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Incorporating Satellite Derived Cloud Climatologies To Improve High Resolution Interpolation Of Daily Precipitation., Adam M. Wilson, Benoit Parmentier, Brian Mcgill, Rob Guralnick, Walter Jetz

Yale Day of Data

Conservation of biodiversity demands comprehension of evolutionary and ecological patterns and processes that occur over vast spatial and temporal scales. A central goal of ecology is to understand the factors that control the spatial distribution of species and this has become even more important in the face of climate change. However, at global scales there can be enormous uncertainty in environmental data used to model species distributions. Even ‘simple’ metrics such as mean annual precipitation are difficult to estimate in areas with few weather stations and available data sets do not quantify uncertainty in these surfaces. We are developing a …

Vertical Ecology Of The Pelagic Ocean: Quantified Patterns And New Perspectives, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Applications of acoustic and optical sensing and intensive, discrete-depth sampling, in concert with collaborative international research programs, have substantially advanced our knowledge of pelagic ecosystems in the 17 years since the last Deep-water Fishes FSBI Symposium. Although the epipelagic habitat is the best-known, and remote sensing and high-resolution modeling allow near-synoptic investigation of upper layer biophysical dynamics, ecological studies within the mesopelagic and deep-demersal habitats have begun to link lower and upper trophic level processes. Bathypelagic taxonomic inventories are far from complete but recent projects (MAR-ECO and CMarZ, supported by the Census of Marine Life program) have quantitatively strengthened distribution …

Length Structure Of Deep-Pelagic Fishes Sheds New Light To Their Life Histories, M. Heino, David S. Boukal, Tone Falkenhaug, Uwe Piatkowski, F. M. Porteiro, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Here we use a new technique to study life history variation in deep-pelagic fishes from a mid-ocean ridge system. Shape of length distribution in a population is to a significant extent determined by the degree to which an average individual approaches its asymptotic maximum size. Analysing the material from the pelagic trawl hauls taken during the 2004 Mar-Eco expedition along the northern Mid-Atlantic Ridge, we show that length distributions in many deep-pelagic fish species are characterised by negative skew (the left tail of the distribution is longer). In other words, a large proportion of individuals had a size close to …

Understanding Effects Of Changes In Land Use, Environmental Parameters, Habitat Characteristics On The Great Basin Aquatic Invertebrates Using Ecological Stoichiometric Theory, Knut Mehler

UNLV Theses, Dissertations, Professional Papers, and Capstones

Many freshwater ecosystems in the Great Basin have undergone dramatic alteration over the past decades due to groundwater withdrawal, water diversion and changes in land use. These changes have affected benthic food web dynamics by altering the availability of chemical key elements for primary and secondary producers, by loss of biodiversity and extinction of endemic species. However, only few studies are available that addresses the link between changes in land use, habitat characteristics and its effects on benthic macroinvertebrates (BMI) communities comprehensively and little attention has been given to integrating physiochemical aspects to link ecosystem functions.

This dissertation analyzes the …

Phytoplankton In Virginia Lakes And Reservoirs, Harold G. Marshall

Virginia Journal of Science

This study involves a phytoplankton summer/autumn survey in 46 Virginia lakes and reservoirs during 2010-2012. A total of 307 taxa were identified which included several filamentous and colonial cyanabacteria in bloom concentrations. With the exception of one natural lake, the other sites sampled represent impoundments created decades ago, with the majority presently classified as meso- or eutrophic. Among the cyanobacteria were 6 known toxin producers (Anabaena circinalis, Anabaena spiroides, Aphanizomenon flos-aquae, Cylindrospermopsis raciborskii, Limnothrix redekei, and Microcystis aeruginosa). The study characterizes phytoplankton populations in these aging freshwater habitats taken from a large number …

