Digital Commons Network^™

A Vascular And Non-Vascular Flora Of The Mcgee Creek Watershed, Mono County, California, Matthew Yamamoto

CGU Theses & Dissertations

The McGee Creek watershed is a topographically and geologically diverse drainage in the eastern Sierra Nevada of California covering 27.28 sq-mi (70.65 sq-km), with an elevation range of 6750–12,999 ft (2057–3962 m). Relative to nearby watersheds, few plant specimens had been collected in the McGee Creek watershed before 2024, and these were mostly collected along roads and trails. To better understand the flora, 2860 collections of vascular and non-vascular plants were made across the watershed in 2024 and 2025, and 187 specimens collected before 2024 were examined. In total, the flora of the McGee Creek watershed includes at least 970 …

Beyond Ssris: Omega-3 Fatty Acids And The Neurobiology Of Impulsivity In Borderline Personality Disorder, Sujean Doo

Scripps Senior Theses

Impulsivity is a central and clinically significant dimension of Borderline Personality Disorder (BPD), and is strongly associated with self-harm, aggression, and suicide risk. Despite its prognostic importance, pharmacologic management of impulsivity in BPD remains inconsistent. Selective serotonin reuptake inhibitors (SSRIs) are frequently prescribed; however, randomized controlled trials demonstrate limited efficacy for impulsive-aggression, and some patients experience a paradoxical behavioral activation. Meta-analytic and systematic reviews further suggest that mood stabilizers and second-generation antipsychotics may outperform antidepressants, yet no specific medication is indicated to target impulsive behavioral dyscontrol.

This thesis synthesizes findings from systematic reviews, randomized trials, and neuroimaging research to evaluate …

The Effect Of Sleep Environment On Sleep Quality And Behavior In Firefighters: A Cross-Sectional Study, Jacquelyn N. Zera, Erica Esper, Anna Peluso Simonson, Ashley N. Clausen, Serena Paterno

2026 Faculty Bibliography

Firefighters face high-stress occupational demands and irregular shift work that negatively impact sleep quality, which is intrinsically linked to long-term physical and psychological health. This cross-sectional study examines how the physical sleep environment (home vs. work) and station sleeping arrangements (bunk-style vs. individual dorm-style quarters) influence subjective sleep quality in this population. Sixty-six career firefighters (Age = 40.89 ± 11.05 years), completed the Pittsburgh Sleep Quality Index (PSQI) to assess their sleep in both home and fire station environments, with data analyzed using Wilcoxon Signed Ranks and Mann–Whitney U tests. The results reveal significant differences (p < 0.001), with sleep duration, efficiency, subjective quality, and global PSQI scores all performing significantly better at home than at work. Notably, no significant differences were found between bunk-style and dorm-style sleeping quarters at the station. These findings suggest that firefighters experience poorer sleep while on duty regardless of room design, indicating that operational stressors like call volume and nocturnal arousal may be more influential on sleep quality than the physical arrangement of sleeping quarters, and could inform organizational policies and wellness programs aimed at reducing occupational fatigue.

Dietary Intake And Predictors Of Healthy Eating In Midwestern American College Students: An Observational Study †, Anna Peluso Simonson, Jacquelyn N. Zera, Gregory S. Farnell

2026 Faculty Bibliography

College students often maintain poor dietary habits, notably low fruit and vegetable intake. Commonbarriers include limited time, cost, and lack of nutritional knowledge. This study examined dietary behaviors, barriers, and factors influencing Healthy Eating Scores (HES) amongcollege students. Participants (N = 224; age = 20.3 ± 2.5 years, BMI = 23.9 ± 4.1 kg/m2, 78.9% female, and 91.3% white) completed an online survey. Results indicate meat overconsumption with underconsumption of water, fruits, and vegetables. Limited time and healthy options were the primary perceived barriers. Tests of between-subject effects identified gender (F = 4.38, p = 0.04) and living situation (F …

A Field Test Of The Role Of Biofluorescence In Territorial Salamanders, Kasey Watterson, Cari-Ann M. Hickerson, Carl Anthony

