Digital Commons Network^™

Geographic Range And Body Size Influence Abundance Patterns In Reef Fishes, M. F. Maxwell, D. R. Barneche, R. Divieso, S. R. Floeter, O. J. Luiz, A. L. Luza, M. R. Pie, A. C. Siqueira, M. G. Bender

Research outputs 2022 to 2026

Aim: Understanding how body size and geographic range size influence species abundance is central to macroecology. Here, we characterized these relationships for reef fishes, the world's most diverse vertebrate group, across global and regional scales. Location: Global tropical and subtropical reefs. Time Period: Current. Major Taxa Studied: Reef-associated fishes. Methods: We compiled a comprehensive dataset on abundance, body size and geographic range size for 828 reef fish species. Abundance was measured as density (ind/m²) using transect-based observational data. To analyse global-scale patterns, we applied Bayesian quantile regressions and Bayesian phylogenetic regressions to account for phylogenetic relatedness. We also …

Microbial Literacy, Equity, And Sustainability At Cal Poly: A Policy Framework With University Housing As A Pilot Case, Joseph B. Fewel

Biological Sciences

Microorganisms play a fundamental role in human health, environmental systems, and the functioning of built environments, yet they remain largely absent from sustainability and public policy discussions. This project proposes a framework for integrating microbial literacy, equity, and health into institutional decision-making, using California Polytechnic State University (Cal Poly) as a case study and university housing as a pilot site for implementation. Drawing on interdisciplinary literature in microbiology, public health, environmental justice, and sustainability, as well as policy analysis and stakeholder interviews, this project examines how campus systems, including housing, ventilation, sanitation, food systems, and waste management, shape microbial exposure …

Exercise Therapy For Mood Disorders In Retiring/Former Athletes, Christian Antos

Dissertations

This dissertation examined the potential integration of exercise therapy and psychotherapy as a treatment approach for mood-related difficulties experienced by former elite athletes during the transition out of competitive sport. Retirement from athletics is often associated with significant biopsychosocial challenges, including disruptions in identity, healthy routines, social support, and emotional well-being. Existing literature suggests that exercise may serve as an effective adjunctive intervention for improving mood and overall psychological functioning, though limited research has explored its application among retiring athletes within psychotherapeutic contexts. This literature review synthesized current research related to athletic retirement, neurobiological mechanisms associated with physical activity, and …

Decentralizing Dementia Research To The Us–Mexico Border: The Rio Grande Valley Ad-Rcmar As A Model For Translational Equity, Gladys E. Maestre, John Blangero, Eron Manusov, Gabriel A. De Erausquin, Francisco Fernandez, Silvia Mejia-Arango, Vincent P. Diego, Juan C. Lopez-Alvarenga, Claudia Alaniz, Neyra García, Rosa V. Pirela, Andrew Tsin, Michael Mahaney

School of Medicine Publications

Translational equity means ensuring that diagnostics, treatments, care models, and prevention strategies are developed and implemented so they work for populations with the greatest burden and least access to care. In Alzheimer's disease and related dementias (ADRD), where most evidence derives from highly educated, non-Hispanic White participants at large academic centers, translational equity is critical to prevent misclassification, limited access, and widening disparities and to ensure that underrepresented communities shape how new knowledge moves into practice. Hispanic and other populations in the United States are disproportionately affected by ADRD yet remain underrepresented in research, with gaps especially pronounced in high-poverty …

Arkansas Corn And Grain Sorghum Research Studies 2025, Jason Kelley, Travis Faske

Arkansas Agricultural Experiment Station Research Series

The 2025 edition of the Arkansas Corn and Grain Sorghum Research Studies Series includes research results on topics pertaining to corn and grain sorghum production, including weed, disease, nematode, and insect management; economics; irrigation; agronomics; soil fertility; drone use; research verification program results; and numerous miscellaneous topics. Our objective is to capture and broadly distribute the results of research projects funded by the Arkansas Corn and Grain Sorghum Board. The intended audience includes producers and their advisors, current investigators, and future researchers. The Series serves as a citable archive of research results. The reports inform and guide our long-term recommendations, …

Evaluating Species At Risk In Data-Limited Fisheries: A Productivity–Susceptibility Analysis For Marine Aquarium Fish, Gabrielle A. Baillargeon, Alice A. Wynn, Jemelyn Grace P. Baldisimo, Michael F. Tlusty, Andrew L. Rhyne