Phytoplankton In Virginia Lakes And Reservoirs, Harold G. Marshall

Biological Sciences Faculty Publications

This study involves a phytoplankton summer/autumn survey in 46 Virginia lakes and reservoirs during 2010-2012. A total of 307 taxa were identified which included several filamentous and colonial cyanabacteria in bloom concentrations. With the exception of one natural lake, the other sites sampled represent impoundments created decades ago, with the majority presently classified as meso- or eutrophic. Among the cyanobacteria were 6 known toxin producers (Anabaena circinalis, Anabaena spiroides, Aphanizomenon flos-aquae, Cylindrospermopsis raciborskii, Limnothrix redekei, and Microcystis aeruginosa). The study characterizes phytoplankton populations in these aging freshwater habitats taken from a large number …

Inter- And Intra-Annual Variability Of Vegetation In The Northern Hemisphere And Its Association With Precursory Meteorological Factors, Boksoon Myoung, Yong-Sang Choi, Seungbum Hong, Seon Ki Park

Mathematics, Physics, and Computer Science Faculty Articles and Research

Determination of phenological variation is one of the most critical challenges in dynamic vegetation modeling, given the lack of a strong theoretical framework. Previous studies generally focused on the timing of a phenological event (e.g., bud-burst or onset of growing season) and its atmospheric prompts, but not on the interactive variations across phenological stages. This study, therefore, investigated the inter- and intra-annual variability existing in all the phenological stages and the relations of the variability with four meteorological variables (surface temperature (Ts), shortwave radiation (SW ), vapor pressure deficit (VPD), and precipitation (PRCP)) using a 25-year (1982-2006) dataset of leaf …

The Feasibility Of Using Vanadium And Nickel To Track Oil Spills In Coastal Environments, Sean Patrick Kenny

LSU Master's Theses

Crude oil has been increasing in world demand over the past century. It is known that oil is resistant to weathering processes and if spilled, can cause serious environmental damage to an area, on land or sea. A complementary approach to current methods of tracking oil and identifying spill-impacted sediments may be to measure trace metals associated with crude oil. Trace metals, such a vanadium (V) and nickel (Ni) are known to be elevated in concentration in some oil sources, but little work has been done on this topic. This research explored less expensive and time-consuming methods to track or …

Impacts Of Artificial Reef Addition On The Nekton Community Of Louisiana Marsh Ponds: A Before-After-Control-Impact Analysis, Kari Elizabeth Klotzbach

LSU Master's Theses

Louisiana’s coastal estuaries are dynamic, highly variable environments that provide nursery areas for numerous recreationally and commercially important species. Louisiana’s coastline is constantly changing due to natural and anthropogenic processes, and it is important to know how nektonic species are impacted by such changes. This study sought to assess the effects of introducing a hard substrate artificial reef on the nekton community of a Louisiana estuary. A before-after-control-impact (BACI) design was used to assess the impacts of artificial reef addition on nektonic fishes and crustaceans in four shallow marsh ponds near Empire, Louisiana. Marsh ponds were sampled by purse seine …

A Global Standard For Monitoring Coastal Wetland Vulnerability To Accelerated Sea-Level Rise, Edward L. Webb, Daniel A. Friess, Ken W. Krauss, Donald R. Cahoon, Glenn R. Guntenspergen, Jacob Phelps

United States Geological Survey: Staff Publications

Sea-level rise threatens coastal salt-marshes and mangrove forests around the world, and a key determinant of coastal wetland vulnerability is whether its surface elevation can keep pace with rising sea level. Globally, a large data gap exists because wetland surface and shallow subsurface processes remain unaccounted for by traditional vulnerability assessments using tide gauges. Moreover, those processes vary substantially across wetlands, so modelling platforms require relevant local data. The low-cost, simple, high-precision rod surface-elevation table–marker horizon (RSET-MH) method fills this critical data gap, can be paired with spatial data sets and modelling and is financially and technically accessible to every …

Trophic Ecology Of Oxygen Minimum Zone Zooplankton Revealed By Carbon And Nitrogen Stable Isotopes, Rebecca Williams

