Digital Commons Network^™

Comparative Study For Channel Pairing In Noma Ofdm- Cdma System, Hazem H. El-Banna, Nelly M. Shafik

Mansoura Engineering Journal

Orthogonal Multiple Access such as OFDM technique became inadequate scheme since it provides limited spectral efficiency and limited number of users. In addition to Orthogonal Multiple Access (OMA), Non-Orthogonal Multiple Access (NOMA) technique is applied in 5th generation of mobile communications that enhances both spectral efficiency and capacity with high Quality of Service (QoS). In this paper, three techniques were combined NOMA, OFDM, and CDMA in order to have optimal system performance in the presence of worst fading channel situations; fast frequency selective Rayleigh multi-path fading channel. The main contribution of this paper is the novel channel pairing technique introduced …

An Estimation Study Of The Co2 Emissions In Saudi Arabia Using Machine Learning, Mohammed A. Albalawi, M.M. El-Halwany, Mahmoud H. Mahmoud, Mohamed Gar Alalm

Mansoura Engineering Journal

As part of the 2015 Paris Climate Agreement, the Kingdom of Saudi Arabia (KSA) pledged to implement policies aimed at reducing greenhouse gas emissions. The 2030 Vision, which KSA unveiled with the goal of building a more sustainable and diverse economy, led to a number of projects, such as the national renewable energy program, the Saudi green initiative, and the circular carbon economy. Additionally, KSA just revealed a bold plan to achieve net-zero status by 2060. The Kingdom pledged to cut its carbon emissions by 278 million tons of CO2eq (equivalent) yearly by 2030 in its revised nationally determined contribution …

Comparison Of Pcr-Based Methods For The Detection Of Canned Tuna Species, Chloe P. Castanon, Denise Hernandez, Akshay N. Khetrapal, Rosalee S. Hellberg

Food Science Faculty Articles and Research

Canned tuna is susceptible to mislabeling due to its high consumer demand, complex global supply chains, and range of prices. DNA barcoding of a short fragment of the mitochondrial control region (CR), termed the CR mini-barcode, has been established as an effective method for tuna species identification. However, the high level of DNA degradation in canned tuna products reduces the effectiveness of this method. Therefore, this study aimed to compare CR mini-barcoding to targeted (i.e., real-time or multiplex) PCR-based methods to determine the most effective approach for canned tuna species identification. DNA was extracted in duplicate from 24 canned tuna …

Symbiotic Aspergillus Terreus Alleviates Drought And Waterlogged Stress In Zea Mays L., Hazrat Ali, Fayaz Asad, Naveen Dilawar, Vasila Sharipova, Imtiaz Ahmad, Abida Zeb

Turkish Journal of Botany

The interaction concerning rhizospheric fungi and plants is essential for enhancing plant resilience in the face of abiotic stress conditions. This study investigated the effects of the rhizospheric fungus Aspergillus terreus on maize (Zea mays L.) growth under both drought and waterlogging conditions. Our findings confirmed that inoculation with A. terreus mitigated the adverse effects of drought and waterlogging conditions on maize growth. Plants treated with Aspergillus terreus (A. terreus) exhibited enhanced root and shoot length, fresh and dry weight as well as enhanced chlorophyll content in plants compared to control, under stress-related conditions. Compared to the control group, A. …

Advanced Deep Learning Approaches For The Accurate Classification Of Phallaceae Fungi With Explainable Ai, Eda Kumru, Fati̇h Eki̇nci̇, Koray Açici, Ömer Burak Altindal, Mehmet Serdar Güzel, Ilgaz Akata