2026 Faculty Bibliography

Biofluorescence is recognized as an important form of visual communication, yet its function remains largely untested in many terrestrial species. In Eastern Red-Backed Salamanders (Plethodon cinereus), fluorescence of the postcloacal gland is a sexually dimorphic trait most strongly expressed in males. Because fluorescence can be displayed during territorial contests, we hypothesized that fluorescence in male P. cinereus would be positively related to resource holding potential (RHP) of territorial residents in the field. To test this hypothesis, we examined the relationship between fluorescence and two separate variables: body condition (as a proxy for RHP) and territory quality (the expected payoff from …

Climate Change And Species Interactions Jointly Shape Migration Timing And Growth At A Critical Ontogenetic Transition In Juvenile Sockeye Salmon, Margaret E. Veatch

Honors Theses

Climate change is shifting the timing of biological events globally, but the mechanisms linking environmental variation to phenological changes are poorly understood in many systems, particularly those where individuals undergo ontogenetic habitat shifts. Here, I examined the join influence of climate-driven environmental variability and species interactions migration timing and body size at migration in juvenile sockeye salmon (Oncorhynchus nerka) in Lake Aleknagik, Alaska, using a multi-decadal dataset (1967–2024). Migration timing varied widely among years and was best explained by a combination of ice-out phenology, epilimnetic temperature, and fish densities in littoral habitats. Juvenile sockeye salmon migrated earlier in …

The Effect Of Second-Order Slip In Hydromagnetic Eyring-Powell Flow: A Bvp4c Study, Ch. Maheswari, B. Naga Lakshmi, G. Dharmaiah, R. Mohana Ramana, B. Reddappa

Mansoura Engineering Journal

The steady-state Eyring–Powell boundary layer fluid flow past a moving surface is examined, considering various parameter implications. These include the wall mass transfer parameter (0.5  C   2.0), the magnetic field parameter (5  Mn 20), the velocity ratio parameter (0.1  λ1  0.7), Eyring-Powell fluid parameters (0.5 K 2 & 0.1 E 0.4), as well as the first-order velocity slip (0.1 γ 1.1) and second-order velocity slip (0.1 δ  0.4). By employing appropriate similarity transformations, the PDEs are reduced to a set of non-linear ODEs, which are subsequently solved using the bvp4c numerical technique and, an implication of key factors on shear …

A Hybrid Object Detection And Temporal Attention Framework For Intelligent Video Surveillance, Sudheer Reddy Bandi, Eswari Vanaparthi, Yakshini Edapalli, Roshan Kavuri

Mansoura Engineering Journal

The rapid growth of urban areas has greatly heightened the need for smart video surveillance systems that can automatically process extensive amounts of CCTV footage. Traditional surveillance methods largely depend on human monitoring, which is not only inefficient but also susceptible to human mistakes, especially in intricate and crowded environments. To tackle these issues, this paper introduces a combined object detection and temporal attention for intelligent video surveillance that concurrently analyzes spatial and temporal data from video streams. The proposed system analyzes real-time CCTV footage utilising a multi-pathway frame extraction technique that includes slow, fast, and full-frame sampling to capture …

A Thymine Dimer Stalls A High-Fidelity Dna Polymerase By Providing No Template Information In The Same Manner As An Abasic Site, Amanda R. Walsh, Hye Rhee Kim, Lorena S. Beese, Eugene Y. Wu

Biology Faculty Publications

Cyclobutane pyrimidine dimers are photolesions that form when UV-B irradiation causes adjacent thymine or cytosine bases to covalently bond and can arrest DNA synthesis by replicative polymerases. To gain insight into the effects of cis-syn cyclobutane thymine dimers (T=T) on DNA replication in a model polymerase, we conducted solution and crystallographic studies of the Bacillus DNA polymerase I large fragment (BF) in complex with a T=T-containing template and an incoming dNTP. A thymine dimer lesion blocked nucleotide addition by BF in solution. The crystal structure of the BF-T=T-dATP complex indicated that the thymine dimer is too large to enter the …