Open Access Dissertations

Oxygen minimum zones (OMZs) are areas in which midwater oxygen concentration can be significantly lower than in non OMZ areas at comparable depths. OMZs are of great interest because of the limits oxygen availability places on life. The potential for OMZ expansion with warming of the oceans has refocused attention on the importance of these areas and their potential impacts on the global carbon cycle. The large open ocean OMZs of the Eastern Tropical Pacific and Arabian Sea are notable for their size, thickness, and the intensity of oxygen depletion (

Here, I use measurements of natural abundance carbon and …

Gradients In Season, Latitude, And Sea Ice: Their Effect On Metabolism And Stable Isotopic Composition Of Antarctic Micronekton, Erica H. Ombres

USF Tampa Graduate Theses and Dissertations

Respiration, metabolic enzyme assays, and body composition parameters were measured in the Antarctic krill Euphausia superba during the summer, fall and winter on the Western Antarctic Peninsula (WAP). E. superba of all sizes decrease their metabolism from the summer to the winter. These same parameters were also measured along the WAP during the austral fall 2010. E. superba's enzyme activity indicated that there was a latitudinal gradient to the decline in metabolism along the WAP with the more northerly sites having significantly higher metabolic enzyme activities than the sites to the south.

Carbon (δ¹³C) and nitrogen (δ^{15 …}

Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones

OES Faculty Publications

Life history scans of fish otoliths are bringing new insight into the structure, connectivity, and movement of fish populations. Data obtained from such scans, however, possess in-herent limitations that have not yet been fully addressed or understood. For example, several investigators have noted delays in otolith elemental uptake that do not appear to reflect habitat exposure. We hypothesized that the 3-dimensional structure of otoliths may produce sampling artifacts in the results obtained from laser ablation scans. To test this hypothesis, we sampled sagittal otoliths from juvenile Atlantic croaker Micropogonias undulatus with laser ablation inductively coupled plasma mass spectrometry to obtain …

Characterization Of Epibenthic And Demersal Megafauan At Mississippi Canyon 252 Following The Deepwater Horizon Oil Spill, Marla Maxine Valentine

LSU Master's Theses

Increased demand for new sources of oil and gas has resulted in an expansion of drilling into deeper waters. With this exploratory drilling come increased risks, which were realized on April 20, 2010 when the blow out preventer on the Macondo Well failed, resulting in the release of a large quantity of oil and gas into the Northern Gulf of Mexico from a bathypelagic source. This unprecedented environmental disaster was coined the Deepwater Horizon Oil Spill by the popular news media. In the months that followed the spill, the lack of knowledge about the pre-spill condition of deep-sea communities in …

Investigations For Utilizing Pteropods As Bioindicators Of Environmental Change Along The Western Antarctic Peninsula, Paul Mark Suprenand

USF Tampa Graduate Theses and Dissertations

Pteropods are holoplanktonic gastropod molluscs found globally. Although species diversity is greater at lower latitudes, species abundance is greater at temperate and polar latitudes. Declines in pteropod populations have not only been correlated to declines of their major predators, but pteropods have also been used as bioindicators of global environmental changes such as ocean acidification. With high latitude abundances, pteropods provide significant sustenance for species such as the Atlantic salmon in the Atlantic Ocean and Pleuragramma antarcticum in the Southern Ocean. Because pteropods eat phytoplankton and other pteropods, factors that affect pteropod abundance influence many trophic levels. This dissertation explores …

Human Impact On Atolls Leads To Coral Loss And Community Homogenisation: A Modeling Study, Bernhard Riegl, Charles R. C. Sheppard, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

We explore impacts on pristine atolls subjected to anthropogenic near-field (human habitation) and far-field (climate and environmental change) pressure. Using literature data of human impacts on reefs, we parameterize forecast models to evaluate trajectories in coral cover under impact scenarios that primarily act via recruitment and increased mortality of larger corals. From surveys across the Chagos, we investigate the regeneration dynamics of coral populations distant from human habitation after natural disturbances. Using a size-based mathematical model based on a time-series of coral community and population data from 1999–2006, we provide hind- and forecast data for coral population dynamics within lagoons …