Turkish Journal of Botany

In this study, deep learning (DL)-based models were developed for the classification of 5 fungal species from the Phallaceae family (Clathrus ruber, Colus hirudinosus, Mutinus caninus, Phallus impudicus, and Pseudocolus fusiformis). ConvNeXT achieved the highest performance with 98% accuracy, 98% precision, 98% recall, and 98% F1-score. EfficientNetB4 and Xception also performed well with 96% accuracy. In contrast, lighter models such as MobileNetV2 and MixNet S showed significantly lower accuracy (84% and 80%, respectively). Among the explainable artificial intelligence (XAI) techniques, gradient-weighted class activation mapping (Grad-CAM) and Integrated Gradients showed that high-accuracy models focus more effectively on biologically meaningful regions. In …

Erratum To “Anatomical And Palynological Studies On Turkish Primula Taxa (Primulaceae) And Their Taxonomic And Phylogenetic Significance [Turkish Journal Of Botany 49 (4) 2025 325-348 ] ”, Deni̇z Ulukuş, Esengül Özkaymakoğlu, Rebecca Stubbs, Hüseyi̇n Baykal, Kami̇l Coşkunçelebi̇, Osman Tugay, Barbara Keller, Elena Conti, Ferhat Celep

Turkish Journal of Botany

This erratum addresses an error concerning Figure 5 in the original published version of this article. During the typesetting process, Figure 5 was partially omitted, resulting in an incomplete figure being published.To correct this oversight and ensure the accuracy of the scholarly record, the complete Figure 5 is provided below for reference.

Link to the original article: https://doi.org/10.55730/1300-008X.2866

Next-Generation Biotechnology And Breeding Strategies For The Development Of Biotic Stress-Resistant Sugar Beet, Songül Gürel, Mehmet Cengi̇z Baloğlu, Pinar Baloğlu, Mehmet Kolçak, Ferhat Ulu, Ömer Can Ünüvar, Mehmet Örgeç, Özge Kaya, Ramazan Polat, Cemi̇le Köseoğlu, Yasemi̇n Çeli̇k Altunoğlu, Hati̇ce Korkmaz Güvenmez, Ekrem Gürel

Turkish Journal of Botany

Sugar beet is a high-sucrose crop primarily used for sugar production, and it is now gaining attention as a promising source for bioethanol production and cattle feed. This crop is also utilized for the extraction of pectin and the production of molasses. Despite its utilization across a wide range of industries, abiotic and biotic stress factors greatly reduce the productivity of the cash crop sugar beet. In this paper, we focus on the development of biotic stress-resistant sugar beet plants through various classical and biotechnological applications. In recent decades, omics technologies, next-generation sequencing, gene editing/silencing, and overexpression techniques have been …

Floral Trait Diversity Supports Multiple Pollination Systems Across Urban Habitats In One Of The World's Greenest Cities, Ana Paula Sales De Araujo Franco, Maxwell Da Rosa Oliveira, Evaldo Benedito De Souza, Ingrid Lohani Degering Brand, Marcus Paulo Goncalves Rosa, Bruno Henrique Dos Santos Ferreira, Maria Rosângela Sigrist

Turkish Journal of Botany

Green cities comprise a variety of habitats subject to different levels of anthropogenic pressure, ranging from completely unvegetated areas to vast green spaces such as linear parks. In this scenario, cities can support different ecological processes and ecosystem functions, which vary qualitatively and quantitatively between different habitat types along the urbanization gradient. Specifically, green spaces and ruderal plants can support pollination services in urban ecosystems, providing food resources (e.g., nectar, pollen, oil), reproduction supports (copulation sites), and nesting sites for pollinators. As a result, plant species and their floral resources are important for pollinator diversity and the maintenance of the …

Comparative Pollen Morphology Of The Genus Rhaponticoides Vaill. (Asteraceae) In Türkiye: Implications For Taxonomy And Phylogeny, Foroogh Tavakoli, Gürkan Semi̇z, Batikan Günal, Meryem Bozkurt, Tuna Uysal

