Digital Commons Network^™

Investigating The Effect Of Nacl Stress In Raphanus Sativus, Allison Norton

Undergraduate Research

Presentation at the Arkansas INBRE Research Conference, November 7-8, 2025

Investigating The Effect Of Cacl2 Stress In Raphanus Sativus, Justin Contreras-Portillo, Stephanie N. Nelms, Kai Herring, Amanda Munoz, Gisel Cardenas, Grace Cogswell, Tatum Simms, Aniruddha Acharya

Undergraduate Research

Presented by Justin Contreras-Portillo at the Arkansas INBRE Conference on November 7-8, 2025.

Enhancing The Biopreservative Effect Of Non-Starter Lactic Acid Bacteria Using Soluble Fiber During Cheese Ripening, Rakesh Kaushik, Sanjeev Anand

Dairy Science and Food Science Faculty Publications: 2022 to Present

Cheddar cheese ripening creates favorable conditions for desired microbial changes but also allows survival and outgrowth of spores like Clostridium tyrobutyricum and Bacillus licheniformis, leading to late-blowing defects. In the first phase of the study, NSLAB dynamics were evaluated in the presence of spores, where pilot-scale cheeses (110 L) were produced in four treatments: control, T1 (BL), T2 (CT), and T3 (BL+CT), each inoculated at 2.0 Log10 CFU/mL with spores. Results showed that SLAB declined from 8.0 to 0.2 Log10 CFU/g, while NSLAB increased from 2.0 to 8.5 Log10 CFU/g by the third month and remained stable thereafter. Spore counts …

Variation In Cycling Exercise Mechanical Efficiency In The Heritage Family Study, Angelo Tremblay, Claude Bouchard, Mark A. Sarzynski Facsm, James S. Skinner, Élisa Marin-Couture, Patrick Schrauwen, Guy Thibault, Marie-Eve Mathieu, Louis Pérusse

Faculty Publications

The objectives of the study were to assess the effects of cycling endurance exercise training and sex on cycling exercise mechanical efficiency (ME) and to explore its associations with body composition, glycemic profile, and skeletal muscle characteristics. Subjects were males (n = 371) and females (n = 465) of European (ED) and African descent (AD) of the HERITAGE Family Study. The measurements were repeated after a 20-week controlled endurance exercise program. A substudy involving 78 participants from 19 ED families was used to evaluate associations between skeletal muscle traits and variations in ME. An increase in ME of …

Impact Of Lignin Content On Decomposition Rates, Lindsey Powell, Olivia Fawkes, Moses Elijah Cadawas, Isaac Paul Dent, Darlene Panvini

Science University Research Symposium (SURS)

This study aimed to analyze decomposition rates of plants containing different amounts of lignin. Lignin can be found within cell wall structures in plants and aids in natural rigidity. Opuntia humifusa was chosen to represent plants with high levels of lignin, and Allium schoenoprasum was chosen in contrast because of its significantly lower levels of lignin. Due to these characteristics, A. schoenoprasum is hypothesized to decompose at a quicker rate than O. humifusa. To test this hypothesis, eight samples of O. humifusa and eight samples of A. schoenoprasum were placed in litter bags to prevent macroorganisms from aiding in …

Single-Fibril Förster Resonance Energy Transfer Imaging And Deep Learning Reveal Concentration Dependence Of Amyloid Β 42 Aggregation Pathways, Sara Sohail, J. Yoo, H. S. Chung

Chemistry & Biochemistry Faculty Works

Amyloid fibril formation is a highly heterogeneous process as evidenced by polymorphism in fibril structure. It has been suggested that different polymorphs are associated with different diseases or disease subtypes. Detailed characterization of this heterogeneity is a key to understanding the aggregation mechanism and, possibly, the disease mechanism. In this work, we develop Förster resonance energy transfer (FRET) imaging of amyloid fibril formation in real time and investigate the concentration-dependent heterogeneous fibril formation of amyloid β 42 (Aβ42). We incubated a mixture of unlabeled and labeled (5% donor and 5% acceptor) Aβ42, followed aggregation, and characterized individual fibrils in terms …

Fisheries Research Report No. 357: Recreational Fishing For Marron In South-West Western Australia In 2025 - Estimates Of Participation, Effort And Catch, Claire B. Smallwood, Karina L. Ryan, Eva Lai

Fisheries Research Reports

The smooth marron (Cherax cainii) (‘marron’) is endemic to freshwater dams and rivers of south-west Western Australia. Marron are managed as a single stock within the South-West Recreational Freshwater Resource and are highly vulnerable to over-exploitation due to the biological characteristics of the species (e.g., low fecundity, localised populations) as well as environmental (e.g., habitat loss, reduction in rainfall) and human (e.g., fishing, land clearing) pressures on freshwater ecosystems.