The Relation Among Essential Habitat, Ocean Acidification, And Calcification On The Nantucket Bay Scallop (Argopecten Irradians), Bryanna Joy Broadaway

Graduate Doctoral Dissertations

The relation among essential habitat, ocean acidification, and calcification in Argopecten irradians (Lamarck 1819) was examined through field and laboratory research. Three major questions were addressed: 1) What habitat conditions are associated with abundant populations of bay scallops in Nantucket Harbor? 2) How might future predictions of ocean pH decline affect the biomineralization of shell by bay scallop across juvenile and adult life stages? 3) Are there biochemical indicators that can inform our understanding on how the bay scallop may cope with ocean acidifying events? Elemental fingerprinting of adult and juvenile Nantucket bay scallop shells, A. irradians, revealed distinct element/Ca …

Heterogeneous Detection Probabilities For Imperiled Missouri River Fishes: Implications For Large-River Monitoring Programs, Joshua T. Schloesser, Craig P. Paukert, Wyatt J. Doyle, Tracy D. Hill, Kirk D. Steffensen, Vince H. Travnichek

United States Geological Survey: Staff Publications

Occupancy modeling was used to determine (1) if detection probabilities (p) for 7 regionally imperiled Missouri River fishes (Scaphirhynchus albus, Scaphirhynchus platorynchus, Cycleptus elongatus, Sander canadensis, Macrhybopsis aestivalis, Macrhybopsis gelida, and Macrhybopsis meeki) differed among gear types (i.e. stationary gill nets, drifted trammel nets, and otter trawls), and (2) how detection probabilities were affected by habitat (i.e. pool, bar, and open water), longitudinal position (five 189 to 367 rkm long segments), sampling year (2003 to 2006), and season (July 1 to October 30 and October 31 to June 30). Adult, large-bodied fishes were …

Links From Mantle To Microbe At The Lau Integrated Study Site: Insights From A Back-Arc Spreading Center, Margaret K. Tivey, Erin Becker, Roxanne Beinart, Charles R. Fisher, Peter Girguis, Charles H. Langmuir, Peter J. Michael, Anna-Louise Reysenbach

Biology Faculty Publications and Presentations

The Lau Integrated Study Site (ISS) has provided unique opportunities for study of ridge processes because of its back-arc setting in the southwestern Pacific. Its location allows study of a biogeographical province distinct from those of eastern Pacific and mid-Atlantic ridges, and crustal compositions along the ridge lie outside the range of mid-ocean ridge crustal compositions. The Lau ISS is located above a subduction zone, at an oblique angle. The underlying mantle receives water and other elements derived from the downgoing lithospheric slab, with an increase in slab influence from north to south. Water lowers the mantle melting temperature and …

Sorta Situ: The New Reality Of Management Conditions For Wildlife Populations In The Absence Of "Wild" Spaces, Barbara A. Wolfe, Roberto F. Aguilar, A. Alonso Aguirre, Glenn H. Olsen, Evan S. Blumer

United States Geological Survey: Staff Publications

The rate of species loss today is approaching catastrophic levels. Scientists project that over the next two decades, more than 1 million species of plants and animals will become extinct. E.O. Wilson has estimated that "the rate ofloss may exceed 50,000 a year, 137 a day ... this rate, while horrendous, is actually the minimal estimate, based on the species/area relationship alone" (Kellert and Wilson 1993, p. 16; Aguirre 2009). Ever-expanding communities, strained natural resources, changes in land use, and other anthropogenic drivers are compromising ecosystems and rapidly changing the landscape and the availability of "wild" spaces.

