiont tissues, while carbon, which is the primary target for conventional heterotrophy …

Biotime 2.0: Expanding And Improving A Database Of Biodiversity Time Series, Maria Dornelas, Laura H. Antão, Amanda E. Bates, Viviana Brambilla, Jonathan M. Chase, Cher F. Y. Chow, Ada Fontrodona-Eslava, Anne E. Magurran, Inês S. Martins, Faye Moyes, Alban Sagouis, Samuel Adu-Acheampong, Daniel Acquah-Lamptey, Dušan Adam, Penelope A. Ajani, Aitor Albaina, Pablo Almaraz, Jeongseop An, Roger Sigismund Anderson, Madelaine Jean Robertson Anderson, Alexsander Z. Antunes, Ivan Arismendi, Linda Armbrecht, Pedro Aros-Mardones, Sreejith Kalpuzha Ashtamoorthy, Narayanan Ayyappan, Gal Badihi, Joseph J. Bailey, Andrew H. Baird, Mark Edward Baird, Sreekumar Vadakkethil Balakrishnan, José António L. Barão-Nóbrega, Adi Barash, Miguel Barbosa, Jos Barlow, Claus Bässler, Matthieu Beaumont, Natalie Beenaerts, Tiago Octavio Begot, Wallace Beiroz, Ricardo Beldade, David M. Bell, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-Cecchi, Cassandra E. Benkwitt, Pamela Medina-Van Berkum, Brandon T. Bestelmeyer, Matthew C. Betts, Maxwell Kelvin Billah, Anne D. Bjorkman, Magdalena Błażewicz, Christopher P. Bloch, Shane A. Blowes, Antonio Bode, Juliano A. Bogoni, Thomas Bolger, Timothy C. Bonebrake, Erik Bonsdorff, Roberta Bottarin, Luke N. Brokensha, Rob W. Brooker, Andrew J. Brooks, Helge Bruelheide, Thiago Almeida Bueno, Claire Laguionie, Mariana Lopes Campagnoli, James Cant, Erica Pellegrini Caramaschi, Alexandre Caron, Tadhg Carroll, Tancredi Caruso, Juan Carvajal-Quintero, Giuseppe Castaldelli, Edward Castañeda-Moya, Pedro V. Castilho, Sonia Zanini Cechin, Shahar Chaikin, Uchangi Manjunatha Chandrashekara, Tory J. Chase, Chaolun Allen Chen, Jorge José Cherem, Sei-Woong Choi, Erica M. Christensen, Alexander V. Christianini, Jackson Wing Four Chu, Peter Coad, Carl Van Colen, Lise Comte, Elisabeth J. Cooper, J. Hans C. Cornelissen, Eddy Cosson, Unai Cotano, Luc Crevecoeur, Shannan Kyle Crow, Graeme S. Cumming, Vanessa S. Daga, Gabriella Damasceno, Gergana N. Daskalova, Claire H. Davies, Robert A. Davis, Frank P. Day, Sussy De-La-Zerda, Amy Elizabeth Deacon, Indradatta De Castro-Arrazola, Steven Degraer, Kharran Deonarinesingh, Juan C. Diaz-Ricaurte, Christopher R. Dickman, Tara Dirilgen, Ciaran John Dolan, J. Emmett Duffy, Timothy E. Dunn, Giselda Durigan, Ciara Dwyer, Steven Earl, Dor Edelist, Graham John Edgar, Sally Edmonson, Ashley K. Elgin, Kari Elsa Ellingsen, Sarah C. Elmendorf, Ruth S. Eriksen, S. K. Morgan Ernest, Ruben Escribano, Paula Cabral Eterovick, Brian S. Evans, Jason D. Everett, Vesela Evtimova, Dan A. Exton, Andrew J. Fairbairn, Filipe Moreli Fantacini, Fabiano Turini Farah, Fábio Zanella Farneda, Mario E. Favila, Philippe Fernandez-Fournier, Braulio Fernández-Zapata, Diogo F. Ferreira, Carola Ferronato, Christopher R. Du Feu, Alessandra Fidelis, David A. Fifield, Vilmar Picinatto Filho, Walter Mesquita Filho, Robert N. L. Fitt, Carlos A. H. Flechtmann, William R. Fraser, Donna L. Fraser, Lídia Freixas, John Fryxell, Garrett J. Fundakowski, Scott Stanley