Digital Commons Network^™

Modeling Serotonin Metabolism Towards A Diagnostic Skin Test For Depression, Joel Greenfield

Biology and Medicine Through Mathematics Conference

No abstract provided.

Dynamical Systems Modeling To Determine The Role Of Crosstalk In Shaping Stat Signaling Profiles, Laura F. Strube, Anamarie Martinez, Neha Cheemalavagu, Karsen Shoger, James Faeder, Rachel Gottschalk

Biology and Medicine Through Mathematics Conference

No abstract provided.

Mathematical Modeling Of A Coral-Symbiont System To Assess Heat-Induced Bleaching, Anna Zittle, Angela Reynolds, Rebecca Segal, Liza Roger, Nastassja Lewinski

Biology and Medicine Through Mathematics Conference

No abstract provided.

Parameter Sensitivity, Identifiability, And Estimation For A Data-Driven Model Of Malaria, Katharine Gurski, Kathleen Hofman

Biology and Medicine Through Mathematics Conference

No abstract provided.

Making (Heat)Waves: Intermittent Thermal Stress Effects On Beet Armyworm (Spodoptera Exigua) Growth To Eclosion, Shane Dreher, Swayamjit Ray

Research and Creative Works Expo

In this study, we demonstrated how application of heat stress, followed by rapid cooling, affected the rate at which beet armyworm caterpillars gained weight, entered pupation and exited their pupae as moths via eclosion.

Agentic Scientific Machine Learning For Autonomous Model Discovery In Systems Pharmacology, Nazanin Ahmadi, George Karniadakis

Biology and Medicine Through Mathematics Conference

No abstract provided.

Assessing Lagged Temperature Effects On Mosquito Life-History Traits, Nusrat Tabassum Dr.

Biology and Medicine Through Mathematics Conference

No abstract provided.

Incorporating Thermal Performance Curves Into Population Dynamic Models For The West Nile Vector, Culex Pipiens, Benjamin Bruncati, Helle Aronson, Chloé Lahondère, Michael A. Robert

Biology and Medicine Through Mathematics Conference

No abstract provided.

Digging Deep Into Curation: A Guide To Creating A Local Fossil Museum, Syd Joheim, René Shroat-Lewis

Research and Creative Works Expo

In Arkansas, the dissemination of educational content related to evolution and natural history is often constrained by prevailing cultural dynamics. This has resulted in a significant gap in the exposure of primary and secondary school students to foundational concepts in natural history and physical sciences. Even the state’s most popular science and history museums often intentionally exclude exhibits that risk upsetting a large portion of their visitors, further exacerbating the issue. As a consequence, many children do not receive proper education on natural history and physical sciences.  To address this educational deficiency, researchers identified and cataloged specimens from a collection …

The Effects Of Cinnamaldehyde On Tetrahymena Thermophila, Sydney Kurland

Publications and Research

In addition to their common use as spices in cooking and baking, cinnamon plants, Cinnamomum zeylanicum and Cinnamomum cassia for example, have long been used in herbal remedies worldwide. Cinnamon contains many vital oils and active compounds including cinnamaldehyde (CMD). Numerous studies looking at potential therapeutic effects of cinnamon have demonstrated its antioxidant, anti-inflammatory, and antimicrobial properties (1, 2, 3).   Therefore, it is important to continue studying the efficacy, benefits, and mechanisms of action of cinnamon and CMD to have a complete understanding of its full potential. Tetrahymena thermophila is a ciliated protozoan commonly used as a model organism to …

Phosphate-Mediated Regulation Of Intracellular Calcium Dynamics, Huma Shahzad, Mohammed S. Razzaque

School of Medicine Publications

Phosphate (Pi) and calcium (Ca2+) are essential mineral ions that play coordinated roles in maintaining normal cellular functions. While various steps of calcium signaling are well characterized, emerging evidence suggests the critical role of both intracellular and extra cellular phosphate in regulating intracellular Ca2+. In the cytoplasm, phosphate influences ATP production and organelle calcium buffering and influences the activity of calcium pumps, such as sarcoplasmic/endoplasmic reticulum Ca2+-ATPase (SERCA) and the plasma membrane Ca2+-ATPase (PMCA). Extracellular phosphate, taken up via sodium-dependent phosphate transporters, triggers signaling cascades that affect the processes of calcium influx, storage, and release. Additionally, high extracellular phosphate levels …