Gene Transcription In Sea Otters (Enhydra Lutris); Development Of A Diagnostic Tool For Sea Otter And Ecosystem Health, Lizabeth Bowen, A. Keith Miles, Michael Murray, Martin Haulena, Judy Tuttle, William Van Bonn, Lance Adams, James L. Bodkin, Brenda Ballachey, James A. Estes, M. Tim Tinker, Robin Keister, Jeffrey L. Stott

United States Geological Survey: Staff Publications

Gene transcription analysis for diagnosing or monitoring wildlife health requires the ability to distinguish pathophysiological change from natural variation. Herein, we describe methodology for the development of quantitative real-time polymerase chain reaction (qPCR) assays to measure differential transcript levels of multiple immune function genes in the sea otter (Enhydra lutris); sea otter-specific qPCR primer sequences for the genes of interest are defined. We establish a ‘reference’ range of transcripts for each gene in a group of clinically healthy captive and free-ranging sea otters. The 10 genes of interest represent multiple physiological systems that play a role in immuno-modulation, …

Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

We explored the role of light-saturated (carbon-limited) photosynthesis on δ¹³C of turtlegrass (Thalassia testudinum Banks ex Konig) populations from the clear, blue waters of the Great Bahama Bank and the turbid, green waters of Florida Bay using field observations and radiative transfer models. Consistent with numerous previous observations, leaf δ¹³C decreased significantly with water depth in both regions. However the δ¹³C for Bahamas turtlegrass was 3 parts per thousand heavier than that for Florida Bay turtlegrass at equivalent depths, and broadband irradiance explained even less of the δ¹³C variations than depth. Instead, leaf δ¹³C showed a stronger relationship to …

Mangroves, Mudbanks And Seawalls: Political Ecology Of Adaptation To Sea Level Rise In Suriname, Ravic Nijbroek

USF Tampa Graduate Theses and Dissertations

This study seeks to understand how global discourses of sea level rise (SLR) and mangrove ecology influence national climate change adaptation policy to reduce coastal vulnerability in Suriname. A majority of the Surinamese population lives along the low elevation coastal zone and is highly exposed to projected SLR. Failure by the international community to reach agreement on climate change mitigation means that vulnerable coastal communities must adapt. The Suriname coast is predominantly shaped by mudbanks and mangroves which together provide protection against coastal erosion and trap sediments resulting in coastal accretion. Knowledge claims of mangrove ecology and utility in SLR …

Biomass And Mass Balance Isotope Content Of Mussel Seep Populations, Philip Martin Riekenberg

LSU Master's Theses

Cold seep mussels, Bathymodiolus childressi, are common cold seep constituents that form large populations at upper continental slope (500-1000 m) cold seep sites in the Northern Gulf of Mexico. These mussels utilize methane present through symbiotic relationships with methanotrophic bacteria. This study uses a coupled isotope technique to determine the relative incorporation of respiratory carbon in the shell as a measure of the availability of methane between different seep sites. This method indicates a higher abundance of methane at the Brine Pool site than at the Bush Hill site which appears significantly more resource limited and that changes in methane …

Function And Diversity Of The Ship, Trinity, And Tiger Shoal Complex, With Emphasis On Macrofauna And Spawning Blue Crabs (Callinectes Sapidus), Carey George Gelpi Jr.

LSU Doctoral Dissertations

The ecological and economic value of sandy shoals off the Louisiana coast is not well understood. During three years of comprehensive benthic sampling and environmental measurements I studied the Ship, Trinity, Tiger Shoal Complex (STTSC), which comprises changing and discrete benthic habitats including high relief sandy shoals, and muddier, mostly deeper off-shoal areas, prone to hypoxia. Benthic macrofaunal assemblages of shoals included endemic species, and shoal communities were significantly different from each other and the muddier offshoal habitat, contributing to northern Gulf of Mexico (GoM) regional biodiversity. Sand percentage was the most influential environmental parameter shaping macrofaunal community composition across …