Gabara, Elise Gallois, Mariana Garcia Criado, Emili García-Berthou, Joaquim Garrabou, Andrew R. Gates, Roberto Cazzola Gatti, Anna Gavioli, Tal Gavriel, Benoit Gendreau-Berthiaume, Xingli Giam, Carina Gjerdrum, Michael Glemnitz, Jasmin Annica Godbold, Daniel Gómez-Gras, Rodrigo Barbosa Gonçalves, Andy Goold, Richard R. Gordon, Menachem Goren, Fernando Vilas Boas Goulart, William G. Gould, Meagan M. Graboski, Nicholas A. J. Graham, Maurício Eduardo Graipel, Laura J. Grange, Aaron C. Greenville, Gary D. Grossman, Valeria A. Guinder, Peter Haase, Gary N. Haskins, Kris Havstad, Luise Hermanutz, Michael Julian Hames Hickford, Pamela Hidalgo, Pedro Higuchi, Andrew S. Hoey, Gert Van Hoey, Annika Hofgaard, Kristen T. Holeck, Robert D. Hollister, Richard T. Holmes, Mia Odell Hoogenboom, Joaquín Hortal, Tammy Horton, Chih-Hao Hsieh, Christine L. Huffard, Ida-Maria Huikkonen, Allen H. Hurlbert, Julian Hynes, Pascal Irz, Natalia Macedo Ivanauskas, Akemi Iwayama, Darren K. James, Ute Jandt, Anna M. Jażdżewska, Merlijn Jocque, Sophie T. Johnston, Samuel E. I. Jones, Faith A. M. Jones, Julia A. Jones, Edite Jucevica, Ugis Kagainis, Maiko Kagami, Jungwon Kang, Xuejia Ke, Erin Colleen Keeley, Rebecca Kinnear, Kari Klanderud, Uwe Klinck, Roel Van Klink, Stefan Klotz, Carolien Kockaert, Halvor Knutsen, Matti Koivula, Alessandra Kortz, Peter Kriegel, Chao-Yang Kuo, David J. Kushner, Rosina Kyerematen, Raphaël Lagarde, Lesley T. Lancaster, Ori Frid Landau, Wouter Van Landuyt, Eric R. Larson, Mai Lazarus, Cheol Min Lee, Jonathan S. Lefcheck, Jonas J. Lembrechts, Renato A. Ferreira De Lima, Romullo Guimarães Lima, Nathália G. S. Lima, Cristina Linares, Sandra C. Lindstrom, Francisco Lloret, John David Lloyd, Cleonice Maria Cardoso Lobato, David M. Lodge, Peter Richard Long, Celeste López-Abbate, Adrià López-Baucells, Julio Louzada, Maite Louzao, Antonella Lugliè, Micheli Ribeiro Luiz, S. Ellen Macdonald, Joshua S. Madin, André Lincoln Barroso Magalhães, Rajindra Mahabir, David Maphisa, Thomas Edward Martin, Marcio Martins, Patrick T. Martone, Silvia Matesanz, Shin-Ichiro S. Matsuzaki, Thomas J. Matthews, Iain Mccombe Matthews, Connie J. Maxwell, Kent P. Mcfarland, Brian J. Mcgill, Diane Marie Mcknight, Michael J. Mcwilliam, Jason Meador, Henning Meesenburg, Kristin Meier, Viesturs Melecis, Peter L. Meserve, Christoph F. J. Meyer, Anders Michelsen, Natali Olivia Roman Miiller, Marco Milardi, Nataliya Milchakova, Robert J. Miller, Jonathan Millett, Tom Moens, Luciano F. A. Montag, Jon Moore, Jörg Müller, Akhil Murali, Shauna Ann Murray, Isla H. Myers-Smith, Randall W. Myster, Masahiro Nakamura, Sasi Nayar, Francis Neat, James A. Nelson, Michael Paul Nelson, Boris P. Nikolov, Rym Nouioua, Collins Ayine Nsor, Michael O' Connor, Edward Adzesiwor Obodai, Amy Marie Offland, Romà Ogaya, Hisako Ogura, Thomas A. Okey, Julian D. Olden, Luiz Gustavo Rodrigues Oliveira-Santos, Jeffrey C. Oliver, Esben Moland Olsen, Vladimir G. Onipchenko, Daniel Oro, Dais Ozolins, Krzysztof Pabis, Bachisio Mario Padedda, Facundo X. Palacio, Alain Paquette, Sinta Trilestari Pardede, David