The Risk Of Bpa In B Lymphocyte-Mediated Autoimmunity, Mario J. Palacios

Senior Honors Theses

Autoimmune disorders disproportionately affect females, a bias largely attributed to estrogen's modulation of B lymphocyte development and tolerance. Bisphenol A (BPA), a common plastic monomer, shows estrogenic activity and acts as an endocrine disruptor and epigenetic modifier. This thesis examines how BPA may increase autoimmune risk by mimicking estrogen such that it can excite estrogen receptors which rescue autoreactive B lymphocytes from apoptosis. While direct research linking BPA to B lymphocyte-mediated autoimmunity is limited, understanding BPA’s course of action in B lymphocytes is critical for addressing the rising prevalence of autoimmune diseases and its possible link to the increased and …

Understanding Behavioral And Representational Divergences Of Humans And Machines, Thomas Lasman Botch

Dartmouth College Ph.D Dissertations

Human behavior and cognition are strikingly variable: people differ from one another in their preferences and abilities, and even from themselves across situations. Yet this diversity arises from common neural machinery shaped by the complex environments humans inhabit. A central objective of cognitive neuroscience is to understand how this varied experience emerges from interactions between brains, agents, and environments. In this dissertation, I argue that comparing behavior and neural computation across humans, artificial systems, and contexts is essential for understanding the flexibility of human cognition. Across three chapters, I use this comparative approach to examine how the rich, multimodal contexts …

Assessing Vegetation Health Following The 2014 Carlton Complex Fire Using Remote Sensing, Rachael Sv Pentico

2026 Symposium

Climate change, combined with decades of altered fire regimes and fire suppression, has increased fuel accumulation across western U.S. forests, contributing to more frequent, larger, and more intense wildfires. Remote sensing offers an effective approach for analyzing these large-scale fire events and their ecological impacts, as satellite imagery enables affordable, accessible, and reproducible monitoring of vegetation change across broad spatial and temporal scales. This study examined the 2014 Carlton Complex Fire in the Methow Valley, Washington. Burning 265,108 acres, it was the largest wildfire in Washington State history at the time and caused extensive agricultural and forest damage. Post-fire vegetation …

Influence Of Pollinator Island Patch Size On Forb Establishment And Pollinator Networks In Palouse Prairie Restoration, Yaelle Esther Reeve

2026 Symposium

The Palouse Prairie Ecoregion is one of North America’s most endangered grassland ecosystems, with less than 1% retaining native vegetation. Restoration efforts have struggled to re-establish ecologically important native forbs and the plant–pollinator interactions necessary for long-term community stability. Spatial configuration of floral resources is known to influence pollinator foraging behavior and interaction network structure, yet few studies have evaluated how planting scale affects both plant establishment and pollinator community assembly in early-stage prairie restoration. My research aims to evaluate how variations in the size (0.1, 1, and 10 m²) of grouped wildflower plantings (pollinator islands) affect native forb establishment, …

A Herpetological Survey Of The Catawba Nation, York County, South Carolina, Courtney Skeldon, Marvin Bouknight, Steven E. Fields

Journal of the South Carolina Academy of Science

No abstract provided.

Recognition Of The Spring Flight Of Celastrina (Tutt) (Lycaenidae: Polyommatinae) In Southern New England As An Introgressed Hybrid Species, Harry Pavulaan

The Taxonomic Report of the International Lepidoptera Survey

Populations of Celastrina (“Azure”) butterflies in southern New England have historically been referred to as either C. ladon (Cramer) or C. lucia (W. Kirby) by various authors. Following the discovery of elongated dorsal wing scales in males of C. ladon (D. Wright & Pavulaan, 1999; Ômura et al., 2015)—structures that replace the androconia that are typically present in most Celastrina species—it was believed that this trait was restricted to C. ladon, C. nigra (W. Forbes), and, more recently, C. iryna (Pavulaan, 2025). Microscopic examination of male “Spring Azure” specimens from across southern New …

A Preliminary “Then And Now” Look At 70+ Years Of Historic Landscape Photos From Roan Mountain, Nc-Tn, James T. Donaldson, Charles F. Warden, Jennifer Bauer

Faculty Open Access Works

PowerPoint originally presented at the 18th Annual SAMAB Conference, Carnegie Hotel, Johnson City, TN (October 22-24, 2007).

Updated in 2015, 2023, 2026 (reformatted and clarified).