Severe 2010 Cold-Water Event Caused Unprecedented Mortality To Corals Of The Florida Reef Tract And Reversed Previous Survivorship Patterns, Diego Lirman, Stephanie Schopmeyer, Derek Manzello, Lewis J. Gramer, William F. Precht, Frank E. Muller-Karger, Kenneth Banks, Brian Barnes, Erich Bartels, Amanda Bourque, James Byrne, Scott Donahue, Janice Duquesnel, Louis Fisher, David S. Gilliam, James C. Hendee, Meaghan E. Johnson, Kerry Maxwell, Erin Mcdevitt, Jamie Monty, Digna Rueda, Rob Ruzicka, Sara Thanner

Marine & Environmental Sciences Faculty Articles

Background

Coral reefs are facing increasing pressure from natural and anthropogenic stressors that have already caused significant worldwide declines. In January 2010, coral reefs of Florida, United States, were impacted by an extreme cold-water anomaly that exposed corals to temperatures well below their reported thresholds (16°C), causing rapid coral mortality unprecedented in spatial extent and severity.

Methodology/Principal Findings

Reef surveys were conducted from Martin County to the Lower Florida Keys within weeks of the anomaly. The impacts recorded were catastrophic and exceeded those of any previous disturbances in the region. Coral mortality patterns were directly correlated to in-situ and satellite-derived …

Climate And Vegetation Change In The Newberry Mountains, Southern Clark County, Nevada, Ross Joseph Guida

UNLV Theses, Dissertations, Professional Papers, and Capstones

Ecological studies have shown worldwide that vegetation is being affected by climate change. Species are shifting to new elevations and physiographic positions to adapt to changes in their environment. More specifically, paleoecology studies in the Mojave Desert have shown shifting vegetation patterns in response to past warming and precipitation changes. Recent studies have shown mortality among desert plants related to extended drought and warming. However, few studies have shown how the geographic distribution of Mojave Desert species has changed during this most recent period of warming. This study addresses this gap in the literature by focusing on several plant species …

Introduction To “Environmental Contaminants In Biota, 2nd Edition”, W. Nelson Beyer, James P. Meador

United States Geological Survey: Staff Publications

Ecotoxicology is the study of the movement of environmental contaminants through ecosystems and their effects on plants and animals. Examining tissue residues of these contaminants in biota is basic to ecotoxicology, both for understanding the movement of contaminants within organisms and through food chains, and for understanding and quantifying injuries to organisms and their communities. This book provides guidance on interpreting tissue concentrations of environmental contaminants.

Tissue concentrations have long been used both to identify the cause of toxicity in animals and as a measure of the severity of toxicity. More recently, they have been incorporated into environmental models, tying …

Modeling The Population Effects Of Hypoxia On Atlantic Croaker (Micropogonias Undulatus) In The Northwestern Gulf Of Mexico, Sean Brandon Creekmore

LSU Master's Theses

The northwestern Gulf of Mexico currently experiences a large hypoxic area (“dead zone”) during the summer. While the local effects of hypoxia on organisms have been documented, the population-level effects are largely unknown. I developed a spatially-explicit, individual-based model to analyze how hypoxia effects on Atlantic croaker reproduction, growth, and mortality in the northwestern Gulf of Mexico could lead to population-level responses. The model follows the hourly growth, mortality, reproduction, and movement of individuals on a 300 x 800 spatial grid of 1 km2 cells for 100 years. Chlorophyll-a concentration, water temperature, and dissolved oxygen were specified daily for each …

From Source To Sink: An Isotopic Perspective On The Biogeochemical Relationship Between The Everglades And Florida Bay, Ana Maria Hoare

USF Tampa Graduate Theses and Dissertations

Increasing human populations and activities in coastal areas have led to high nutrient loading and estuarine ecosystem decline. Natural hydrological patterns in South Florida have been drastically altered by changes in water management and land use practices. As a result Florida Bay has experienced a series of negative ecosystem effects including hypersalinity events, degradation of water quality, and harmful algal blooms and declines in upper trophic level populations. To remediate ecosystem decline in Florida's coastal ecosystems, the Comprehensive Everglades Restoration Plan proposes to restore a more natural hydrologic flow in the Everglades. It is expected hydrologic restoration efforts will change …