M. Patersib, Sarah Pausina, Raphaël Pélissier, Steven C. Pennings, Josep Penuelas, Felipe Walter Pereira, Nivaldo Peroni, Sergio Picó, Francesca Pilotto, Hudson Tercio Pinheiro, Oscar Pizarro, Roberto Pizzolotto, Francesco Pomati, Paulo Santos Pompeu, Dominique Ponton, Eric Post, Nicolas Poulet, Juha Pöyry, Steven J. Presley, Herbert H. T. Prins, Pieter Provoost, Kathleen L. Prudic, Vignesh Punjayil, Petr Pyšek, Pascal Querner, Juan Pablo Quimbayo, Indar W. Ramnarine, Daniel C. Reed, Peter Bernard Reich, Suzanne M. Remillard, Cerren Richards, Anthony James Richardson, Itai Van Rijin, Victor H. Rivera-Monroy, Christian Rixen, Kevin Peter Robinson, Ricardo Rocha, Ricardo R. Rodrigues, Cassy Rodrigues, Bjørn De Roos, Denise De C. De Rossa-Feres, Loreta Rosselli, Peter Charles Rothlisberg, Ana Rubio, Lars G. Rudstam, Catalina S. Ruz, Nancy B. Rybicki, Gunther Van Ryckegem, Andrew L. Rypel, Jon P. Sadler, Victor Satoru Saito, Sofia Sal, Renato Portela Salomão, Nathan J. Sanders, Flavio A. M. Santos, Tiago Gomes Dos Santos, Swapan Kumar Sarker, Sara E. Scanga, Marcus Schaub, Jochen Schmidt, Inger Kappel Schmidt, Robert L. Schooley, Alfred Schultz, Alberto Scotti, Amanda Serpell-Stevens, Filipe C. Serrano, Elizabeth H. Shadwick, Matthew Shaft, Thomas W. Sherry, Erika Mayumi Shimabukuro, Jacek Siciński, Caya Sievers, Fernando Rodrigues Da Silva, Ana Carolina Da Silva, Juliana M. Silveira, Tadeu Siqueira, Arunkumar Kavidapadinjattathil Sivadasan, Prasad Theruvil Parambil Sivan, Agnija Skuja, Amalia L. Slaughter, Jasper A. Slingsby, Joseph R. Smith, Bruno Eleres Soares, Martin Solan, Flaviana Maluf Souza, Gabriel B. G. Souza, Joshua L. Sprague, Ulrich Stachow, J. John Stadt, Christopher D. Stallings, Radoslav Hristov Stanchev, Emily H. Stanley, Brian M. Starzomski, Jose Mauro Sterza, Maarten Stevens, F. Gary Stiles, Stefan Stoll, Rick D. Stuart-Smith, Yzel Rondon Súarez, Laura Super, Sarah R. Supp, Tapio Sutela, Iain M. Suthers, Anna Suuronen, Kerrie M. Swadling, Daniel K. Szydlowski, Hisatomo Taki, Sara Jeanne Snell Taylor, Pablo A. Tedesco, Nils Teichert, Akira Terui, Gary P. Thiede, Anne Thimonier, Oliver Thomas, Peter Allan Thompson, Simon Thorn, Jeremy S. Tiemann, Luís Felipe Toledo, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ignasi Torre, Marcos Adriano Tortato, Kumiko Totsu, Andrew Trant, Robert R. Twilley, Hirokazu Urabe, Pierre Valade, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Jan Vanaverbeke, Tiago Silveira Vasconcelos, Teppo Vehanen, Fábio Venturoli, Hans M. Verheye, Hendrik Jannes Wietse Vermeulen, Arne Verstraeten, Marcelo Vianna, Rui Vieira, João Paulo Santos Vieira-Alencar, Marc Vilella, Jean Ricardo Simões Vitule, Lien Van Vu, Robert B. Waide, Paige S. Warren, Joseph Paul Wayman, Sara L. Webb, Benjamin Weigel, Ellen A. R. Welti, Fritha West, Fulgor Westermann, Matthew A. Whalen, Ethan P. White, Claire E. Widdicombe, Richard Williams, Mark Williamson, Michael R. Willig, Sonja Wipf, Eric J. Woehler, Alje Woldering, Kerry D. Woods, Wu-Bing Xu, Ruthy Yahel, Zeren Yang, Kyle J. A. Zawada, Camila Zornosa-Torres, Assaf Zvuloni