Arts & Sciences Faculty Publications

The marine aquarium trade (MAT) is a significant global industry harvesting millions of wild-caught, live coral reef fishes for public and private aquaria markets in the United States and Europe annually, while supporting fisher livelihoods in the Indo-Pacific. This diverse and species-rich trade is considered data-limited, creating barriers to quantifying the current and future socio-ecological sustainability of the fishery. We present a revised and expanded productivity–susceptibility analysis (PSA) that serves as a holistic risk assessment to estimate the vulnerability of marine aquarium fish to overfishing. Our global analysis includes 306 species that are actively in trade. Improvements to the PSA …

Kolonialisme Iklim Dan Tercerabutnya Pengetahuan Ekologi Tradisional: Sosio-Bioekonomi Sebagai Reorientasi Epistemologis, Viky Arthiando Putra

Antropologi Indonesia

Abstract The global climate change has brought with it a growing stack of conceptual proposals – from green economy to bioeconomy – each presenting itself as a non-extractive economic alternative. Unfortunately, these conceptual claims continue to reproduce colonial logic that subordinates local knowledge. The loss of Traditional Ecological Knowledge (TEK) is not merely an ecological setback: it is a systematic epistemological violence – a product of climate colonialism operating within the architecture of global green programs. This article traces the discourse of green economy, analyzes the loss of TEK as an epistemological problem, and proposes a socio-bioeconomy reorientation as a …

Effects Of Led Light Spectra And 1-Mcp On Postharvest Quality And Bioactive Compounds Of Cucumber (Cucumis Sativus L.) During Cold Storage, Imad Eldin Abbas Yousif

Theses

Extending postharvest quality and maintaining the nutritional value of cucumber fruit requires specific storage conditions to postpone senescence and enhance marketability. The postharvest lighting environment is a main factor that influences quality preservation for harvested biomass. The objective of this study was to investigate the effects of different light emitting diodes (LED) spectra (green, red, blue, and white LED) alone or in combination with 1-Methylcyclopropene (1-MCP) on postharvest quality and bioactive compounds of cucumber fruit during cold storage for 16 days at 5°C, the control fruit were left in the dark. For combined treatment, the fruits were exposed to 1-MCP …

Gc-Ms-Based Comparative Analysis Of Compounds In Host Plants And Insect Gut Extracts, Rita Dill, Kimberly Smith, Shelia Okoth, Xavier Cheseto, Anne Osano

All Peer-Reviewed Publications

Background/Objectives: Herbivorous insects feed on plant tissues to obtain nutrients necessary for growth and development while simultaneously ingesting diverse plant secondary metabolites. Understanding the fate of these compounds during digestion is important for advancing knowledge of insect nutritional physiology and diet-associated biochemical processes. This study aimed to comparatively profile metabolites in host plants and corresponding insect gut extracts to generate insights into compound transfer and compositional changes within these systems. Methods: Gas Chromatography-Mass Spectrometry (GC-MS) metabolomics was combined with Ultraviolet-Visible (UV–Vis) quantification of total phenols and flavonoids to compare host plant tissues and insect gut extracts in three systems: fall …

Climate-Driven Stochastic Modelling Of Crimean-Congo Haemorrhagic Fever Transmission In Uganda, P. G. Kpatchana, J. Aduda, K. M. Agboka

All Peer-Reviewed Publications

Crimean-Congo haemorrhagic fever (CCHF) is a climate-sensitive tick-borne zoonosis that remains a significant public health concern in Uganda, where temperature and vapour pressure deficit influence tick ecology and consequently disease transmission. This study aimed to develop and analyse a climate-driven stochastic model for CCHF transmission among ticks, livestock, and humans under environmental variability in Uganda. A compartmental transmission model was formulated and extended into a stochastic differential equation framework by incorporating multiplicative environmental noise. Climate-dependent tick recruitment, development, and mortality were parameterized using district-level temperature and vapour pressure deficit data to capture spatial heterogeneity in transmission risk. Theoretical analyses based …

Mapping Nucleosome Stability: Linking Oncogenic Structural Alterations To Long-Range Allosteric Communication, Augustine C. Onyema