Due to this vulnerability, this species has been the focus of research, monitoring and management since the 1970’s. Since 2000, annual phone-recall (2000 – 2021) and online-recall (2022 – 2025) surveys …

A Comprehensive Overview Of Chronic Wound Infections And Current Treatment Methods, Sarah Fakher, David J. Westenberg

Biological Sciences Faculty Research & Creative Works

Chronic wound infections pose significant healthcare challenges due to persistent biofilms, antibiotic resistance, and impaired healing pathways. These wounds are characterized by prolonged inflammation, microbial colonization, and disrupted tissue regeneration, leading to substantial morbidity and healthcare costs. This article reviews current knowledge on chronic wound types, their pathophysiology, and the mechanisms underlying biofilm formation to examine the latest advancements in antimicrobial-based strategies aimed at addressing these challenges. It highlights how diverse materials and technologies have been engineered to improve infection management, enhance tissue regeneration, and overcome the limitations of traditional treatments as well as advances that leverage innovations such as …

Reliability Of Vertical Jump Force-Time Metrics In Collegiate Athletes Compared To Recreationally Active Individuals, Dimitrije Cabarkapa, Robert Smith, Luke Chowning, Tyler Neltner, Quincy R. Johnson, Yang Yang, Thayne A. Munce

Faculty Scholarship

As neuromuscular performance assessment has become a fundamental component of athlete monitoring, ensuring strong measurement reliability is essential for supporting accurate data-driven decision-making. Thus, the purpose of this study was twofold: (i) to examine the reliability of countermovement vertical jump (CMJ) force-time metrics obtained using a portable force plate system (Hawkin Dynamics) and (ii) to determine whether absolute and relative reliability scores differ between well-trained individuals (i.e., athletes) and those less familiar with CMJ force-plate testing (i.e., non-athletes). Seventy-four participants volunteered to take part in this investigation, of whom thirty-nine were NCAA Division-I baseball and track-and-field athletes and thirty-five age-matched …

Klf1 Coordinates Specialized Transcriptional Networks Required To Maintain The Integrity Of Terminal Erythropoiesis, Merlin N. Gnanapragasam, Peng Jiiang, Anita R. Dhara, Parina N. Patel, Mahesh Ramamoorthy, Roberta B. Nowak, Velia M. Fowler, James J. Bieker

Biological, Geological, and Environmental Faculty Publications

Kru ppel-like factor 1 [KLF1; also known as erythroid Kru ppel-like factor (EKLF)] is a C2H2 zinc finger transcription factor that plays a crucial role in all aspects of erythropoiesis. Mutations in KLF1 lead to diverse phenotypes ranging from mild to severe anemias. Individuals with a (CDA) type IV] exhibit impaired erythroid terminal differentiation and increased presence of binucleate erythroblasts. We have previously shown that KLF1 is necessary for cell cycle exit and enucleation in mouse primary cells. In the present study, we discovered that genes involved in cell motility, cell division and mitotic pathways are all directly regulated by …

The Micro-Communities Of Trees, Nicholas Davis, Lily Boysworth, Westen Wilburn

Fall Showcase for Research and Creative Inquiry

This study investigated how tree species diversity influences the variety of organisms living on or around trees across different habitat types. Field data were collected through random tree selection, measurement of tree diameter, identification of species, and estimation of surrounding ground cover types such as grass, herbaceous plants, woody plants, and leaf litter. Biodiversity associated with each tree was analyzed using the Shannon Diversity Index across several ecosystems, including grassland, woodland, and pond environments. Results indicated that the pond ecosystem exhibited the highest species diversity, followed by woodlands and then forests. A range of organisms, including lichens, mites, fungi, and …

Dusky Grouse Seasonal Resource Selection In The Great Basin Isolated Mountain Ranges Of Nevada, Usa, Stephanie Landry, Brian Smith, Erica Stuber, Shawn Espinosa, David Dahlgren

Aspen Bibliography

Dusky grouse Dendragapus obscurus are a montane forest grouse species with a paucity of information regarding their temporal and spatial resource use during critical times of high mortality and reproductive output. This lack of vital data may leave dusky grouse at risk of sub-optimal management in many areas of their distribution, especially in the isolated ‘sky island’ mountain ranges of the Great Basin, where high elevation habitats are surrounded by sagebrush and salt desert shrub land flats. Many of these high elevation habitats are being altered and lost rapidly from increasing disturbance events and effects of climate change. Our objective …

New Frontiers In Stand-Alone Digital Obesity Treatment, Delia West, Rebecca A. Krukowski

Faculty Publications

No abstract provided.