Turkish Journal of Botany

The main focus of this research is the palynological investigation of Rhaponticoides Vaill. species naturally occurring in Türkiye. Light microscopy and scanning electron microscopy (SEM) were employed to examine the pollen morphology of nine Rhaponticoides species in detail. Hierarchical cluster analysis (HCA) was also conducted to identify closely related species and distinguish the investigated taxa based on palynological traits. The study found that the pollen grains were tricolporate, isopolar, monad, and radially symmetric, with an oblate-spheroidal shape as indicated by the polar/equatorial (P/E) ratio. The pollen measurements derived from the P/E ratio ranged between 0.85 and 1, values associated with …

Comparative Analysis Of The Complete Chloroplast Genome Of The Rare Endemic Palm Pinanga Arinasae Witono From Bali, Indonesia, Ni Putu Sri Asih, Risha Amilia Pratiwi, Istiana Prihatini, Paramita Cahyaningrum Kuswandi, Evy Yulianti, Arief Priyadi

Turkish Journal of Botany

Pinanga arinasae is an endangered species endemic to Bali, Indonesia. Our study aims to characterize its chloroplast genome, compare it with other chloroplast genomes, including its phylogenetic position within the Arecoideae subfamily, and identify potential molecular markers. P. arinasae chloroplast genomes characterization involves Illumina-based sequencing, de novo genome assembly, gene annotation, amino acid frequency, codon usage pattern analysis, and Simple Sequence Marker (SSR) identification. Comparative analysis include phylogenetic tree reconstruction, comparison of amino acid frequency, codon usage pattern, SSR number, inverted repeat junction arrangement, genome length, GC content, and gene number. Nucleotide diversity is calculated to identify substitution markers. The …

Editorial: Molecular Mechanisms Of Ion Channel Activation And Modulation, Meng Cui, Miao Zhang

Pharmacy Faculty Articles and Research

"Ion channels are integral membrane proteins that regulate the passage of ions across cell membranes, thereby shaping processes as diverse as neuronal signaling, muscle contraction, and hormone secretion. Channel activation is typically initiated by a stimulus such as voltage, ligand binding, or mechanical stress that induces conformational changes and opens the channel pore. Beyond activation, channels are subject to fine-tuned modulation by a wide range of endogenous and exogenous agents, from lipids and neurotransmitters to pharmacological drugs. Modulators can stabilize the open, closed, or inactivated states, shift ligand affinities, or alter gating kinetics. Dissecting the structural and dynamic basis of …

Investigating The Role Of Chaperones And Sequestrases In Misfolded Protein Sequestration, Sarah Rose Rolli

Dissertations (1934 -)

Protein homeostasis, or proteostasis, is responsible for a folded and functional proteome and is essential for cell survival. Proteins can misfold during stress or because of mutation. The accumulation of misfolded proteins is observed in many diseases, including Huntington’s disease. Misfolded proteins will clump together into inclusions, which can be sequestered to membrane-less compartments by proteostasis mechanisms. Several proteins, including chaperones, co-chaperones, and other proteins, have been identified as sequestrases that target inclusions and misfolded proteins to different protein quality control (PQC) compartments. The juxtanuclear quality control (JUNQ) compartment forms in the nucleus-vacuole junction in yeast cells, and several soluble …

Cells Stably Expressing Shrna Against Myo10 Display Altered Cell Motility, Joanna A. Mas, Chase E. Cristella, Vu Hao M. N. Phan, Lillian S. Wendt, Charlotte A. Rose, Abigail Ali, David F. Carpio, Christine Cole, Paige Embley, Jack E. Hoskins-Harris, Delia Johnson, Noelle Ledoux, Hannah W. Lwin, Sarah Salah, Erin Weisbart, Stacey J. Criswell, Omar A. Quintero-Carmona

Biology Faculty Publications

Myosin-X (MYO10) is an actin-based motor protein involved in cytoskeletal dynamics, membrane interactions, and integrin-mediated adhesion. To investigate MYO10's cellular roles, we generated MYO10 knockdown (MYO10KD) HeLa and COS7 cell lines using lentiviral shRNA. Compared to wild-type cells, both MYO10KD lines showed reduced proliferation and impaired cell migration in wound assays. Additionally, there were fewer edge filopodia in HeLa cells. Furthermore, MYO10KD cells demonstrated increased spreading on laminin-coated substrates, suggesting altered integrin activation and cytoskeletal linkage. Our results reinforce MYO10’s importance in cell proliferation, adhesion, and migration. These MYO10KD lines provide an accessible cell culture model for future study of …

