Digital Commons Network^™

Seasonal Dynamics Of Biomass Productivity, Combustion Quality, And Nutrient Translocation In Bulbous Canary Grass (Phalaris Aquatica L.) In A Semiarid Mediterranean Environment, Recep İrfan Nazli, Mi̇hrab Polat, Asi̇ye Sena Çavdar, Veyi̇s Tansi

Turkish Journal of Agriculture and Forestry

In order to achieve sustainable biomass production from perennial grasses, seasonal changes in biomass yield, combustion quality, and nutrient translocation need to be monitored in detail. In this study, the effects of six distinct disruptive harvests (November, January, March, May, July, and September) on the dry biomass yield, ash, moisture, and mineral contents, as well as the composition of the cell walls and the translocation of nutrients in bulbous canary grass, were investigated in a semiarid Mediterranean climate. The September harvest significantly reduced aboveground ash and mineral contents, while their contents in belowground biomass exhibited a significantly increasing trend from …

From Ancient Wisdom To Modern Medicine: The Cultural And Therapeutic Significance Of Ficus Carica L. (Moraceae) Extracts In Colorectal Cancer Treatment, Esra Hacimüftüoğlu, Azizeh Shadidizaji, Kağan Tolga Ci̇ni̇sli̇, Songül Karakaya

Turkish Journal of Agriculture and Forestry

Figs, mentioned in the Torah, the Bible, and the Quran, are of historical and cultural significance and have been used for medical treatment, prompting extensive research. Colorectal cancer (CRC), the second leading cause of cancer-related death worldwide, is expected to significantly increase in terms of mortality rates by 2035, with its progression closely linked to inflammatory processes. Cyclooxygenase 2 (COX-2), an enzyme encoded by the Ptgs2 gene, plays a key role in these processes by converting arachidonic acid into prostaglandin E2 (PGE2), a mediator of inflammation. In the present study, the potential of natural antiinflammatory compounds, specifically fumaric acid and …

Erratum To “Coriander (Coriandrum Sativum L.) Diversity Analysis: Insights From Germplasm Resources Leading To Crop Improvement”[Turkish Journal Of Agriculture And Forestry 48 (6) 2024 876-887], Amit Baran Sharangi, Solanki Bal, Anirban Maji, Tarun Kumar Upadhyay, Reem Binsuwaidan, Nawaf Alshammari, Nadiyah M. Alabdallah, Adesh Kolapkar, Mohd Saeed

Turkish Journal of Agriculture and Forestry

We hereby issue this erratum to address a concern regarding the affiliation section in the manuscript titled “Coriander (Coriandrum sativum L.) diversity analysis: insights from germplasm resources leading to crop improvement.” A correction is issued regarding the affiliation detail in the originally published manuscript. The affiliation number for the ninth author, Mohd SAEED, was listed as 7, whereas it should have been 6. To amend this, the affiliation section in the manuscript has been revised as follows:

Link to the original article: https://journals.tubitak.gov.tr/agriculture/vol48/iss6/6/

Cover And Contents

Turkish Journal of Agriculture and Forestry

No abstract provided.

Early Survival And Growth Of Haloxylon Ammodendron Seedlings Under Irrigation In Arid Southern Tajikistan, Jieun Ahn, Gaeun Kim, Heejae Jo, Jieun Park, Youngjin Lee, Woo-Kyun Lee, Asia Khamzina, Yowhan Son

Turkish Journal of Agriculture and Forestry

Understanding plant drought responses is crucial for effective afforestation in drylands. This study aimed to investigate the effects of irrigation (31.25 mm seedling–1 every 45 days) on the early survival and growth of 3-month-old Haloxylon ammodendron seedlings at an afforestation site established in Tajikistan in 2021. In July 2022 and June 2023, surveys were conducted to compare seedling survival rates, height, root collar diameter (RCD), stem volume per unit area, and height-to-RCD ratio between irrigation (IR) and nonirrigation (NIR) treatments. The IR treatment increased survival rates in 2022 but not in 2023. By 2023, the IR treatment had increased the …