Dissertations, Theses, and Capstone Projects

The nucleosome core particle (NCP) is essential for chromatin structure and function, serving as the fundamental unit of eukaryotic chromatin. Oncogenic mutations in core histones disrupt chromatin dynamics, altering DNA repair and transcription processes. How DNA communicates with histones, and how this information propagates through the histone, has been suggested to be a cooperative process. Here, I investigate the molecular consequences of two mutations, H2BE76K and H4R92T, using 36 µs of all-atom molecular dynamics simulations on Anton2. I also characterize the kinetic correlation within histone/DNA domains via conditional activity (CONDACT) using the dihedral angle as our degrees of …

Crop Performance Of Aromatic Basmati Rice Grown In Tidal Lands In Indonesia [Research Note], Riza Adrianoor Saputra, Indra Jatmika Liran, Yulia Padma Sari

The Philippine Agricultural Scientist

Rice production in Banjar Regency has declined in recent years due to land-limiting factors, particularly the suboptimal conditions of tidal wetlands. Therefore, improving cultivation techniques for new superior varieties such as Aromatic Basmati is essential to enhance productivity on marginal lands. This study aimed to determine the best combination of seedling number per planting hole and seedling age, as well as to evaluate the effect of each factor on the growth and yield of Aromatic Basmati rice cultivated on tidal land. The experiment was conducted for 4 mo (August to December 2020) in the experimental paddy fields of the Agricultural …

Postharvest Response Of Jute Mallow (Corchorus Olitorius L.) Tops To Different Storage Temperatures, Wella L. Absulio-Morales, James L. Tababa, Daphne Cassandra H. Gonzales, Genesis M. Banawa, Angelo C. Castro, Arlan James D. Rodeo

The Philippine Agricultural Scientist

Jute mallow (Corchorus olitorius L.), locally known as saluyot, is a nutrient-rich leafy vegetable, but its potential remains underutilized due to its high perishability. This study determined the postharvest behavior of jute tops stored at 4 different temperatures (5, 13, 20, and 28 °C). Key quality parameters were measured at specific time intervals. The marketable shelf life of jute tops was 7 d at 5 and 13 °C, but only 2 and 3 d at 28 and 20 °C, respectively. This shorter shelf life was mainly due to wilting caused by high weight loss, especially at higher temperatures. …

Filtered Genome Of Commercial Philippine Varieties Of Sugarcane (Saccharum Officinarum L.) For The Characterization And Identification Of Ssrs Associated With Resistance To Philippine Downy Mildew (Peronosclerospora Philippinensis), Antonio G. Lalusin, Jhun Lawrence S. Rasco

The Philippine Agricultural Scientist

Sugarcane is a major global source of sugar, with total production reaching 1.89 billion t. Although the Philippines produces about 1.85 million t of sugarcane annually, yields are limited by downy mildew and smut. Developing varieties resistant to these pathogens is the most economical and practical approach to mitigating losses from these biotic stresses. In this study, SSRs related to disease resistance were developed through Next-Generation Sequencing (NGS) of the filtered genomes of sugarcane varieties with known phenotypic responses to downy mildew. Two assemblies based on minimum contig lengths (450 and 900 bp) were performed using SoapDeNovo2. The 900-bp assembly …

Marker-Assisted Identification Of Hybrids In Polyembryonic ‘Carabao’ Mango (Mangifera Indica L.) Breeding In The Philippines, John Edward L. Felipe, Kyla Andrea G. Mendoza, Benjamin Christian J. Esguerra, Carolyn E. Alcasid, Gino R. Hernandez, Eureka Teresa M. Ocampo

The Philippine Agricultural Scientist

Varietal improvement of the Philippine ‘Carabao’ mango (Mangifera indica L.) through conventional breeding is constrained by polyembryony, which makes it difficult to distinguish zygotic hybrids from nucellar seedlings at early developmental stages. This study evaluated the utility of simple sequence repeat (SSR) markers for early and accurate identification of hybrids in polyembryonic ‘Carabao’ mango crosses. Genomic DNA was isolated from 24 parental accessions and 61 putative hybrid seedlings using a modified CTAB protocol that yielded DNA suitable for PCR-based marker analysis. Eighty-one SSR markers were screened across 29 parental combinations, of which 64 markers (79.0%) were polymorphic in at …

