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Screening For Chloroplast Inner Envelope-Thylakoid Membrane Contact Site Proteins, Evan W. Labrant

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Most life on Earth is dependent upon the capture of solar energy and subsequent fixation of carbon. In members of the Archaeplastida lineage these biological processes take place in semi-autonomous organelles called chloroplasts. Chloroplasts are bounded by a double membrane envelope and contain the photosynthetic membrane system, thylakoid membranes, where light capture takes place. While a great deal is known about how thylakoid lipids are synthesized and protein complexes therein are properly maintained, very little is known regarding the processes by which lipids are transported to thylakoids which lack de novo glycerolipid synthesis. We have worked to identify candidate proteins …

Spatial Ecology And Predator–Prey Interactions Of Mountain Lions In California's San Francisco North Bay, Jacob A. Harvey

School of Natural Resources: Dissertations, Theses, and Student Research

Understanding spatial ecology and predator-prey interactions are central to wildlife ecology and conservation. We tracked mountain lions with GPS telemetry to evaluate space use, predator-prey interactions, and resource selection in California’s San Francisco North Bay, USA. In Chapter 1, we evaluated the influence of human disturbance on home range size, prey composition, and kill rates on black-tailed deer (Odocoileus hemionus columbianus) across an urban-rural gradient. Both males and females increased home range size with increasing development at low to moderate levels of development, but female home range size stabilized across greater proportions of development while male home range …

Treating The Black Fever: Evaluating Combination Chemotherapy For Leishmania Donovani, Robert Frank Mickatavage

Biochemistry and Molecular Biology

Visceral leishmaniasis (VL) is a neglected tropical disease (NTD) endemic to Africa, Asia, and the Americas, caused by the parasite L. donovani and spread by the Phlebotomine sandfly. If left untreated, VL is almost always fatal, bearing a mortality rate of over 95%. Many individuals within endemic regions are often too poor to afford treatment, and the financial burden of current treatments may only exacerbate their poverty. Antimonials and more modern treatments display varying effectiveness, but are nonetheless toxic to the host, commonly inducing hepatotoxicity, nephrotoxicity, and renal failure. The development of more effective and safer treatments is crucial, particularly …

Biological Reduction Of Perchlorate In Martian Regolith Simulant Using Azospira Oryzae, Brianna Bernhardt

Honors Program: Senior Projects (Public)

Establishing a sustainable human presence on Mars will require in-situ resource utilization (ISRU) to reduce costly and inefficient resupply missions. Despite containing many of the requirements for agriculture, Martian regolith is contaminated with toxic levels of perchlorate (ClO₄^-), threatening human health and agricultural success. Biological remediation using perchlorate-reducing bacteria offers a promising approach to address these challenges. This study investigated the perchlorate-reducing ability of Azospira oryzae, a facultative anaerobe capable of converting ClO₄^- to chloride (Cl^-) through dissimilatory respiration. A. oryzae was cultured in Martian regolith simulant (MGS-1) amended with 0.0%, 0.5%, …

Hypoxia Induced Ribosomal Rna Fragmentation Mediated By Rnase L, Vanessa Kristina Pizutelli, Dimitri G Pestov

Rowan-Virtua Research Day

Ischemic injury contributes to a range of global pathologies. Ischemia/Reperfusion Injury (IRI) is a paradoxical phenomenon that involves an initial restriction of blood flow followed by a sudden restoration of perfusion. This type of injury takes place in conditions such as myocardial infarction, acute kidney disease, and ischemic stroke and often leads to cellular death. Additionally, IRI exacerbates post-surgical outcomes and plays a role in graft dysfunction and transplant rejection. Despite efforts to develop therapies targeting known IRI pathways, clinical trials have largely been unsuccessful, underscoring the need for alternative mechanisms and biomarkers associated with IRI-induced apoptosis. Reactive oxygen species …

Investigating The Effects Of Prenatal E-Cigarette Exposure On Postnatal Liver Histology, Emma Mcclellan

College of Arts & Sciences Senior Theses

The electronic cigarette (e-cigarette) entered the American market in the mid-2000s and quickly became popular. This product poses a significant threat to youth with 1.63 million students reporting use in 2024. Adverse health effects to different organs are well known. The liver is less studied, and despite its role in detoxification of e-cigarette chemicals, is a target of injury. Unlike the known effects of cigarettes and nicotine on the liver from adult or prenatal exposure, effects of prenatal exposure to e-cigarettes on liver remain to be defined. The current study investigated the effects of prenatal exposure of e-cigarettes on liver …