Biological Sciences Faculty Publications

Motivation: Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database.

Main Types of Variables Included: The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised …

Demystifying Misconceptions In Introductory Undergraduate Chemistry Education With 3d Printed Molecular Orbitals, Hiwot Endeshaw, Daniel J. O'Leary

Pomona Senior Theses

Spatial abilities are invaluable skills for the science, technology, engineering, and mathematics (STEM) subjects. However, women, people from low socioeconomic backgrounds, and ethnic minorities are more likely to have less developed spatial abilities, which is one of the many contributing factors for the lack of diversity in STEM subjects like chemistry. Teaching spatial skills to undergraduate chemistry students may address this issue and help increase the diversity of students who go on to continue their education in the subject. 3D printing technology in higher education has exploded in recent years, presenting a unique opportunity to teach “hard to grasp” concepts …

Huchum: The Legacy Of Fire Suppression, Indigenous Land Management, And Media Representation, Carolyn Coyne

Pomona Senior Theses

In my thesis, I examine how various forms of news media from the 1900s to present day in Ohlone territory have framed a particular hegemonic ideology around fire that matches early colonial journal entries – an ideology that is fueled by fear, sensationalism, and exclusion and directly commits violence against the Ohlone people. I investigate this time period because this is when modern news corporations, like The New York Times, rose into prominence. Specifically, I question how media representations of fire inform regulations over controlled burns; what are the similarities in discourse between media framing and policy? What tactics are …

Swimming In Sh*T: Quantifying Lagoon Flushing Impacts On Fecal Indicator Bacteria In Surf Zones Of Three Beaches On The East End Of Long Island, Ny, Brody C. Eggert

Pomona Senior Theses

This thesis investigates how lagoon flushing influences fecal indicator bacteria (FIB) concentrations—specifically enterococcus bacteria—in the surf zones of East Hampton and Southampton, New York. Focusing on the coastal lagoons of Georgica Pond, Sagg Pond, and Mecox Bay, the study analyzes how episodic inlet openings and environmental conditions affect enterococcus levels at adjacent recreational beaches. Using over 700 observations from the Surfrider Foundation’s Blue Water Task Force (BWTF) database, I construct a series of statistical models ranging from ordinary least squares to mixed effects frameworks; this thesis shows my process in developing this model. My analysis reveals that open inlets between …

Gene Expression Changes In Human Cerebral Arteries Following Hemoglobin Exposure: Implications For Vascular Responses In Sah, Chathathayil M Shafeeque, Arif O Harmanci, Sithara Thomas, Ari C Dienel, Devin W Mcbride, Kumar T Peeyush, Spiros L Blackburn

Faculty, Staff and Student Publications

Subarachnoid hemorrhage (SAH), characterized by the presence of hemoglobin (Hb) in the subarachnoid space, significantly impacts cerebral vessels, leading to various pathological outcomes. The toxicity of cell-free Hb released from erythrocytes and its metabolites after SAH causes vasoconstriction and neuronal damage, and correlates with delayed ischemic neurological deficits (DIND). While animal models have provided substantial and invaluable data in the research of aneurysmal SAH, the specific effects of subarachnoid blood on cerebral arteries remain greatly understudied. Here, we describe the changes in the genetic profile of human cerebral arteries exposed to free Hb for 48 h. We performed an ex …

Some Types Of Hyperneutrosophic Set (1): Bipolar, Pythagorean, Double-Valued, Interval-Valued Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

The Neutrosophic Set is a mathematical framework designed to manage uncertainty, characterized by three membership functions: truth (T), indeterminacy (I), and falsity (F). In recent years, extensions such as the Hyperneutrosophic Set and SuperHyperneutrosophic Set have been introduced to address more complex scenarios. This paper proposes new concepts by extending Bipolar Neutrosophic Sets, Interval-Valued Neutrosophic Sets, Pythagorean Neutrosophic Sets, and Double-Valued Neutrosophic Sets using the frameworks of Hyperneutrosophic and SuperHyperneutrosophic Sets. Additionally, a brief analysis of these extended concepts is presented.