Effect Of Leaf Harvesting Frequency On Cassava Leaf Production And Tuber Yield Of Binulak, Lakan 1 (Upl Cv-2), And Sultan 6 (Nsic 2003 Cv-25), Fides Marciana Z. Tambalo, Rosa Buena A. Capuno, Hiyasmin Rose L. Benzon, Jayson F. Garcia, Lizette Sahar N. Arcillas, Rona Joy C. Tud

The Philippine Agricultural Scientist

Cassava (Manihot esculenta Crantz) is a vital staple crop in many developing countries, valued for its adaptability and dual-purpose use of roots and leaves. This study investigated the effects of leaf harvesting frequency on the leaf and tuber yields of 3 locally grown cassava varieties: Binulak, Lakan 1, and Sultan 6. The experiment followed a split plot in a Randomized Complete Block Design with 4 treatments varying in leaf harvesting frequency and initiation. Cassava leaves were harvested at 4, 6, 8, or 10 mo after planting (MAP), and tubers were harvested at 10 MAP. Results indicated that leaf yield …

Growth And Yield Of Rice (Oryza Sativa L.) Under Different Irrigation Methods In Transplanted And Direct-Seeded Systems, Wang Guirui, Crisanta S. Bueno

The Philippine Agricultural Scientist

In the face of climate change and socioeconomic transformation, there is an urgent need to save energy and enhance rice production. Direct-seeded rice (DSR) is a viable alternative to transplanted rice due to reduced water and labor requirements, potentially achieving comparable or higher yields with reduced inputs. This study was conducted in the 2025 dry and wet seasons in Los Baños, Philippines, using a 2-factorial randomized complete block design with 4 replications. The first factor was the 2 rice varieties NSIC Rc 506 (Tubigan 41, V1) and NSIC Rc 160 (Tubigan 14, V2), and the second factor was cultural management, …

In Vitro Assessment Of The Reproductive Biology Of Sweet Potato Weevil, Cylas Formicarius (Fabricius) (Coleoptera: Brentidae) Among Commonly Grown Sweet Potato Cultivars, Jerah Mystica Novenario, Flor A. Ceballo-Alcantara

The Philippine Agricultural Scientist

The sweet potato weevil, Cylas formicarius (Fabricius), is a devastating pest of sweet potato, Ipomoea batatas (L.) Lam., with a specific point of damage at the tuber where eggs are oviposited, and voracious larvae feed. Farmers in Tarlac province in the Philippines claim that a specific cultivar is highly infested by the pest, suggesting that other cultivars may not be susceptible to the pest damage. This study aimed to determine the reproductive biology of the weevil across 3 sweet potato cultivars (Inubi, Super Bureau, and Bureau) frequently grown in Central Luzon. Since the weevils are nocturnal, behavioral observations were conducted …

Part I: Drip Tape Irrigation For Cut Flowers, Alex Rodriguez, Melanie Stock, James Frisby, Burdette Barker

All Current Publications

Drip irrigation can be the most efficient method for delivering water and has the added benefit of keeping moisture off foliage and blooms of cut flowers. This fact sheet is the first in a series of irrigation fact sheets for cut flowers. It provides a step-by-step guide to the initial selection and installation of a surface drip tape irrigation system. Descriptions of and considerations for common components, setup, management, and repair are discussed. While this content may apply to other horticultural and garden plants, this fact sheet was developed for cut flower crops and growers. We recommend USU Extension resources …

Blue Carbon Stocks, Accumulation Rates And Knowledge Gaps In Africa, Janine B. Adams, Pattrick, Pere Masqué, Dennis Adotey, Elsheikh Bashir Ali, Abdelgadir Bashir Mohamed Awatif, Mohamed Fathi Ben Hamouda, Moncef Benmansour, Joseph F. Charles, Jerome Harlay, Lucienne Human, Linet Kiteresi Imbayi, Rashid Omari Ismail, Anesu Machite, Nezha Mejjad, Athi N. Mfikili, Ndanu Mumo, Maurice Ndeye, Wilfried Essowè Panassa, Issa Sakho, Suleiman Suleiman, Vanessa Hatje