Understanding The Properties Of Repair Protein P26 For Dry-State Preservation Of Biological Materials., Hannah Skaggs

College of Arts & Sciences Senior Theses

The preservation of complex biological materials in the frozen state has been well established and plays a critical role in the advancement of clinical applications and the pharmaceutical industry. Cryopreservation of complex biological materials has several clinical applications, including vaccine preservation, bone marrow transplants, cell therapeutics, and increasing the shelf life of red blood cells (RBCs) for transfusion. However, many challenges are present, including the use of toxic protective agents and the financial burden of maintaining extremely low temperatures between 193.15 and – 77.6 K (Parihar, Kumar et al. 2023). Lyophilization, or freeze-drying, presents an opportunity to mitigate such challenges. …

Health Impacts Of Remote Work On Women Aged 30-40: A Study Of Physical And Mental Well-Being, Dakota J. Miller

Doctoral Dissertations and Projects

The purpose of this phenomenological study is to understand the effects of remote work on employees' physical, psychological, and social well-being. As remote work becomes more common, understanding its impact on health and productivity is essential. This study asks: How does remote work affect employees’ well-being across these dimensions?

Guided by the Job Demands-Resources (JD-R) model (Bakker & Demerouti, 2007), this study examines how remote work influences well-being through the balance of job demands (e.g., workload, isolation) and resources (e.g., autonomy, flexibility).

Using a mixed-methods approach, data were collected from 22 remote workers via surveys, semi-structured interviews, and observations. Survey …

The Development Of Magmas Inhibition As A Potential Therapeutic Target In Temozolomide Resistant Glioma, Jennifer Duyen Tran

Electronic Theses, Projects, and Dissertations

Glioblastoma (GBM) is a highly aggressive brain tumor that remains a significant challenge in neuro-oncology today. Approximately 90% of GBM patients experience tumor recurrence within one to two years of diagnosis. Therefore, due to its high resistance to conventional therapies, new treatment strategies are urgently needed. The current standard of care for GBM is the chemotherapeutic Temozolomide (TMZ). TMZ is an oral alkylating agent, it functions by delivering a methyl group to purine bases. The development of resistance to TMZ is partially regulated by the DNA repair enzyme O6- methylguanine-DNA methyltransferase (MGMT). Despite the potential shown by MGMT promoter methylation …

Engineering An In Vitro Hipsc-Derived Cardiac Tissue Construct For Regenerative Medicine Applications, Larry Mendoza

Electronic Theses, Projects, and Dissertations

Cardiovascular disease is the leading cause of mortality across the world with invasive surgeries and pharmaceutical intervention commonly associated with urgent care. Moreover, congenital, progressive, and hereditary heart diseases rely on many forms of medical prevention and intervention (pharmaceuticals, x-rays, bloodwork, etc.). Developing a three-dimensional (3D) cardiac tissue engineered in vitro model to study human cardiac physiology can revolutionize biomedical research. The purpose of this research is to optimize natural & synthetic biomaterials to fuse cardiac stem cells and synthesize a 3D-printed in vitro model for disease modeling, drug delivery, and regenerative medicine. Natural biopolymers needed for such innovations are …

Exploring Factors That Contribute To Poverty Among Singleparent Households Headed By Latinas: A Qualitative Study, Jeffrey M. Balencia

Electronic Theses, Projects, and Dissertations

Background: Despite the new strategies and programs being developed and implemented, poverty still finds itself at a continuous increase yearly (Banovcinova et al., 2014). Families have been found to be the most susceptible group compared to everyone else due to the many factors they face that can affect them. By using the information provided by other articles, gaps identified is there are lack of studies on the factors that contribute to poverty among singleparent households headed by Latinas. Objective: This exploratory study aims to identify contributing factors to poverty among single-parent households headed by Latinas. Method: Qualitative data will be …

Growth Of Methanogens Using Pyrite As An Energy Source: Implications For Life On Mars, Mckenzie K. Ragan