Some Types Of Hyperneutrosophic Set (7): Type-M, Nonstationary, Subset-Valued, And Complex Refined, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds upon the foundational advancements introduced in [26,39–43]. TheNeutrosophic Set provides a versatile mathematical framework for addressing uncertainty through its three membership functions: truth, indeterminacy, and falsity [84]. Extensions such as the Hyperneutrosophic Set and the SuperHyperneutrosophic Set have been recently proposed to address increasingly complex and multidimensional problems. Detailed formal definitions of these concepts can be found in [33]. In this paper, we extend the Type-𝑚, Nonstationary, Subset-Valued, and Complex Refined Neutrosophic Sets using the Hyperneutrosophic Set and the SuperHyperneutrosophic Set frameworks.

Some Types Of Hyperneutrosophic Set (6): Multineutrosophic Set And Refined Neutrosophic Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds on the foundational advancements introduced in [22, 29–32]. The Neutrosophic Set pro-vides a flexible mathematical framework for managing uncertainty by utilizing three membership functions: truth, indeterminacy, and falsity. Recent extensions, such as the HyperNeutrosophic Set and the SuperHy-perNeutrosophic Set, have been developed to address increasingly complex and multidimensional challenges. Comprehensive formal definitions of these concepts are provided in [26]. In this paper, we further extend various specialized classes of Neutrosophic Sets. Specifically, we explore extensions of the MultiNeutrosophic Set and the Refined Neutrosophic Set using HyperNeutrosophic Sets and 𝑛-SuperHyperNeutrosophic Sets, providing detailed analysis and examples.

Some Types Of Hyperneutrosophic Set (5): Support, Paraconsistent, Faillibilist, And Others, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

This paper builds upon the foundational advancements introduced in [14, 25–27]. The Neutrosophic Set offers a versatile mathematical framework for addressing uncertainty through its three membership functions: truth, indeterminacy, and falsity. Extensions such as the Hyperneutrosophic Set and the SuperHyperneutrosophic Set have been recently proposed to tackle increasingly sophisticated and multidimensional problems. Detailed formal definitions of these concepts can be found in [20]. In this paper, we extend various specialized classes of Neutrosophic Sets—namely, the Support Neutrosophic Set, Neutrosophic Intuitionistic Set (distinct from the Intuitionistic Fuzzy Set), Neutrosophic Paraconsistent Set, Neutrosophic Faillibilist Set, Neutrosophic Paradoxist Set, Neutrosophic Pseudo-Paradoxist Set, Neutrosophic …

Forestfuzzy, Forestneutrosophic, Forestplithogenic, And Forestrough Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Concepts such as Fuzzy Sets [30, 72], Neutrosophic Sets [53, 55], Rough Sets [37], and Plithogenic Sets [59] have been extensively studied to address uncertainty, with diverse applications across various fields. Recently, TreeFuzzy, TreeNeutrosophic, TreePlithogenic, and TreeRough Sets have been defined [15]. This work examines their extensions: ForestFuzzy, ForestNeutrosophic, ForestPlithogenic, and ForestRough Sets.

Hyperplithogenic Cubic Set And Superhyperplithogenic Cubic Set, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Concepts such as Fuzzy Sets [23, 47], Neutrosophic Sets [32, 33], and Plithogenic Sets [35] have been extensively studied for addressing uncertainty, with diverse applications across numerous fields. Building on the Plithogenic Set, the HyperPlithogenic Set and SuperHyperPlithogenic Set have also gained recognition [15]. A Plithogenic Cubic Set integrates interval-valued and single-valued fuzzy memberships, augmented by multiattribute aggregation using plithogenic structures. This paper defines the HyperPlithogenic Cubic Set and SuperHyperPlithogenic Cubic Set and explores related concepts such as the HyperPlithogenic Fuzzy Cubic Set, HyperPlithogenic Intuitionistic Fuzzy Cubic Set, and HyperPlithogenic Neutrosophic Cubic Set.