Yellow Stingray (Urobatis Jamaicensis) Jaw, Marissa Rosas, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Effects Of Cooking Oil And Bitter Gourd On Obesity Development In C57bl/6j Mice, Justin Talmadge Mcguire

Honors Theses

This study examined the use of different oils in the development of obesity and type 2 diabetes mellitus (T2DM), with bitter gourd incorporated into unhealthy diets to assess its effects. A total of 72 mice were divided into six groups. Two of these groups were gavaged with an aqueous solution of bitter gourd, with one group additionally receiving corn oil and the other receiving lard. The four groups that did not receive bitter gourd were each fed a different diet containing either corn oil, lard, canola oil, or olive oil. Measurements of weight, food intake, water consumption, blood glucose levels, …

Differential Binding Of Host Cell Proteins By Vpr Mutant R77q Compared With Wild Type Vpr, Madison C. Wagley

Theses and Dissertations

HIV Viral protein R (Vpr) is a multifunctional accessory protein which plays a role in nuclear import of the pre-integration complex, transactivation of HIV LTR promoter, cell cycle arrest, and apoptosis during HIV infection. R77Q is an HIV Vpr mutant which is associated with long-term non-progressor phenotypes, and which has previously been connected to higher levels of apoptosis compared to wild type Vpr in vitro. There are observable differences in host binding partners with HIV Vpr between wild type and R77Q strains as shown via coimmunoprecipitation and mass spectrometry. In one run R77Q samples showed binding to histone 1.2, 1.3, …

Development Of Raman Spectroscopic Methods To Analyze Chemical, Biological, And Physical Constituents For Food Safety And Quality, Hannah C. Broadbent

Theses and Dissertations

Ensuring food safety and quality is crucial for consumer health, satisfaction, and regulatory compliance. This study aims to develop rapid, reliable methods for detecting food constituents (i.e. lactose), pathogens (i.e. Listeria monocytogenes), and contaminants (i.e. micro- and nano-plastics) using Raman spectroscopy. With advantages like high specificity, minimal sample preparation, and fast analysis, Raman spectroscopy offers a promising alternative to traditional methods. This research explores its application in assessing chemical, biological, and physical properties of food to enhance safety and quality monitoring. Lactose-free products are increasingly popular due to the global prevalence of lactose intolerance, creating a need for effective verification …

Modeling Differential Expression In Scrna-Seq Data With A Difference Of Two Negative Binomial Distributions, Alicia Petrany

Theses and Dissertations

Single cell RNA sequencing (scRNA-seq) is a powerful high throughput sequencing technology that quantifies the transcriptome at a single cell resolution. Differential expression (DE) analysis is a key scRNA-seq analysis task that identifies genes with statistically significant expression changes in response to biological stimuli. Existing DE methods inherently attempt to determine whether two sets of negative binomially distributed read counts are significantly different but lack exact testing strategies to do so. This work introduces a novel theoretical distribution, the Difference of Two Negative Binomial Distributions (DOTNB), and implements it within DEGage, an R package for DE analysis. Benchmarking DEGage against …

Adapting To Climate Change In Semiarid Regions Via Conservation Measures: Climate-Smart Crop Rotations Of Food Legumes In Cool Seasons, Velibor Spalevic, Mohsen Janmohammadi, Naser Sabaghnia, Shuraik Kader

Turkish Journal of Agriculture and Forestry

The high potential of evapotranspiration, unsuitable soil conditions, irregular distribution of rainfall, and ineffective techniques of soil moisture conservation are among the limitations of semiarid regions of Central and West Asia and North Africa (CWANA), and they have intensified during recent decades with climate change. CWANA’s agroecosystems are fragile and highly vulnerable to the consequences of global warming and aggravation of water scarcity, and need to redefine agroclimatic zoning. Winter cereals are the predominant crops in the region of CWANA. The highest amount of cultivation is allocated to societies with dominant rainfed agriculture, which is often not economically profitable. The …