Biological Sciences Undergraduate Honors Theses

The search for life beyond Earth has been the motivating factor for many scientist’s research in the past and currently. Specifically, the efforts have largely been focused on Mars. Mars exhibits qualities that are similar to the life-harboring characteristics of Earth, creating the possibility for life to exist on Mars. Mars’ subsurface conditions may be ideal for specific microorganisms to thrive, providing a haven away from the harsh surface conditions (Mancinelli, 2000). It is known that one of the most important elements to support life, H₂O is found in the subsurface of Mars, along with an atmosphere lacking …

Metabolic Responses Of Adipose-Derived Stem Cells In Collagen I Hydrogels, Caroline R. King

Biological Sciences Undergraduate Honors Theses

Peripheral nerve injury affects approximately 44 in 1 million people in the United States every year and can lead to incomplete nerve recovery and loss of motor and sensory function. A significant amount of energy is required for nerve injury repair. A lack of energy allocation to the injury site hinders repair. Current treatments include hollow nerve guidance conduits, decellularized nerve grafts, and autografts. However, they are limited by factors such as donor site morbidity and sustained immunosuppressive treatments. Using three-dimensional collagen I hydrogels laden with adipose-derived stem cells (ASCs) can assist in neural regeneration. Three-dimensional collagen scaffolds aim to …

The Relationship Between Oxidative Stress And Partner Opposition In Conflict Resolution, Jenna Thomas

Biological Sciences Undergraduate Honors Theses

Given the inevitability of conflict in romantic relationships, understanding its biological impact is crucial for developing conflict resolution strategies that promote physical health. While many studies highlight relationship conflict’s negative effects on bodily systems, few examine how specific facets of conflict, such as opposition, impact the body. Partner opposition may contribute to oxidative stress, a biological marker associated with poor physical health, by activating the amygdala. This study investigated the association between partner opposition and oxidative stress in 126 couples expecting their first child. Participants attended a lab session where problem-solving discussions were recorded to assess oppositional behavior and urine …

Towards The Design Of A Super Fgf1-Fgf10 Chimera, Megan Brown, Suresh Thallapuranam

Biological Sciences Undergraduate Honors Theses

The Fibroblast Growth Factor family consists of 23 different fibroblast growth factors (FGFs) that are each involved in various cellular processes, including cell proliferation and tissue repair. Fibroblast growth factor receptors (FGFR) are different tyrosine kinase receptors. There are four FGFRs in the human body, each binding to different combinations of FGFs. Fibroblast growth factor 1 (FGF1) is the only FGF that can bind with all four types of fibroblast growth factor receptors. Therefore, it is the most powerful mitogen. However, FGF1 has low thermodynamic stability under the physiological conditions. Prior work in the Kumar lab has constructed several points …

A Nano-Scale Approach To Controlled Apoptosis In Brain Cancer Through Magneto-Mechanical Actuation, Sakura Rieck

Biological Sciences Undergraduate Honors Theses

In this study, we investigate the effects of cell therapy and magneto-mechanical actuation (MMA) to treat glioblastoma (U87). MMA approach employs super low-frequency alternating magnetic fields (AMF) to actuate intracellular PEGylated superparamagnetic iron oxide nanoparticles (PEG-SPIONs). Magnetic forces are translated into mechanical agitation on PEG-SPIONs, which can disrupt key cellular components. We explored two ways in which the MMA approach can be used to combat cancer growth. First, we investigated MMA directly in U87 cells. Preliminary observations indicate that PEG-SPIONs are intracellularly taken up by the U87 cells via micropinocytosis. Cell-counting kit-8 toxicity assays revealed a cytotoxic effect of MMA …

Immune Function Modulation By Temperature On Isolated Rainbow Trout Macrophages, Abby Hunter

Biological Sciences Undergraduate Honors Theses

Fever is an evolutionary mechanism that enhances immune function, yet the molecular and metabolic responses to fever temperatures in ectothermic species remain poorly understood. In this study, we investigated how fever temperatures (19° C) influence macrophage function and metabolic activity in rainbow trout (Oncorhynchus mykiss), rather than normal temperatures (16° C). Using a rainbow trout monocytic cell line, RTS11, and primary head kidney-derived macrophages (HKCs), we examined the effects of fever temperatures on nitric oxide (NO) production, gene expression, protein synthesis, and energy metabolism. We found that fever temperatures increased NO production in both cell types, with further …

Optimization And Personalization Of Fitness Routines Using Mathematical Models, Tyson M. Kerr