Long-Term Compositional Shifts In The Fish Community Of The Wabash River, Olivia R. Wertman

Masters Theses

There is concern about declining biodiversity in the world today and an increasing need to monitor biodiversity through collecting data and gauging changes occurring in biodiversity over time. Large river fish communities are one area of particular interest due to their sensitivity to environmental changes. One program seeking to address this is the Long-Term Survey and Assessment of Large River Fishes, LTEF, which monitors fish populations in the large rivers of Illinois. In this study, I assessed changes in the fish community of the lower 322 km of the Wabash River from 2010-2025 using annual direct current boat electrofishing surveys …

Precision Metagenomics Reveals Microbial Landscape In Acute Upper Respiratory Infections: A Comprehensive Dataset, Sadia Almas, Rob E. Carpenter, Vaibhav K. Tamrakar, Anuradha Singh, Aditya Sharma, Rahul Sharma

Human Resource Development Faculty Publications and Presentations

Objectives The comprehension of the microbial composition in upper respiratory tract infections is pivotal for the progression of diagnostic and treatment methodologies. This article presents a dataset derived from Precision Metagenomic next-generation sequencing using hybridization capture-based targeted sequencing. Nasopharyngeal samples from 24 patients with acute URIs were analyzed using the Illumina®/IDbyDNA Respiratory Pathogen ID/ AMR panel. The dataset contains a wealth of information on the composition of the microbiota, including the relative abundance of known pathogens and their potential clinical significance. Data description This dataset serves as a valuable asset for future research in respiratory medicine, infectious disease epidemiology, antimicrobial …

Testing The Influence Of Increased Predation On The Evolution Of Morphological Coloration Plasticity In Trinidadian Killifish (Anablepsoides Hartii), Alyssa M. Laux

Biology Theses

The ability to camouflage is a widespread trait in both vertebrates and invertebrates that enhances survival in risky environments. The ability of organisms to respond to shifts in environmental conditions and change color is a conspicuous example of camouflage. Such coloration plasticity can occur rapidly (seconds to minutes) versus longer periods of time (days to months). There are numerous examples of physiological coloration plasticity (short-term) and morphological coloration plasticity (long-term). Yet, there are few tests of the conditions that drive the evolution of physiological vs. morphological coloration plasticity. In this study we use Trinidadian killifish (Anablepsoides hartii) as …

Mechanical Property Evaluation Of Paper Die Materials In Explosive Forming, Higa Yoshikazu, Kadena Hisashi, Shimojima Ken, Iyama Hirofumi

ASEAN Journal on Science and Technology for Development

This study investigates the feasibility of using paper materials as substitutes for molds in explosive forming by systematically evaluating their mechanical properties. Tensile tests were conducted on three paper types differing in thickness and internal fiber structure, using a custom-designed gripping tool. Specimens were prepared in multiple orientations to account for anisotropic behavior. Results indicate that coated paper, exhibiting the highest specific tensile strength and energy absorption per unit basis weight, is the most suitable for formability. In contrast, thick paper, characterized by the lowest specific tensile energy absorption, offers the best dimensional accuracy. Anisotropy was observed in matte and …

Soil Respiration Drivers And Challenges In A Changing Environment, Olivia Rae Haas

Theses, Dissertations and Culminating Projects

This study aims to understand post agricultural forested soils (sandy loam, silt loam, and loam) and the influences that drive carbon sequestration and soil respiration flux. Duke Farms in Hillsborough NJ, has historically been utilized as an agricultural zone for farming a variety of crops. Currently the area is protected with a focus on environmental conservation and restoration of the land. This includes getting a better understanding of the forested portions of the property. Understanding the quality of forested areas is vital as they have the potential to act as a carbon sink which can mitigate the effects of climate …

Effect Of Mid-Range Ultraviolet Light On Avian Embryonic Development, Keelie Hughes