Phylogenetic Comparative Vocal Evolution, Casper W. Buchanan

Master's Theses

Vocal learning is a trait unique to humans, bats, cetaceans, primates, and birds (Jarvis & Nottebohm, 1997; McComb & Semple, 2005; Wilbrecht & Nottebohm, 2003). Although there has been extensive research on vocal learning in songbirds, parrots are an even closer proxy to human learning, as they are social, intelligent, and lifelong learners, with some having repertoires of over 300 sounds (Benedict et al., 2022; Péron et al., 2011; Thomsen et al., 2019; Toft & Wright, 2015). Elevated vocal learning can be attributed to the need for parrots to have strong communication skills through the sharing of information over foraging, …

Stump The Professor: A Classroom Game To Model Metacognition And Normalize Mistakes In Biology Education, Khayriyyah Mohd Hanafiah, Jonathan I. Millen

Biology Faculty/Staff Publications

Autonomy, competence, and relatedness are key elements under the self-determination theory (SDT) for student motivation in learning. Stump the Professor (STP) is a low-prep activity designed to model metacognition, normalize the experience of being incorrect, and encourage student participation in undergraduate biology classrooms. By empowering students to generate their own questions, STP promotes autonomy and gives students agency to shape classroom dialog. Observing the instructor verbally reason through uncertainty highlights strategies of problem-solving which model metacognition and competence. Normalizing mistakes within a supportive, low-stakes environment fosters relatedness as students perceive the classroom as a collaborative and psychologically safe place. In …

Assessing The Effectiveness Of Extension Services On Aquaculture Development In Ashanti Region, Ghana, Bismark Essel

World Maritime University Dissertations

No abstract provided.

Evaluating The Fisheries Observer Program Of Guyana’S Seabob Trawl Fishery : Insights Into Scientific Aspects And Onboard Working Conditions, Kadesha Shawyana Nedd

World Maritime University Dissertations

No abstract provided.

Micronuclei As A Marker Of Genotoxicity In An Urban Songbird., Elise Mittlestat

College of Arts & Sciences Senior Theses

A rise in industry and vehicle emissions in the last 20 years has led to an increase in exposure to air pollution. Air pollution has been identified as a major threat to both human and animal health and it has been linked to elevated oxidative stress. One of the most severe consequences of oxidative stress is genotoxic damage. Birds have been identified as promising sentinels for human health, but the effects of air pollution on genotoxicity in birds is understudied. In this study, I evaluated the association between air pollution and markers of genotoxicity in American Robins (Turdus migratorius) to …

Odor Concentration Matters: How Odor Concentration Guides Consummatory Behavior And Formation Of Odor-Taste Associations In Rats, Dinna N. Ferreira

College of Arts & Sciences Senior Theses

Taste concentration is a key determinant of palatability. For example, higher concentrations of sucrose, a sweet taste, are typically preferred to lower ones, whereas the opposite is true for citric acid, a sour taste. Yet taste is not the only determinant of food preference. Flavor arises from the integration of taste and olfactory cues, and repeated exposure to odor-taste combinations can lead odors to acquire the hedonic value of their associated taste. However, the contribution of odor concentration, independent of taste, in guiding consummatory behavior is not well understood.

To address this, we conducted two experiments using a two-bottle brief-access …

Investigating The Effect Of Kcl Stress In Raphanus Sativus, Stephanie N. Nelms, Mason Oelke, Luke Cantu, Amanda Munoz, Gisel Cardenas, Grace Cogswell, Tatum Simms, Aniruddha Acharya

Undergraduate Research

Presented by Stephanie Nelms at the Arkansas INBRE Conference on November 7-8, 2025.