Neutrosophic Treesoft Expert Set And Forestsoft Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Concepts such as Fuzzy Sets [28,57],Neutrosophic Sets [42,44], and Plithogenic Sets [48] have been extensively studied to address uncertainty, finding diverse applications across various fields. The Soft Set provides a framework that associates each parameter with subsets of a universal set, enabling flexible approximations [31]. The TreeSoft Set extends the Soft Set by introducing hierarchical, tree-structured parameters, allowing for multi-level data representation [53]. In this paper, we revisit the concept of the Neutrosophic TreeSoft Set, which has been discussed in other studies [8, 34]. Additionally, we propose and examine the Neutrosophic TreeSoft Expert Set by incorporating the framework of the …

Some Graph Parameters For Superhypertree-Width And Neutrosophictree-Width, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Graph characteristics are often studied through various parameters, with ongoing research dedicated to exploring these aspects. Among these, graph width parameters—such as treewidth—are particularly important due to their practical applications in algorithms and real-world problems. A hypergraph generalizes traditional graph theory by abstracting and extending its concepts [77]. More recently, the concept of a SuperHyperGraph has been introduced as a further generalization of the hypergraph. Neutrosophic logic [133], a mathematical framework, extends classical and fuzzy logic by allowing the simultaneous consideration of truth, indeterminacy, and falsity within an interval. In this paper, we explore Superhypertree-width, Neutrosophic treewidth, and t-Neutrosophic tree-width.

Plithogenic Superhypersoft Set And Plithogenic Forest Superhypersoft Set, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

No abstract provided.

Autopoietic Energy Transition Towards Clean And Renewable Energy For Developing Countries, Victor Christianto, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

The global economy's reliance on energy supply and distribution necessitates a shift towards clean and renewable energy sources. This article explores how the economies of energy producers and consumers can be better modeled through the lens of autopoiesis, a concept developed by Humberto Maturana and further elaborated by Fritjof Capra (cf. Web of Life). By viewing energy systems as self-producing and self-maintaining entities, we can gain insights into the dynamics of energy transition in developing countries and identify strategies for fostering sustainable and resilient energy ecosystems.

A Critical Evaluation Of The Criticisms Against Neutrosophic Statistical Methods, Muhammad Aslam, Abdulrahman Alaita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Neutrosophic statistical analysis has gained attention for incorporating the degree of indeterminacy when analyzing imprecise and interval data under uncertainty—an aspect often overlooked by classical statistics, fuzzy statistical analysis, and interval statistics. Recently, critical discussions have emerged regarding the use and applications of neutrosophic statistics, with some questioning its usefulness and validity. In this paper, we present a critical assessment of the existing literature, focusing on areas where misunderstandings and misinterpretations of neutrosophic statistical methods have occurred. We also examine flawed comparisons made between the results of neutrosophic statistics and interval statistics. Furthermore, substantial issues have been identified in the …

A Neutrosophic Approach To Social Phenomena, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Sociology has long sought to understand human societies and the social behaviors within them. It explores the organization, structure, dynamics, and transformations of society over time. However, traditional sociological methods face significant challenges in addressing the complexity and indeterminacy inherent in social data—data that is often ambiguous, incomplete, and contradictory. The Neutrosociology offers a novel approach to studying and modeling social phenomena by employing mathematical and philosophical tools that can accommodate uncertainty.

A Family Of Neutrosophic Estimators For Estimating Mean: An Application To Real Data, Bavita Singh, Abhishek Singh, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

In the realm of sample survey research, the classical statistics approach primarily deals with precise and definitive types of data to estimate population parameters when additional information is available. However, this approach fails when faced with data indeterminacies. To address such ambiguities, neutrosophic statistics emerges as an extension of both fuzzy and classical statistics. Thus, in light of the challenges posed by indeterminacy in sampling, we have introduced a proficient neutrosophic class of estimators, with and without Searls technique (optimization tool) for estimating the mean utilizing additional (ancillary) information under neutrosophic simple random sampling (NeSRS). The expression for the Bias …

A Decision-Space Model Explains Context-Specific Decision Making, Dirk W. Beck, Cory N. Heaton, Luis D. Davila, Lara I. Rakocevic, Sabrina M. Drammis, Danil Tyulmankov, Atanu Giri, Shreeya Umashankar Beck, Qingyang Zhang, Michael Pokojovy, Kenichiro Negishi, Alexis A. Salcido, Neftali F. Reyes, Andrea Y. Macias, Serina A. Batson, Paulina Vara, Raquel J. Ibáñez Alcalá, Safa B. Hossain, Graham L. Waller, Laura E. O'Dell, Travis M. Moschak, Ki A. Goosens, Alexander Friedman