Research outputs 2022 to 2026

Blue carbon ecosystems (BCEs), including mangroves, salt marshes, and seagrasses, play a critical role in climate mitigation due to their high carbon sequestration capacity. Despite Africa's extensive and diverse coastal ecosystems, continent-wide assessments of blue carbon stocks and accumulation rates remain scarce. Here, we synthesized blue carbon data from 87 publications (January 1993 - March 2026) to evaluate the current state of knowledge and regional variability. Our analysis reveals marked regional heterogeneity in sediment organic carbon (SOC) stocks across Africa, reflecting both ecological variability and methodological differences among studies. Normalised to a sediment depth of 1 m, median SOC stocks …

Sporadic Appetites: Unearthing The Fungal Diets Of Two Mycophagous Mammals Across An Australian Climate Gradient, Rebecca J. Quah, Saul J. Cowen, Robert A. Davis, Harriet R. Mills, Anna J.M. Hopkins

Research outputs 2022 to 2026

Translocating threatened ecosystem engineers may offer the dual benefit of contributing to species conservation and ecosystem restoration. Boodies (burrowing bettong; Bettongia lesueur) and woylies (brush-tailed bettong; Bettongia ogilbyi) are threatened mycophagous marsupials known for their crucial role in ecosystem health through fungal dispersal and bioturbation. As part of restoration efforts across Australia, these bettong species are frequently targeted for translocations, where a better understanding of their fungal dietary requirements is essential for ensuring their resource requirements are met and in predicting their ecological contributions to recipient ecosystems. Here, we used DNA metabarcoding to study the fungal diets of boodies and …

A Predictive Coding Account Of Spatial Working Memory Following Prophylactic Levetiracetam Administration Prior To Traumatic Brain Injury, Omeima Mutwali

Dissertations, Theses, and Capstone Projects

Traumatic brain injury (TBI) symptom prevention and remediation is an important area of research that would benefit vulnerable groups, including active-duty and veteran soldiers. These patients can sustain penetrative forces in fields of combat or in training, which result in focal lesions that trigger inflammatory and degenerative processes in the brain. Both primary and secondary injuries are associated with changes to cognition, behavior and affective state. This disease poses increased risk of epileptogenesis, as well. Given these outcomes, prior research has evaluated levetiracetam (LEV) as a prophylactic treatment for seizures, cognitive deficits and negative emotionality. LEV acts as a presynaptic …

Immunomodulatory And Signaling Molecules From Plant-Associated Bacteria: Toll-Like Receptor 4 Agonist Adjuvants And Diketopiperazine-Mediated Communication, Marian Romaine

Dissertations, Theses, and Capstone Projects

Medicinal plants and their associated microbiomes constitute a rich source of bioactive natural products with applications in immunotherapy and microbial ecology. Herbal formulations have long been valued for safe immune enhancement, while bacterial signaling molecules govern community behaviors critical to pathogenesis, symbiosis, and environmental processes. Bacterial lipopolysaccharides (LPS) from plant-associated Gram-negative bacteria have emerged as potent TLR4 agonists, yet their endotoxic potential limits direct use, and diketopiperazines (DKPs) serve as versatile quorum-sensing mediators capable of modulating biofilms in mixed microbial systems.

The work in this thesis comprises two independent but complementary research strands. The first strand pursued the engineering of …

Identifying Textual Predictors Of Early Termination In Clinical Trials In Medicine: An Explainable Machine-Learning Study, Rohan Ramnarain

Dissertations, Theses, and Capstone Projects

About one in five clinical trials in medicine ends early, wasting valuable resources and reducing the evidence available for developing life-saving medical treatments. This project uses a method called Trial2Vec, which is a self-supervised machine-learning method that converts clinical trial documents into dense numerical representations that capture their key design and clinical characteristics, to turn each proposed clinical trial’s written protocol into a compact numerical profile (a process referred to as embedding). These profiles are then paired with a predictive machine learning models to identify the words and phrases in the trial documents that can signal a higher risk of …

Neural Correlates Of Recognition Memory And Metamemory In Breast Cancer Survivors: An Event-Related Potential Study, Dishari Zaman Azad

Dissertations, Theses, and Capstone Projects

Breast cancer survivors (BCS) often report noticeable cognitive difficulties despite showing limited impairment on standardized neuropsychological tests. Some have theorized that this is simply an insensitivity of standardized testing to subtle cognitive changes (test-insensitivity hypothesis), whereas others have suggested there are early neural changes that are detected by patients but precede detection by these tests (early signal hypothesis) or that when they achieve normal performance, it is through saliently effortful compensatory processes (compensation hypothesis). The present study tested these theories by assessing metamemory and recognition memory retrieval in BCS and non-cancer controls (NCC) using both behavioral and event-related potential (ERP) …