Biology Theses

While it is a known fact that specific environmental conditions must be met to ensure proper embryonic development, the impact of changes in this delicate balance is unclear. Ultraviolet (UV) light has a narrow range of effectiveness in mature tissue, where too little can hinder molecular signaling and too much can cause damage to genetic material. This study exposed in ovo chicken embryos in the preliminary stages of development to mid-range UV radiation to examine developing embryo and tissue morphology using anthropometric methods and comparing proliferative cells among embryos exposed to varying doses of UV light. Additionally, quantitative polymerase chain …

A Machine Learning–Based Framework For Traffic Classification And Threshold-Based Load Management In 5g Network Slicing, Safi Ibrahim, Younis S. Younis, Kamal S. Hamza, Mohamed M. Ashour

Mansoura Engineering Journal

This study proposes a machine learning–based framework that applies machine learning techniques to improve the efficiency of 5G network slicing through automated traffic classification and threshold-based load management . The proposed model optimizes resource allocation among the three standardized 5G slice types: enhanced Mobile Broadband (eMBB), ultra-Reliable Low-Latency Communication (URLLC), and massive Machine-Type Communication (mMTC). Two supervised learning algorithms—K-Nearest Neighbors (KNN) and Support Vector Machine (SVM)—are trained using Quality of Service (QoS) parameters such as packet delay, loss rate, and Quality Class Identifier (QCI). Experimental evaluations were conducted on two large-scale datasets containing over 400,000 traffic instances, demonstrating that the …

A Hybrid Geoid Model For The Perlis Region, Malaysia Based On Cadastral Reference Marks And A Geometric Approach, Muhammad Aiman Haiqal Abdul Malek, Muhammad Faiz Pa’Suya, Ramazan Alpay Abbak, Ami Hassan Md Din, Noorfatekah Talib

Mansoura Engineering Journal

This study presents the development of a high-resolution local geoid model for the Perlis region, Malaysia, using a geometric approach that integrates GNSS-levelling benchmarks with Cadastral Reference Mark (CRM) data. A total of 38 GNSS-levelling benchmarks were used as reference points, while 3,725 CRMs were incorporated to significantly enhance spatial coverage for geoid modelling. Orthometric heights at the CRM points were first determined by transferring heights from the reference benchmarks using gravimetric geoid information. Subsequently, geometric geoid heights were computed from the differences between ellipsoidal and orthometric heights. Five interpolation techniques were evaluated to generate the geometric geoid surface, namely …

Reliability-Oriented Spatiotemporal Machine Learning For High-Impact Power Outage Event Prediction, Marwa Gamal

Mansoura Engineering Journal

Power outages have become an increasing concern for modern power systems due to their impact on infrastructure reliability, economic activities, and public safety. The growing frequency of extreme weather events and the rising demand for electricity have made it more difficult to anticipate high-impact outage events. One of the main challenges in this context is the complex interaction between temporal patterns and geographic variations, which traditional methods often fail to capture effectively. This study develops a machine learning framework that combines temporal characteristics with geographic information to improve the prediction of high-impact power outages. Temporal features such as seasonal patterns, …

Optimal Design Of Concrete Canal Section For Minimizing Overall Costs Using Artificial Ecosystem Optimization, Aya M. Elkhouly, Hamdy A. El-Ghandour, Tharwat Sarhan, Mahmoud E. Abd-Elmaboud

Mansoura Engineering Journal

The optimal design of concrete-lined canals represents a critical challenge in hydraulic engineering, requiring simultaneous minimization of construction and operational costs while satisfying hydraulic performance constraints. This study presents a novel optimization framework that utilizes the Artificial Ecosystem-based Optimization (AEO) algorithm for determining optimal canal cross-sectional dimensions. The proposed methodology comprehensively considers excavation costs, lining expenses, and water losses due to seepage and evaporation while ensuring hydraulic efficiency through velocity and Froude number constraints. The AEO algorithm mimics natural ecosystem processes through production, consumption, and decomposition phases to efficiently explore the design space and converge to global optima. The framework …

Design And Fabrication Of A Scaled Automated Dairy Farm Model: A Report, Md Towfiqur Rahman