Ground-Based Modeling Of Deep-Space Risks To The Spleen And Intestine In Mice, Edith Nathalie Pineda Sotomayor

Theses and Dissertations

Deep-space missions, such as those planned for the cis-lunar space and Mars, pose unique challenges to astronaut health due to prolonged microgravity (MG) exposure and low-dose chronic irradiation (CIR). Understanding the impact of these stressors on secondary lymphoid tissues, such as the spleen and intestine, is crucial for ensuring crewmembers' well-being, given the impracticality of conducting this research with human samples. Using a ground-based facility, we exposed C57BL/6 female and male mice to CIR (1.74 Gy at a dose rate of 0.0029 Gy/h) and/or simulated MG (SMG) via hind limb unloading (HLU) for one month. Spleen and intestinal tissues were …

Metabolic Shifts In Murine Inner Ears Mimicking Erythrocytes And Plasma Reveal Diagnostics And Early Predictors For Age-Related Hearing Loss, Qi Guo, Zhenjiang Li, Cheng Luo, Changhan Chen, Xi Long, Yidan Wang, Qingfen Qiang, Fang Yu, Wuping Liu, Yujin Zhang, Rodney E Kellems, Yang Xia

Faculty, Staff and Student Publications

Age-related hearing loss (ARHL) is a major public health concern, driven by the interplay of multiple factors. Here, we reveal spatiotemporal metabolic shifts in murine inner ears mirroring erythrocytes and plasma. Isotope-labeled glucose tracing demonstrates a metabolic rerouting favoring glycolysis over the pentose phosphate pathway, alongside downregulation of the tricarboxylic acid cycle, indicating impaired energy production and redox homeostasis. Accumulation of medium- and long-chain acylcarnitines further exacerbates lipotoxicity. Notably, age-dependent depletion of arginine, lysine, proline, and glycine disrupts the arginine-polyamine-urea cycle. Translationally, UK Biobank plasma metabolomics links omega-6 fatty acids, linoleic acid, glycine, and albumin to ARHL resilience, while branched-chain …

Human Cerebral Organoids Model Tumor Initiation And Infiltration In An Autologous Astrocyte-Supported Setting, Esther Schickel, Tamara Bender, Leon Kaysan, Simone Hufgard, Margot Mayer, David R Grosshans, Christiane Thielemann, Insa S Schroeder

Faculty, Staff and Student Publications

Efforts to efficiently target brain tumors are constrained by the dearth of appropriate models to study tumor behavior toward treatment approaches as well as potential side effects to the surrounding normal tissue. We established a reproducible cerebral organoid model of brain tumorigenesis in an autologous setting by overexpressing

New Wisconsin State Records For Two Species Of Eusphalerum Kraatz (Coleoptera: Staphylinidae: Omaliinae), Daniel K. Young, Jordan Marché Ii

The Great Lakes Entomologist

ABSTRACT: In Wisconsin, only one published species record exists for the omaliine rove beetle genus Eusphalerum. Two card-mounted specimens of Eusphalerum pothos were located in the research collection at the University of Wisconsin-Madison. The collection event label provided no date but the Bayfield, Wisconsin location is consistent with an 1895 species list provided by Wickham.