Consumers Stabilize Grassland Ecosystem Functions By Destabilizing Belowground Communities Under Abiotic Stress, Jane M. Lucas, Michelle L. Budny, Nathan P. Lemoine

Biological Sciences Faculty Research and Publications

Consumers play a critical role in mediating plant and ecosystem responses to abiotic stress, yet their influence on belowground processes under changing environmental conditions remains underexplored. Insect consumers are vital components of grassland ecosystems that can shape ecosystem function and stability by mitigating how plant and microbial communities respond to abiotic stress, like drought. This study investigates how small-bodied consumers influence the magnitude and stability of grassland belowground functions across gradients of abiotic stress. We conducted a fully factorial field experiment manipulating consumer presence and induced drought over a growing season. Our results reveal that the presence of consumers stabilizes …

Fisheries Research Report No. 355: Recreational Fishing For Western Rock Lobster In 2024/25: Estimates Of Participation, Effort And Catch, Claire B. Smallwood, Karina L. Ryan, Alissa Tate

Fisheries Research Reports

The Western Rock Lobster (WRL) (Panulirus cygnus) is the most commonly caught Rock Lobster (RL) species in Australia. Catches from the commercial and recreational sectors are required to determine and monitor Total Allowable Commercial Catch (TACC), Total Allowable Recreational Catch (TARC) and the proportion of Allowable Harvest Level (AHL) achieved. The TARC is evaluated annually based on a 5-year average.

Data for the recreational sector are obtained using phone-recall surveys to provide annual estimates of participation, fishing effort and retained catch (by numbers) from recreational fishers who hold a RL licence. Average weight, obtained from boat ramp surveys, are used …

Living Shoreline Prioritization And Hydrodynamic Habitat Suitability Models For Restoration In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_shorelinemodel_IRL_LWL.shp, was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon and Lake Worth Lagoon.

The dataset presented herein includes:

1. shoreline data from >15,000 transects collected in the field,
2. shoreline wave climate data created through hydrodynamic modeling and frequency analysis of historic data,
3. categorization of potential risk for shoreline boat wake impact,
4. persistence of seagrass within 210 m of the shoreline, …

Age- And Step-Length-Dependent Alterations In Muscle Synergies And Joint Coordination During Unexpected Gait Termination, Woohyoung Jeon, Ashley Dalby, Xuanliang Neil Dong, Melinda Hermanns

Health & Kinesiology Faculty Publications and Presentations

Background: Falls in older adults often occur during unexpected gait termination, when rapid deceleration is required. Age-related declines in strength, proprioception, and coordination impair efficient distal-to-proximal braking, raising fall risk. Variable step lengths, ranging from “normal” steps to larger “big” steps used when hurrying, better reflect real-world walking demands and pose greater mechanical and neuromuscular challenges. This study investigated how age and step length affect muscle synergy complexity and joint coordination during unexpected gait stops.

Methods: Twelve healthy younger and twelve healthy older adults performed normal- and big-step stops in response to random visual cues during walking. Surface EMG from …

Biosecurity Council Of Western Australia Annual Report 2024-25, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

Established in 2008, the Biosecurity Council of Western Australia (Council) is a specialist advisory group to the Minister for Agriculture and Food (Minister), the Hon Jackie Jarvis MLC and Director General (DG) of Department of Primary Industries and Regional Development (DPIRD).

The Council operates at a strategic level, with a long-term vision for effective biosecurity in Western Australia (WA) for the protection of WA’s environment, agriculture and aquaculture industries, social amenity, and economic development.

Matters the Council may provide advice on include, but are not limited to:

• the requirements of a comprehensive and effective biosecurity system for WA

• …

Biophysical Processes Of Morphogenesis In Lizard Lungs, Kaleb Hill, Aaron H. Griffing, Michael A. Palmer, Bezia Lemma, Aria S. Lupo, Tony Gamble, Natalia A. Shylo, Andrej Kosmrlj, Paul A. Trainor, Celeste M. Nelson

Biological Sciences Faculty Research and Publications

Background

The lungs of squamate reptiles (lizards and snakes) are highly diverse, exhibiting single chambers, multiple chambers, transitional forms with two to three chambers, along with a suite of other anatomical features, including finger-like epithelial projections into the body cavity known as diverticulae. During embryonic development of the simple, sac-like lungs of anoles, the epithelium is pushed through the openings of a pulmonary smooth muscle mesh by the forces of luminal fluid pressure. This process of stress ball morphogenesis generates the faveolar epithelium typical of squamate lungs.