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Summary

This study investigates how ventilation systems work in dairy barns and builds a scaled model to support education and research. The project is designed to help students from the University of Nebraska–Lincoln (UNL), K-12 learners, and researchers in animal science, veterinary medicine, and engineering gain visual experience with dairy facility components and processes. Different ventilation methods were studied, leading to the design of a 1/64-scale tunnel-ventilated dairy barn meant for 60 Holstein Friesian cows. Barn dimensions were set based on real Holstein cow measurements to ensure proper cow comfort, while airflow requirements were calculated and scaled down. Miniature fans …

Soil Nutrient Sufficiency Versus Plant Nutrient Status In Compost-Amended Soils: Plant Tissue Analysis As A Diagnostic Tool, Chandralekha Joga Miss

Murray State Theses and Dissertations

This study evaluated whether Mehlich III soil nutrient sufficiency ratings reliably predict plant nutrient status and chlorophyll response across contrasting compost application histories. A greenhouse pot experiment was conducted with Chijimisai (Brassica rapa) planted in three treatment soils that had no compost (T1), moderate compost history (T2), and long-term hog manure compost application (T3). Plant performance was assessed through weekly shoot length and chlorophyll content (SPAD) measurements, leaf number at maturity, and leaf tissue nutrient analysis conducted at harvest. Soil test results indicated adequate to high nutrient levels across all three treatments. Leaf tissue analysis, however, revealed substantial …

An Analysis Of Systemic And Contact Herbicide Usage Trends In Illinois Corn Production Systems, Paige E. Mckittrick

Murray State Theses and Dissertations

Herbicide use is central to weed management in Illinois corn production; however, long-term changes in the balance between systemic and contact herbicides have not been well quantified at the statewide scale. This study analyzes herbicide trends in Illinois corn from 1982 to 2016 using secondary data from the USDA Agricultural Chemical Use Survey, paired with climate, regulatory, and herbicide resistance information. Herbicide active ingredients were classified into systemic and contact functional categories and grouped according to Weed Science Society of America (WSSA) mode-of-action (MOA) codes. For each survey year, total herbicide load (lb a.i./acre), functional proportions, MOA-specific contributions, and a …

Mapping Coastal Vegetation To Evaluate Salt Marsh Decline From 2016 To 2025 In South Carolina, Usa, Zak Henry Bartholomew

Theses, Dissertations and Capstones

Accelerating sea-level rise and storm surge events pose a substantial threat to salt marsh ecosystems, which provide critical ecosystem services. Classification and mapping of coastal vegetation through remote sensing can identify marsh dieback events and provide spatial context for patterns of marsh vulnerability. We used a multi-sensor approach that incorporated LiDAR data, multispectral imagery, and field-derived cover estimates to classify Spartina alterniflora (smooth cordgrass) dominated marsh types on Marine Corps Recruit Depot Parris Island (MCRDPI), a sea island in South Carolina, USA. In summer 2025, surveys were conducted within marsh classes to collect training and validation data. We used random …

Do Magnesium Ions Have Similar Effects As Calcium Ions On Resting Membrane Potential?, Anthony Hana, Youngwoo Kim, Joy Bidros, Katie Neglia, Robin L. Cooper

Biology Faculty Publications

Maintaining a membrane electrical potential of biological cells is a dynamic process, as some cells have a continually changing potential, like pacemaker cells, while other cells may function with large or small changes in the membrane potential. Additionally, some cells may change their electrical potential when stimulated or inhibited by electrical signals, chemical compounds, or both—either simultaneously or episodically. The persistent leak of K⁺ through two-pore-domain potassium channels (K2P) and of Na⁺ through Na⁺ leak channels (NALCNs) and the action of pumps and exchangers are primarily responsible for maintaining a resting potential. Ca²⁺ ions are known …

An Evolving View Of Lineage Diversification, Pascal O. Title, L. Francisco Henao-Díaz, Rosana Zenil-Ferguson, Thais Vasconcelos