Mathematics & Statistics Faculty Publications

Optimal decision-making requires consideration of internal and external contexts. Biased decision-making is a transdiagnostic symptom of neuropsychiatric disorders. We created a computational model demonstrating how the striosome compartment of the striatum constructs a context-dependent mathematical space for decision-making computations, and how the matrix compartment uses this space to define action value. The model explains multiple experimental results and unifies other theories like reward prediction error, roles of the direct versus indirect pathways, and roles of the striosome versus matrix, under one framework. We also found, through new analyses, that striosome and matrix neurons increase their synchrony during difficult tasks, caused …

Deciphering The Chemistry Of Condensed Aromatic "Black" Carbon And Nitrogen In Amazonian Anthrosols, João Vitor Dos Santos, Aleksandar I. Goranov, Laís G. Fregolente, Marcia C. Bisinoti, Zhenhuan Sun, Klaus Schmidt-Rohr, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

Amazonian anthrosols are renowned for their high fertility and dark color, properties primarily attributed to the abundance of condensed aromatic carbon (ConAC) in the soil organic matter. ConAC, commonly referred to as black carbon, play a key role in the stability and nutrient retention of these soils. However, the processes governing the formation of ConAC and its transformation into oxygenated derivatives remain poorly understood. In this study, we used multiple analytical platforms to investigate the chemistry of ConAC-rich humic acids (HA) extracted from Terra Mulata de Indio, a type of Amazonian anthrosol. The results reveal that ConAC are predominantly …

Building Heat-Resilient Caribbean Reefs: Integrating Thermal Thresholds And Coral Colonies Selection In Restoration, Macarena Blanco Pimentel, Johanna Calle-Triviño, Daniel J. Barshis, Sancia E. T. Van Der Meij, Megan K. Morikawa

Biological Sciences Faculty Publications

Caribbean reefs face increasingly frequent and intense bleaching events, adding to the numerous other threats impacting these ecosystems. Addressing these challenges requires global action to reduce climate drivers, along with local efforts like reef restoration. Active restoration using thermotolerant coral colonies offers a potential strategy to alleviate these impacts; however, gaps remain in identifying context-specific temperature thresholds to guide colony selection and standardize thermotolerance assessment methods. This study addressed these gaps in two phases. First, by determining practical thresholds to differentiate species responses to heat stress; and second, by developing a framework to identify and prioritize resilient colonies for restoration. …

Neutrosophic Twofold Superhyperalgebra And Anti Superhyperalgebra, Takaaki Fujita, Florentin Smarandache

Branch Mathematics and Statistics Faculty and Staff Publications

Neutrosophic Sets are conceptual frameworks designed to address uncertainty. A Neutrosophic TwoFold Algebra is a hybrid algebraic structure defined over a neutrosophic set, combining classical algebraic operations with neutrosophic components. Concepts such as Hyperalgebra and Superhyperalgebra extend classical Algebra using Power Sets and 𝑛-th powersets. Additionally, structures such as NeutroAlgebra and AntiAlgebra have been defined in recent y ears. This paper explores several related concepts, including TwoFold SuperhyperAlgebra and Anti SuperhyperAlgebra.

Application Of Floating Wetlands To Improve Urban Stream Quality, Daniel Chukwunonso Chukwudi

Theses and Dissertations

Urban streams, impacted by urbanization, often exhibit degraded water quality due to elevated nutrient levels, a phenomenon known as urban stream syndrome. This study evaluates the effectiveness of a floating wetland (FW) system in reducing nitrate as nitrogen (NO₃-N) and phosphate (PO₄³⁻) concentrations in a side canal of the Chicago River’s North Branch, adjacent to Goose Island, Chicago, IL, from 2018 to 2023. Using a five-year dataset, including new sampling from May to December 2023, the research addresses two questions: (1) Do FWs lower NO₃-N and PO₄³⁻ concentrations in urban streams? and (2) Do FWs exhibit seasonal differences in nutrient …