New state records are confirmed for two species: Eusphalerum carolinensis and Eusphalerum convexum. A single specimen of E. carolinensis was collected on Rubus sp. in Dane County on 27 May 2017, while a series of 10 E. convexum came from Prunus spp. in Monroe County …

A Bumble Bee In A Haystack: Chance Observation Of An Overwintering Rusty Patched Bumble Bee, Bombus Affinis (Hymenoptera:Apidae) Gyne, Bradley M. Herrick, Susan G. Carpenter

The Great Lakes Entomologist

Bombus affinis (rusty-patched bumble bee) Cresson is listed as a federally endangered species in the United States and Canada. It is globally “imperiled” (G2) and listed as “critically endangered” on the International Union for the Conservation of Nature (IUCN) Red List of Threatened Species. While the causes of the species’ precipitous decline are relatively unknown, researchers suspect introduced pathogens, habitat loss and degradation, competition with non-native bees, and climate change. Conservation strategies should encompass all aspects of the species’ life cycle. However, habitat selection of new overwintering gynes (gynes become queens when they establish nests in the spring) is the …

Injury To Soybean Seedlings From Alfalfa Weevil (Coleoptera: Curculionidae) Larvae, Robert L. Koch, M. Lourdes Chamorro

The Great Lakes Entomologist

Alfalfa weevil, Hypera postica (Gyllenhal) (Coleoptera: Curculionidae), is primarily a pest of alfalfa, but it has been reported feeding on other plants, including soybean. The relatively limited literature on H. postica in soybean indicates that adults and larvae can feed on soybean, but it is not suitable for larval development and survival. There have been instances of H. postica adults moving from alfalfa to nearby soybean fields where they have inflicted significant injury to the soybean plants. Here we report an instance of H. postica larvae causing severe feeding injury to soybean. This infestation of soybean was the result of …

Variability In Arthropod Community Surveys: Observations Of Ground-Dwelling Arthropods Are Dependent On Methodological Choices, Katherine Mcnamara Manning, Kayla I. Perry, Christie A. Bahlai

The Great Lakes Entomologist

Sampling approaches are commonly adapted to reflect the study objectives in biodiversity monitoring projects. This approach optimizes findings to be locally relevant but comes at the cost of generalizability of findings. Here, we detail a comparison study directly examining how researchers’ choice of arthropod trap and level of specimen identification affects observations made in small-scale arthropod biodiversity studies. Four arthropod traps (pitfall traps, yellow ramp traps, yellow sticky cards, and novel jar ramp traps) were compared with respect to an array of biodiversity metrics calculated at two levels of identification. The arthropod community captured varied by trap type. Pitfalls and …

Pollen Loads Of Insects Caught In Cultivated Fields Of Oilseed Pennycress, Frank Forcella, Ellinor Sheik, Michael Zavada, Mark Bernards

The Great Lakes Entomologist

Although many insects are known to be associated with the floral canopies of oilseed pennycress (Thlaspi arvense), those that carry the crop’s pollen are unknown. During early spring of 2024 insects associated with pennycress flowers in Illinois and Minnesota were captured in sweep nets, frozen, sorted by species, and sonicated to remove pollen. Pollen grains were counted, and pollen loads per individual insect were calculated. Members of the orders Diptera, Hemiptera, and Hymenoptera accounted for 66%, 16%, and 14% of the 850 insects examined, but these same orders were responsible, respectively, for 18%, 3%, and 78% of the …

Nest Pollen Provisions From An Urban Population Of Megachile Campanulae (Hymenoptera: Megachilidae) In Minnesota Are Consistent With Oligolectic Classification., Lam D. Le, Thea A. Evans, Colleen Satyshur

The Great Lakes Entomologist

The conservation of bees is crucial for maintaining the essential ecological services they provide. Understanding bee species' risk of extinction is a key part of conservation efforts, and can include assessment of dietary specialization, which has been linked to higher extinction risk. Dietary specialization in bees, called oligolecty, occurs when females select pollen only from closely related plants to feed their larvae. While the solitary bee, Megachile (Chelostomoides) campanulae (Robertson 1903), has been associated with flowers in the genus Campanula L. (Campanulaceae: Asterales), evidence from pollen analysis is limited, and dietary classification is reported inconsistently. This study examined dietary specialization …