Remote Sensing Estimation Of Forest Ecosystem Service Values, Yu Zhang, Zhichao Guo, Guoshuang Tian, Minghua Lei

Turkish Journal of Agriculture and Forestry

A precise estimation of the value of forest ecosystem services (FESVs) has become essential due to the growing significance of the influence of global climate change on them. The primary objective of this study was to enhance the precision of forest service value monitoring and evaluation, thereby providing a scientific foundation for the promotion of sustainable forest resource management and ecological civilization construction. The study presented a remote sensing estimation (RSE) technique that combined time series characterization (TSC) and double-logistic regression (DLR) in order to achieve this. Through the integration of TSC analysis and a substantial amount of remote sensing …

Postharvest Application Of 1-Methylcyclopropene And Modified Atmosphere Packaging Extends Shelf Life And Maintains Eating Quality Of Mango Fruit Cv. Sufaid Chaunsa, Hafiz Muhammad Usman, Sajid Hussain, Raheel Anwar, Ahmad Sattar Khan, Aman Ullah Malik, Muhammad Moaaz Ali, Khurram Ziaf, Arooba Abbas

Turkish Journal of Agriculture and Forestry

The mango (Mangifera indica L.) fruit is globally relished for its sweet taste, unique aromatic profile, and enriched nutritional value. However, its short postharvest life is a serious challenge for export to long-distance markets. 1-Methylcyclopropene (1-MCP) is an ethylene inhibitor known to delay ripening in many fruits, including mango. However, comparative research suggesting an appropriate method to treat mangoes with 1-MCP is limited. In this study, mango fruit cv. Sufaid Chaunsa were fumigated with 0.25 ppm 1-MCP or treated aqueously with 1.2 ppm 1-MCP for 5 min and then packed in modified atmosphere packaging (MAP). The control fruits were not …

Effect Of Eco-Friendly Fertilizers And Edible Coatings On Fatty Acids And Phenolics In Fresh-Cut Melon During Cold Storage, Firat İşlek

Turkish Journal of Agriculture and Forestry

The demand for convenient and ready-to-eat food has increased, including fresh-cut fruit and vegetables. At the same time, people are also becoming more health-conscious and are aware of the positive impact of healthy food choices on their well-being. For this reason, it is important to deliver fruits and vegetables to people’s tables using both environmentally and human-friendly practices, from cultivation to postharvest storage. In the current study, in order to support agricultural sustainability, humic acid, liquid vermi¬compost, and organomineral fertilizers that do not pose a risk to human health or the environment were used in melon. Furthermore, several edible coverings …

Allelic Diversity Of Azerbaijani Bread Wheat (Triticum Aestivum L.) By Ssr Markers, Javi̇d Ojaghi, Sevi̇nj Nuriyeva, Sami̇ra Salayeva, Mahammad Eldarov, Zeynal Akparov, Jamala Eldarova Mursalova

Turkish Journal of Agriculture and Forestry

The objectives of this research entailed studying genetic variation in 50 Azerbaijani wheat accessions from 6 different botanical varieties using simple sequence repeat (SSR) markers. On the basis of the seven SSR primers used in this work, 42 different alleles were observed among the wheat accessions studied with an average of six alleles per locus. Polymorphism information content (PIC) ranged from 0.428 to 0.772, revealing the existence of rich genetic diversity in Azerbaijani wheat accessions. The highest PIC values were calculated with the Xgwm190, Xgwm337, and Xgwm261 SSR primers with a mean value of 0.561. Cluster analysis representing the Nei …

The Effect Of Lithium On Intracellular Myo-Inositol Levels In Human Lymphoblasts Of Bipolar Disorder Patients, Ntakirutimana Francine

Honors Theses

Bipolar disorder is a chronic disorder characterized by mood swings of mania and depression. Bipolar I is characterized by intense mania, while bipolar II is characterized by hypomania and depression. Currently, there is no cure for bipolar disorder; however, one mainstay of treatment is lithium, which is hypothesized to alleviate symptoms by reducing myo-inositol.