Biology Faculty Publications

Systematists have long been fascinated by the astounding variation in species diversity across the various branches of the tree of life, a net result of the uneven rates at which lineages undergo speciation and extinction over time. The past 30 years have seen the development and widespread application of tools that allow diversification to be quantified and characterized in empirical data sets. These advances have, in turn, enabled the statistical evaluation of hypotheses about the causes behind the uneven distribution of species richness among lineages, leading to a more nuanced understanding of diversification rate variation, as reflected in an ever-expanding …

Exogenous Estradiol Does Not Regulate Daily Metabolic Rhythms Underlying Diet-Induced Obesity In Male Mice, W. Brad Osborne, Oliver Vöcking, Victoria Alvord, Oluwabukola Omotola, Yuriko Katsumata, Julie S. Pendergast

Biology Faculty Publications

Male mice fed high-fat diet become obese, but female mice are resistant to diet-induced weight gain. We previously found that circulating estradiol in females protects their daily rhythms from disruption by high-fat feeding to prevent diet-induced obesity. The goal of this study was to determine the effects of estradiol on daily metabolic rhythms in male mice. Male C57BL/6J mice were treated with estradiol and fed high-fat diet for 2 weeks. We measured the effects of high-fat diet feeding on daily rhythms of eating behavior and locomotor activity, and on the phases, or timing, of circadian rhythms in central and peripheral …

Drinking Microstructure Analysis Of Direct Controls Of Water Intake In Male And Female Rats, Bo W. Sortman, Emalie L. Mullane, Kennedy L. Lamb, Andrea A. Edwards, Ann-Marie Torregrossa, Derek Daniels, Jessica Santollo

Biology Faculty Publications

Measures of rodent drinking (lick) patterns are used to test how various manipulations affect fluid intake. Decades of research indicate that manipulating the satiating potency of a stimulus affects the number of licking bursts whereas manipulating the hedonic value of the solution affects the size of the licking bursts or rate of licking. This type of analysis has been largely applied to manipulations that modulate drinking that is already occurring (i.e., indirect controls or modulators of intake), but there is a dearth of studies with detailed measures of licking due to stimuli that are primary drivers of intake which happen …

Evolution Of A Novel Neuronal Sex-Specifically Spliced Gene In Mosquitoes, Yael Norohasimbola Tsitohay

Student Theses and Dissertations

Female mosquitoes from many species require a blood meal from an animal host as a protein source for egg development and successful reproduction. The majority of mosquito species are generalists in their host preference, feeding on a range of animals including mammals, birds, and amphibians. However, a small fraction of mosquito species have evolved a preference for human hosts. These species are mainly found in the genera Aedes, Culex, and Anopheles, and they have created a global health crisis due to their ability to transmit deadly human pathogens including dengue virus, Zika virus, West Nile Virus, and …

Reproductive Success Is Secured By A Rapidly-Evolving Short Peptide In Female Aedes Aegypti Mosquitoes, Priyanka Lakhiani

Student Theses and Dissertations

The mosquito lineage spans hundreds of millions of years of evolution, and this period has honed the yellow fever mosquito, Aedes aegypti, into a precise and expert predator. While nectar and plant-derived carbohydrates are sufficient sources of nutrition to maintain energy and metabolism, female mosquitoes must acquire multiple ingredients to successfully reproduce and produce offspring. Healthy, motile sperm from a conspecific male and a complete blood meal from a human host are required for females to develop viable eggs, and thus ensure species survival. What are the internal mechanisms that coordinate the acquisition of these key elements with the maturation, …

Ancient Immune Systems: Sensing And Signaling In Bacterial-Phage Conflict, Cameron Grace Roberts

Student Theses and Dissertations

Viruses are among the most significant selective pressures shaping the evolution of life on Earth. In the microbial world, bacteriophages (phage) are bacterial viruses and drive a continuous evolutionary arms race that has led to an extraordinary diversity of bacterial defense mechanisms [1]. These systems are thought to have provided the evolutionary foundation for numerous eukaryotic immune strategies [2]. Experimental studies have validated many of these anti-phage defense systems and revealed the mechanisms by which they disrupt phage infection [3]. Nonetheless, major gaps persist in our understanding of how bacterial immune systems recognize bacteriophage infection to trigger immunity. This dissertation …