Survey Of Student Perceptions And Use Of Artificial Intelligence When Reading Primary Literature In The Biological Sciences, Erin L. Zimmer, Michael I. Zimmer

Biology Department Faculty Articles

Artificial intelligence (AI) tools are increasingly used by students in higher education, yet little is known about how they are applied when reading primary scientific literature. This study investigated how undergraduate biology students use AI while engaging with primary research articles and how such use influences confidence, engagement, and perceived learning. Using a mixed-methods design across two institutions, we collected pre-course surveys assessing prior AI experience and attitudes, weekly self-reported AI usage logs during a semester-long primary literature–based course, and post-course surveys evaluating changes in practices and perceptions. Students entered the course with broad familiarity with generative AI but expressed …

Genetic Variation In Crops Of The Second Millennium Bce Revealed By Ancient Dna Analysis, Asi̇ye Uluğ, Funda Özdemi̇r Deği̇rmenci̇, Çi̇ğdem Kansu, Christina Luke, Christopher H. Roosevelt, Zeki̇ Kaya

Turkish Journal of Botany

For millennia, the Anatolian plateau has functioned as a major migratory corridor between Africa, Asia, and Europe and has subsequently been shaped by shifting settlement patterns, ranging from small communities to complex urban and imperial systems. These processes were closely associated with the development and diversification of agricultural practices. Archaeobotanical investigations at Kaymakçı, a Middle and Late Bronze Age (ca. 3500 years BP) site located in the middle Gediz Valley of western Anatolia, have provided substantial evidence of crop cultivation in the region. In this study, genetic variation in barley (Hordeum vulgare L.), chickpea (Cicer arietinum L.), bitter vetch (Vicia …

Applied Reproductive Science: Technology, Ethics, And Management In Modern Animal Systems, Hagan Beach

Publications

This creative component course development project includes five (5) supplementary lessons focused on animal welfare concerns in livestock reproduction, biological foundations of ethical animal reproduction, responsible use of reproductive technology, ethical reproductive management, and ethical breeding decisions in livestock genetics. This resource also includes a teacher guide, supplementary instructional materials, assessment materials, implementation guidance, and reflection sections.

Together, these components give teachers a usable set of lessons and support materials for bringing ethical decision-making into animal science instruction. Although each lesson can stand on its own, the sequence was arranged to move from foundational reproductive science into more applied questions …

Apoe Ε2 Potential Protection Against Long-Term Consequences Of Traumatic Brain Injury, Rebecca Faith Mesidort

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Traumatic brain injury (TBI) can alter the quality of life, often resulting in cognitive decline, neurodegeneration, or death. There have been no biological advances to resolve the long-term consequences of TBI. The APOE ε2 gene is well known as a neuroprotectant against neurodegenerative diseases such as Alzheimer’s disease and Parkinson’s disease. However, the biological mechanisms of how APOE ε2 protects against neurodegeneration are unknown. The purpose of this study is to investigate APOE ε2’s response to an environmental stimulus that leads to neurodegeneration, TBI, and further investigate APOE ε2’s biological mechanisms. After inflicting blunt force trauma to our model organism, …

In Vitro Modeling Of Macrophage And Cd8+ T Cell Activation: Evaluating Immortalized Cell Lines For Use In Undergraduate Immunology Laboratories, Lucy Groothuis

Masters Theses

The immune system is a complex, highly coordinated network of cells and signaling molecules that protects the body from infection and disease. Immunology is therefore a fundamental component of undergraduate education for students pursuing careers in medicine and biomedical research. Despite its importance, many undergraduate immunology courses lack a laboratory component. To address this gap, we developed an open-access immunology laboratory manual and evaluated its ability to generate meaningful data using primary murine cells and commercially available cell lines. Given the cost and logistical constraints of using mouse models in an undergraduate laboratory setting, we evaluated whether immortalized cell lines …

Cover And Contents

Turkish Journal of Botany

No abstract provided.