In this study, the effect of lithium on intracellular myo-inositol was determined in lymphoblasts derived from bipolar disorder patients and compared to that of lymphoblasts from a neurotypical individual. At 1mM lithium, the data showed increased myo-inositol levels across cell lines; however, the results were not …

Functional Protein Biomarkers Based On Distributions Of Expression Levels In Single-Cell Imaging Data, Misung Yi, Tingting Zhan, Hallgeir Rui, Inna Chervoneva

Department of Pharmacology, Physiology, and Cancer Biology Faculty Papers

MOTIVATION: The intra-tumor heterogeneity of protein expression is well recognized and may provide important information for cancer prognosis and predicting treatment responses. Analytic methods that account for spatial heterogeneity remain methodologically complex and computationally demanding for single-cell protein expression. For many functional proteins, single-cell expressions vary independently of spatial localization in a substantial proportion of the tumor tissues, and incorporation of spatial information may not affect the prognostic value of such protein biomarkers.

RESULTS: We developed a new framework for using the distributions of functional single-cell protein expression levels as cancer biomarkers. The quantile functions of single-cell expressions are used …

Emergence Of Heterogeneity In Bacteria During Antibiotic Exposures, Mirjana Stevanovic

Dartmouth College Ph.D Dissertations

Bacterial populations exposed to antibiotics often exhibit phenotypic heterogeneity, with individual cells displaying distinct responses with fates ranging from survival to arrest or death. The emergence of this heterogeneity is largely driven by feedback mechanisms mediated by the interactions between antibiotic action, gene regulation, and cellular metabolism. These responses unfold in dynamic environments where conditions such as nutrient availability and drug concentration fluctuate over time and space. Yet, these complex interactions and their role in shaping population-level outcomes during drug responses remain poorly understood. Using tetracycline resistance in E. coli as a model system, this thesis focuses on how these …

Lack Of Patient-Centered Care Relative To Evidence-Based Practice In Clinical Diagnosis And Treatment Of Endometriosis In The U.S.: A Review, Piper E. Scoskie

Honors Theses

This scoping review examines the impact of combining Patient-Centered Care (PCC) and Evidence-Based Care (EBC) on clinical outcomes and patient satisfaction in the diagnosis and treatment of endometriosis in the United States. In particular, the review aims to (1) examine the body of research from the United States to learn more about the connection between PCC and EBC and their collective impact on patient satisfaction and clinical outcomes in the treatment of endometriosis; (2) identify the gaps in existing research and practice, specifically regarding PCC procedures, varying patient populations, and longitudinal investigations; and (3) provide recommendation for future research and …

Roles Of Cpsa And Slamf1 In The Innate Immune Response To Mycobacterium Tuberculosis, Steven Grigsby

Arts & Sciences Graduate Student Theses and Dissertations

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), possesses an arsenal of virulence factors to evade host immunity. Not only is Mtb able to evade innate immunity, but adaptive immunity also often fails to adequately control Mtb infection. A mechanistic understanding of how Mtb establishes infection and evades immunity is critical to the development of a protective vaccine and novel therapeutics. The Mtb protein CpsA protects Mtb against the host NADPH oxidase and LC3-asociated phagocytosis of the innate immune system. Consequently, a ΔcpsA mutant is initially attenuated in vivo but eventually reaches the same bacterial burden in the lungs …

Effects Of Pharmacologic And Genetic Manipulation Of Gaba-A Receptors On Network Activity, Peter Michael Lambert

Arts & Sciences Graduate Student Theses and Dissertations

GABAA receptors (GABAARs) are the primary inhibitory neurotransmitter receptors in the central nervous system. A rich diversity of receptor subtypes are produced by the combination of various GABA receptor subunits into a heteropentameric chloride channel. Inhibitory signaling through GABAARs occurs on timescales ranging from fast synaptic events lasting milliseconds to tonically active receptors providing standing inhibitory tone. GABAARs are modulated by many clinically important drugs including anesthetic, hypnotic, anxiolytic, and antidepressant agents. Of note, GABAARs are modulated by neurosteroids, which have recently been developed as novel therapeutic agents for psychiatric disease. The synchronized activation of GABAARs through coordinated activity of …

A Burial Cave From The Roman Period At Shoham (East), Hagit Torgë, Radwan Badhi

'Atiqot

No abstract provided.