Metabarcoding-Biomass Relationships And Internal Standards For Quantitative Dna Metabarcoding, Frances Webber

Open Access Master's Theses

DNA metabarcoding has been widely adopted due to its power in investigating the composition of protistan communities, accurately identifying even small and cryptic taxa. However, the compositional nature of DNA metabarcoding results, and the distortion of natural abundances due to variation of the often-used 18S rRNA gene copy number over several orders of magnitude, renders these results semi-quantitative at best, limiting the application of DNA metabarcoding to ecological study. Here, we constructed mock communities from uni-algal cultures of taxonomically diverse phytoplankton and conducted metabarcoding using multiple primer sets and both DNA and cDNA as PCR templates. For each culture, chlorophyll …

Field Performance Evaluation Of Selectively Bred Eastern Oyster Lines In New Jersey And Rhode Island, Seraphina Satkowski

Open Access Master's Theses

Eastern oyster aquaculture has increased steadily over the last three decades, but the industry has yet to achieve its full potential. In the Northeast USA, production is limited in part by a lack of high performing stocks suited to the geographically broad and heterogenous growing environments. For this study, hatchery lines from Maine, New York, and New Jersey as well as crosses between each hatchery line and the selectively bred Northeast high survival (NEHÒ) line, were deployed at oyster farms in Rhode Island and New Jersey for performance evaluation. Replicate bags of each line were stocked and maintained according to …

Geochemical And Sedimentological Signals Of Bottom Water Oxygen Dynamics From Lake Tanganyika (Zambia), Njahi Mwangala

Theses and Dissertations--Earth and Environmental Sciences

Lake Tanganyika is a large, ancient freshwater body with exceptional biodiversity that is located in the East African Rift System. Lake Tanganyika’s size and longevity make its sedimentary record useful for understanding environmental changes that cross spatial and temporal boundaries. Lake Tanganyika is known to be susceptible to global warming given its tropical location. Over 12 million people living within Lake Tanganyika’s watershed rely on fishing for their income and nutrition. Changes to limnological function driven by climate could therefore have serious implications for human health and biodiversity conservation. This study focuses on using geochemical properties of modern lake bottom …

Late Holocene Paleolimnology Of Lake Tanganyika (East Africa), Leandro Domingos Luz

Theses and Dissertations--Earth and Environmental Sciences

Understanding the long-term responses of ecosystems to climate variability is crucial for predicting and mitigating future changes in the Afrotropics, a region where a significant portion of the population is highly vulnerable to extreme climatic events. Lake Tanganyika, the largest rift lake in East Africa, offers a unique sedimentary archive that can be used to investigate the limnological changes, hydroclimatic shifts, and vegetation dynamics across various timescales. A multi-proxy approach was employed to assess the landscape responses to hydroclimatic fluctuations in the Late Holocene, integrating paleoenvironmental records from radiocarbon-dated sediment cores. This approach involved sedimentology, mineralogy, geochemistry, phytolith analysis, and …

Boy Whose Head Was Filled With Stars: A Life Of Edwin Hubble (2021) By Isabelle Marinov, Maughn Rollins Gregory

Picture Books

Barely a hundred years ago, Edwin Hubble changed the way we understand the universe and our place in it more dramatically than almost anyone else has ever done. As this picture book biography shows, his mind-boggling discoveries can be traced back to childhood questions. The discovery that the world is bigger than we had imagined happens in many ways, and learning that we have some choices in deciding how new facts, new experiences, and new perspectives can matter to us is a necessary part of education.

Facial Chick Sexing: An Automated Chick Sexing System From Chick Facial Image, Marta Veganzones Rodriguez, Thinh Phan, Arthur F.A. Fernandes, Vivian Breen, Jesus Arango, Michael T. Kidd, Ngan Le

Computer Science and Computer Engineering Faculty Publications and Presentations

Chick sexing, the process of determining the gender of day-old chicks, is a critical task in the poultry industry due to the distinct roles that each gender plays in production. While effective traditional methods achieve high accuracy, color, and wing feather sexing is exclusive to specific breeds, and vent sexing is invasive and requires trained experts. To address these challenges, we propose a novel approach inspired by facial gender classification techniques in humans: facial chick sexing. This new method does not require expert knowledge and aims to reduce training time while enhancing animal welfare by minimizing chick manipulation. We develop …