Reducing The Complexity Of The Experimental Design Attenuates Trait-Level Effects In Threat Safety Discrimination Learning, Justin M. Lazzarino

Dissertations, Theses, and Capstone Projects

Trait measures of negative emotionality have sometimes been shown to play a role in shaping threat learning, but findings are mixed. For example, Johnson et al (2023) showed that the inhibitory and prospective subscales of the Intolerance for Uncertainty Scale (IUS) were associated with diminished and enhanced threat-safety discrimination, respectively, during the acquisition phase of a Pavlovian fear conditioning task. This finding was subsequently replicated in an independent sample (Kinney-Petrucha, 2024, unpublished). However, these findings and other trait-level fear acquisition effects have not been consistently observed in the broader fear learning literature. Variation in the complexity of or uncertainty inherent …

Ldm-Morph: Latent Diffusion Model Guided Deformable Image Registration, Jiong Wu, Tinsu Pan, Kuang Gong

Faculty, Staff and Student Publications

Deformable image registration plays an essential role in various medical image tasks. Existing deep learning-based deformable registration frameworks primarily utilize convolutional neural networks (CNNs) or Transformers to learn features to predict the deformations. However, the lack of semantic information in the learned features limits the registration performance. Furthermore, the similarity metric of the loss function is often evaluated only in the pixel space, which ignores the matching of high-level anatomical features and can lead to deformation folding. To address these issues, in this work, we proposed LDM-Morph, an unsupervised deformable registration algorithm for medical image registration. LDM-Morph integrated features extracted …

Nlrp3 Inflammasome: A Link Between Systemic Infection And Alzheimer’S Disease, Tatiana Barichello, Felipe Dal-Pizzol

Faculty, Staff and Student Publications

No abstract provided.

Toward A Synthetic Theory Of Tolerance For Carnivores: Learning From A Half-Century Of Research On Attitudes Toward Wolves, Jeremy T. Bruskotter, John A. Vucetich, Lisa Naughton-Treves, José Vicente López-Bao, Benjamin Ghasemi, Nicole D. Sintov, Tara L. Teel, Neil H. Carter, L. Mark Elbroch, Adrian Treves

Michigan Tech Publications

Human intolerance is a critical factor limiting both the distributions and populations of large carnivores. Using gray wolves as a case study, we synthesize a half-century of scholarship with the aims of clarifying the conceptual foundations of “tolerance” and integrating insights from across the social sciences. Specifically, we review longitudinal studies of attitudes toward wolves and show how trends vary across the populations examined. We then identify and discuss three complementary theories that help explain variation in tolerance across individuals, social groups, and societies: (1) Risk–benefit theories illuminate how perceptions of risks, benefits, and controllability shape individuals’ tolerance of carnivores; …

Estimates Of Insecticide Performance Against Selected Insect Pests Of Cotton, Corn, Sorghum, And Soybeans Across The Cotton Producing States Of The United States, 2025, D. Cook, S. Graham, B. Thrash, N. Bateman, G. Studebaker, I. Esquivel, P. Roberts, D. Buntin, D. D. Kerns, J. Villegas, W. D. Crow, T. B. Towles, C. Floyd, D. Reisig, A. Farris, J. K. Greene, F. Reay-Jones, S. Brown, D. L. Kerns, S. Vyavhare, T. Mays, K. Siders, B. Easterling, S. Biles, T. Bryant

Midsouth Entomologist

Annually the members of the National Cotton States Arthropod Pest Management Working Group estimate insecticide and insect trait performance against selected insect pests in cotton, corn, sorghum, and soybeans across the cotton growing states.  These estimates are based on commonly used/recommended rates and from observations collected through field experiences and replicated research trials.  Results are summarized by region including the Southeast, MidSouth, West, and across all regions (U.S.).  States comprising regions include Alabama, Florida, Georgia, North Carolina, South Carolina, and Virginia (Southeast); Arkansas, Louisiana, Mississippi, Missouri, and Tennessee (Mid-South); and Arizona, California, Kansas, New Mexico, Oklahoma, and Texas (West). Not …