Results

Here, we compared embryonic lung development in brown anoles, leopard geckos, and …

Small For Gestational Age Subgroups Have Differential Morbidity, Growth, And Neurodevelopment At Age 2: The Interbio-21st Newborn Study, Aris T. Papageorghiou, María C. Restrepo-Ménde, Rose Mcgready, Fernando C. Barros, Francois Nosten, Shama Munim, Roseline Ochieng, Rachel Craik, Hellen C. Barsosio, Zulfiqar Ahmed Bhutta

Department of Obstetrics & Gynaecology

Background: Small for gestational age is a complex perinatal syndrome associated with increased neonatal morbidity, mortality, and impaired childhood growth and neurodevelopment. Current classifications rely primarily on birthweight, which does not capture the heterogeneity of the condition nor predict long-term health outcomes. Here we aim to identify and characterize distinct small for gestational age subgroups and assess their neonatal and early childhood health trajectories.
Objective: To refine the classification of small for gestational age by identifying subgroups based on maternal, fetal, and environmental factors and evaluating their associations with neonatal morbidity, growth, and neurodevelopment at age 2.
Study design: Prospective …

3d Printed Microscopes As A Low-Cost Alternative To Conventional Light Microscopes, Aidan W. Donelan, Hunter N. Lemer, Sudeshna Roy, Nicholas C. Butzin

iLEARN Teaching Resources

Many K-12 schools function on limited budgets in their science departments, making it difficult to acquire, maintain, and update microscopes. While modern light microscopes are often complex, expensive, and require specialized training, they are based on simple principles of light. Microscopes enable us to observe objects too small for the naked eye and reveal intricate details. Introducing affordable, easy-to-use microscope adaptations early in education helps foster a deeper understanding of science and encourages young students to pursue STEM fields. Using 3D printing, we developed two innovative microscope models and two lesson plans. Lesson 1: Using a smartphone microscope to visualize …

Effects Of Neurocognitive Multitask Activities On A Novel Lower Extremity Functional Performance Test, Sidney M. Stoddard, Logan Hill, Bryan L. Riemann, George J. Davies

Physical Therapy Faculty Publications

Objective: To examine the effects of incorporating (1) a neurocognitive reactive component and (2) a neurocognitive multitask component on performance degradation of a single-limb hop functional performance test.

Design: Randomized within-subject design of 32 healthy young adults.

Methods: Participants performed 3 randomly assigned variations of the single-limb T-Drill Hop Test (TDHT). The time to complete each test was recorded. The reactive TDHT (R-TDHT) consisted of the TDHT with a flashing light, indicating the "T" intersection hop direction. The neurocognitive reactive-recall TDHT (RR-TDHT) incorporated the R-TDHT and required participants to observe 5 flashing light colors. Participants then recalled the colors in …

Hand Swelling And Other Non-Raynaud Phenomenon Symptoms As The Initial Presentation Of Systemic Sclerosis: Prevalence And Clinical Associations In Two Us Cohorts, Iqtidar Hanif, Shervin Assassi, Maureen D Mayes, Zsuzsanna H Mcmahan, Meng Zhang, Julio Charles, John M Vanburen, Jessica S Alvey, Kimia Ghaffari, Elana J Bernstein, Flavia V Castelino, Lorinda Chung, Luke Evnin, Tracy M Frech, Jessica K Gordon, Faye N Hant, Laura K Hummers, Dinesh Khanna, Kimberly S Lakin, Dorota Lebiedz-Odrobina, Yiming Luo, Ashima Makol, Jerry A Molitor, Duncan F Moore, Carrie Richardson, Nora Sandorfi, Ami A Shah, Ankoor Shah, Victoria K Shanmugam, Virginia D Steen, Elizabeth R Volkmann, Carleigh Zahn, Brian Skaug

Faculty, Staff and Student Publications

Objective: Raynaud phenomenon (RP) is often the initial clinical manifestation of systemic sclerosis (SSc), but some patients develop other manifestations first. To help elucidate the diversity of SSc presentation in its early stages, we describe the initial clinical manifestations and antinuclear antibody (ANA) profiles of patients in two early SSc cohorts.

Methods: All patient data in the Genetics vs Environment in Scleroderma Outcomes Study (GENISOS) and Collaborative National Quality and Efficacy Registry (CONQUER) cohorts were reviewed. Both studies enrolled patients within five years of the first non-RP symptom.

Results: In GENISOS and CONQUER, respectively, 194 (44.2%) of 439 and 292 …