Fish Remains From ‘En Gedi, Omri Lernau

'Atiqot

No abstract provided.

2025 Academic Conference Program

Holy Cross Undergraduate Academic Conference

No abstract provided.

Image Analysis Of Pupal Sex Ratio In Honey Bee Hives, Anna Tattelman, Grace O’Brien

Biology Student Scholarship

Anna Tattelman ’27, Environmental Biology major

Grace O’Brien ’26, Biology major

Faculty mentor: Dr. Rachael Bonoan, Biology

Our project analyzes honey bee hive development over time. We are specifically looking at drone comb production over a four-week period with varying hive conditions and treatments. It has become more difficult to manage bee hives due to parasitic mites, such as Varroa Destructor. A common method beekeepers use to protect honey bees against these threats is adding drone comb to attract then remove mites. Through drone comb analysis we can determine how honey bees are responding to the treatments by evaluating their …

Neuronal Cftr: A Study Of Subcellular Localization And Interactions With Implications For A Role In Synaptic Transmission, Brandon J. Leviskas

LSU Doctoral Dissertations

Protein-protein interactions vary among cell types and the localization of these interactions help to define protein function. The function of cystic fibrosis transmembrane conductance regulator (CFTR) is well established in the context of epithelial tissue due to the debilitating effects of its mutations that cause the disease cystic fibrosis. While in neurons a role has been established in our lab for CFTR in the regulation of cytosolic Cl- in retinal amacrine cells (ACs). This research sets out to learn if CFTR has a synaptic role. Exploring this potential role, localization of CFTR was examined using fluorescent and immunogold labeled transmission …

Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part Xxxvii. The Genus Hemiscorpius (Hemiscorpiidae), František Kovařík, Hassan Sh A. Elmi, František Šťáhlavský

Euscorpius

Occurrence of the rare in the Horn of Africa genus Hemiscorpius Peters, 1861 (Scorpiones: Hemiscorpiidae) is summarized, including a distribution map. A male of Hemiscorpius lipsae Kovařík & Lowe, 2022 from Djibouti is described for the first time. A new species Hemiscorpius huluul sp. n. from Somaliland is described, fully complemented with color photographs.

Effects Of Citric Acid, Synbiotic, And Probiotic Supplementation Through Drinking Water On Growth Performance, Carcass Yield, And Blood Biochemistry Of Broiler Chickens, Shahadot Hossain, Biswajit Kumar Biswas, Subir Das, Faija Sadia Pory, Rabin Raut, Fatima Yeasmin, Sharif Uddin Khan, Prantho Malakar Dipta, Sabbir Alom Shuvo, Tahera Yeasmin, Raihanul Hoque

Food and Animal Sciences Faculty Research

No abstract provided.

Intervention Strategies To Overcome Hpv Vaccine Hesitancy Among Hispanic Immigrants In The Usa: A Video-Based Ap-Proach, Jamie Jensen

ScholarsArchive Data

These data come from a nationwide survey administered by Qualtrics testing a video intervention to help Hispanic Immigrants overcome barriers to HPV vaccination.

Restoring Exotic Cool-Season Grass Dominated Landscapes With Clethodim And Glyphosate, Eleanor J. Muzzy, Joshua D. Wiese, Abraham J. Kanz

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

A major threat to grasslands around the world is the spread of exotic cool-season grasses (ECSG). ECSG dominate vegetative communities and degrade critical habitats. One of the most common methods to treat ECSG is herbicide. To compare how the widely-used, non-specific herbicide glyphosate compared to the grass-specific herbicide clethodim, we conducted a fall spray in November 2023 at two different sites located in the Central Platte River Valley of Nebraska. The following June, we used a modified Daubenmire frame sampling method to gather data on relative cover, species richness, and community composition. After analysis, glyphosate appeared to be more effective …