Nitrogen Limitation Adaptation (Nla) Modulates Phosphorus And Iron Homeostasis During Boron Toxicity In Arabidopsis Thaliana, Doğa S. Kayihan, Ümi̇t Bariş Kutman, Emre Aksoy, Ceyhun Kayihan

Turkish Journal of Botany

Boron (B) toxicity is a major abiotic stress factor that impairs plant growth and disrupts nutrient homeostasis. The Nitrogen Limitation Adaptation (NLA) gene has been implicated in nutrient regulation; however, its role under B toxicity remains unclear. In this study, the physiological, biochemical, and nutrient responses of wild-type (Col-0) and nla mutant Arabidopsis thaliana were investigated under mild (1 mM H3 BO3 ; 1B) and severe (2 mM H3 BO3 ; 2B) B toxicity conditions. Excess B reduced fresh weight and photosynthetic pigment levels in both genotypes; however, nla mutants exhibited lower malondialdehyde accumulation under 1B, indicating a delayed oxidative …

Improved Nutritional Value Of Spinach (Spinacia Oleracea L.) Through Moderate Salinity-Induced Regulation Of Vitamin C And Folate Pathways, Laleh Ahmadi, Hanieh Mohajjel Shoja, Elham Mohajel Kazemi, Maryam Kolahi

Turkish Journal of Botany

Soil salinity is a major abiotic stress affecting over 20% of cultivated and 33% of irrigated lands worldwide, significantly limiting crop productivity and nutrient biosynthesis. Vitamin C and folate are crucial antioxidants in plant stress tolerance and human nutrition; however, their regulation under salt stress remains unclear, particularly in leafy vegetables. This study evaluated the effects of different salinity levels (0, 50, 150, 250, and 350 mM NaCl) on physiological traits, antioxidant activity, vitamin C and folate accumulation, and the expression of related biosynthetic genes in spinach (Spinacia oleracea L.). High salinity (250–350 mM) reduced growth, leaf area, and pigment …

Identification Of Qtls And Molecular Markers Associated With Gray Mold Resistance In Grape, İlknur Polat, İbrahi̇m Çeli̇k, Onur Ergönül, Asli Polat, İlker Kurbetli̇, Görkem Sülü, Ayfer Daldal, Hali̇l İbrahi̇m Uzun

Turkish Journal of Botany

Grape (Vitis vinifera L.) is an economically important fruit that is both consumed fresh from the vine and used in the production of raisins, wine, and vinegar. One of the main factors limiting grape production is gray mold, caused by the fungal pathogen Botrytis cinerea. The cultivation of mold-resistant grape cultivars represents the most effective strategy for disease management; however, molecular tools to aid in the breeding of B. cinerea-resistant grapes remain limited. The present study maps the quantitative trait loci (QTLs) associated with B. cinerea resistance in grape using an F1 population derived from a reciprocal cross between the …

Behavioral And Molecular Effects Of 2,4-Dichlorophenoxyacetic Acid Exposure In Planarians, Emily Pintilie

Graduate Student Dissertations, Theses, Capstones, and Portfolios

The widespread use of pesticides, such as 2,4-dichlorophenoxyacetic acid (2,4-D), raises serious concerns about their effects on non-target aquatic organisms. In vertebrates, 2,4-D has been associated with neurotoxic outcomes. Planarians offer a valuable system for toxicological studies because of their well-characterized nervous system, regenerative capacity, and measurable behavioral responses. This study investigated the neurotoxic effects of 2,4-D exposure in the planarian species Girardia dorotocephala, including the assessment of nociceptive behaviors, survival rate, phototactic responses, and DNA methylation. Worms were exposed to various concentrations of 2,4-D (0–100 mg/L) at multiple time points. Nociceptive responses, such as scrunching, C-shapes, and seizures, …

The Detection Of Forever Chemicals From Paper Cups Using Colorimetry, Sara Miller

Graduate Student Dissertations, Theses, Capstones, and Portfolios

Per- and polyfluoroalkyl substances (PFAS) are synthetic chemicals added to food packaging products to increase water-resistance and durability. PFAS are a growing concern due to their migration into beverages and foods and have been linked to cancer, immunotoxicity, and thyroid disturbances. The purpose of this study was to quantify PFAS migration from paper cups into water and evaluate toxic effects using planarians. PFAS detection was performed using a colorimetric assay, which forms a colored complex with PFAS, on: perfluorononanoic acid (PFNA), heptadeca fluorooctane sulfonic acid potassium salt (PFOS), perfluorooctanoic acid (PFOA). PFNA and PFOS showed absorbance at 640 nm, while …

The Effects Of Water Quality On The Physiological Responses Of Daphnia Magna, Sara Al Shekha, Alexis Avila-Hernandez

COD Library Student Research and Award Symposium

After conducting research on the effects of water quality on the physiological response of Daphnia magna, a common freshwater invertebrate, the biological stress response significantly differed in heart rates among groups, which differed from the original hypothesis after exposing the invertebrates to various samples of local pond water.

Faculty Sponsor:  Professor Lynda Randa