Nocturnal Flight Periodicity Of Caddisflies (Trichoptera) Along The Lake Huron Shoreline Of Drummond Island, Michigan (Usa), Robert A. Haack, David Houghton

The Great Lakes Entomologist

Over 7000 caddisfly specimens, representing 33 species in 10 families, were collected between sunset and sunrise on 12 nights: three nights each during early July and early August in both 2023 and 2024. Collections were made on the southwestern side of Drummond Island along the shoreline of Lake Huron. Sampling occurred for five minutes at 15-minute intervals from near sunset (21:00) to 01:00 and then once again at 03:00 and 05:00. Nocturnal flight periodicity was broadly similar between years and months, with mean caddisfly abundance and species richness peaking at about one hour after sunset. Mean species accumulation varied between …

Initial Changes In Ground Beetle (Carabidae: Coleoptera) Assemblages After Creating Gaps Of Varying Sizes In Mature Northern Hardwoods Forests In Wisconsin, Robert A. Haack, Robert E. Acciavatti, Toby R. Petrice, Robert L. Davidson, Terry F. Strong

The Great Lakes Entomologist

Managers of northern hardwood forests in the Great Lakes region create gaps in the forest canopy of various sizes during harvesting to achieve different silvicultural objectives. Single-tree harvesting favors recruitment of shade-tolerant tree species by creating small gaps in the canopy, whereas group selection creates larger gaps that can favor shade-intolerant tree species. We evaluated changes in carabid beetle abundance and diversity in harvest-created gaps of five sizes (gap diameters of 6, 10, 20, 30, and 46 m) and uncut forests in northern Wisconsin where sugar maple (Acer saccharum) was the dominant tree species. Gaps were cut during …

Michigan Entomological Society Becomes The Great Lakes Entomological Society, John Douglass, Robert Haack

The Great Lakes Entomologist

Michigan Entomological Society Becomes the Great Lakes Entomological Society. An overview of the rational of the change and history of the society.

Cover Art For Tgle Vol. 58 Nos 1 & 2

The Great Lakes Entomologist

Cover Art for TGLE Vol. 58 Nos 1 & 2

Cover Pages For Tgle Vol. 58 Nos 1 & 2

The Great Lakes Entomologist

Cover Pages for TGLE Vol. 58 Nos 1 & 2

Full Issue For Tgle Vol. 58 Nos 1 & 2

The Great Lakes Entomologist

Full Issue for TGLE Vol. 58 Nos 1 & 2

Treatment Of Tics In Pediatric Patients With Neurodevelopmental Disorders, Faiza Ahmad

Research Colloquium

Background: The prevalence of chronic and transient tic disorders in children with neurodevelopmental delays is substantially higher than in the general pediatric population. Disorders including Tourette’s Syndrome, Chronic Persistent Motor Tic Disorder or Provisional Tic Disorder, can present challenges in treatment when comorbid neurodevelopmental disorders. Children with Autism Spectrum Disorder (ASD), Down’s Syndrome or other developmental delays may not be able to participate in first-line behavioral interventions like CBIT (Comprehensive Behavioral Intervention for Tics) therapy. Therefore, optimization of pharmacologic treatment is often necessary in this population, especially in the case of severe, refractory tics. Additionally, pharmacologic treatment can be …

From Venom To Medicine: Harnessing Animal Toxins For Drug Discovery, Christine Vega, Ying Jia

Research Colloquium

Background: Drug development research has long focused on synthesizing novel therapeutics while overlooking isolation from naturally available sources such as animal venoms. Recently, the discovery of the therapeutic effects of highly bioavailable animal venom caused the field of venom research to soar in popularity. Animal venom serves as a natural, sophisticated tool optimized over millions of years by evolution with the ability to bind to ion channels such as nAChRs, non-specific ligand-gated ion channels distributed throughout the human nervous system. However, purifying individual venom toxins from crude venom is challenging due to its availability. Therefore, synthesizing large quantities of venom …