Theses/Capstones/Creative Projects

This project aims to develop a mathematical model for generating personalized workout plans tailored to individual fitness goals, preferences, and constraints. By leveraging optimization techniques such as linear programming and genetic algorithms, the model will address key questions, including how to maximize efficiency and consistency in workout plans and which methodologies are best suited for specific fitness objectives. The model involves data collection on user inputs and exercise attributes, defining objective functions for different goals, and integrating constraints like session duration. The implementation will utilize the Python library PuLP to prototype the model, alongside a user-friendly interface for input and …

What’S The Best Way To Store Toxic 1080 Baits?, Heather M. Crawford, Ricarda Fenske, Gerard Smith, Teen Ryan, Jamie (Frog) Taylor, Daniel Carlisle, Debbie Dowden, Dean Butcher, Tracey L. Kreplins, James Miller, Malcolm S. Kennedy, Patricia A. Fleming

Biosecurity Research Articles

Being able to store toxic baits could allow livestock producers to target ‘hot spots’ of predator activity, supplementing or even replacing broadscale baiting, therefore avoiding potential risk of bait-resistant populations. We compared 1080 dose recovered from dried meat baits (DMB; camel, horse and kangaroo) and sausage baits stored by different methods (shed, locked transport box, freezer, cryo-vacuumed) to identify whether they were still lethal, and address concern that freezing/thawing could result in loss of the water-soluble 1080 toxicant. We developed a bait collection method to halt microbial activity (preserving 1080 dose), al-lowing collection of baits manufactured under field conditions by …

Decoding Bacterial Resilience: Srnas And Sigma Factors In Stress Adaptation And Persistence Of Salmonella, Anita Nguyen

Honors Theses

Small RNAs (sRNAs) are noncoding RNA molecules in bacteria that function primarily to regulate gene expression, including those associated with stress. The Borchert Lab has identified 173 sRNAs and > 500 sRNAs that are responsive to desiccation and carbon starvation (c-starvation), respectively. Prokaryotic transcription involves an RNA Polymerase (RNAP) that transcribes DNA into RNA. RNAP involves sigma factors, which recognize promoters for the initial steps of RNA synthesis. The Borchert Lab has determined that there are significant overlaps between sRNAs expressed in cells subjected to both short-term durations and long-term durations of carbon starvation. Salmonella enterica serovars can have outbreaks associated …

Toxicity And Biodegradability Of Novel Boronium Vs Conventional Ammonium-Based Antimicrobial Compounds In Wastewater Treatment Systems, Noor Shalan

Honors Theses

Quaternary ammonium compounds (QACs) are highly effective as disinfectants, herbicides, and pesticides; thus, overuse causes elevated levels of residual toxicity in domestic and industrial wastewater. QACs can be toxic to essential bacteria breaking down pollutants in wastewater treatment plants (WWTPs) and can remain untreated in effluent, harming the environment, and contributing to antibiotic resistance, posing risks to human health. Novel boronium-based antimicrobial compounds have demonstrated efficacy in eliminating bacteria, fungi, and viruses. If the boronium compounds exhibit lower residual toxicity, they could offer a promising alternative to QACs. Because these compounds are still in development, their potential toxicity to the …

Negotiating Food Security, Maria Cudowska

Journal of Food Law & Policy

In the United States and worldwide, nutrition and food emerge as both high-profile public policy targets and as fundamental aspects of the right to self-determination. This Article examines how national security impacts food security in the United States. It explores conflicts and synergies between municipal, state, and federal law developments related to the right to food and investigates recent developments in how those commitments have been negotiated. The challenge and nebulous justiciability of the right to food can be in part attributed to existing global and national systems, which include supply chains, welfare programs, and foreign investment in the U.S. …

Bang!: Real-Time Measurements And Transcriptomics Of Metabolic Reprogramming In Activated Macrophages At Fever Temperature, Kenneth Howard Taylor

Graduate Theses and Dissertations

We investigated the real-time metabolic rates of activated macrophage cell lines derived from mouse, chicken and rainbow trout. Each species showed a different kinetic signature with metabolic rates accelerating under fever conditions specific to each organism. Upon activation mouse macrophages increased their rate of glycolysis early and then a later reprogramming phase occurred with a dramatic decrease in oxidative phosphorylation (OXPHOS) accompanied by a reciprocal second increase in glycolytic rates. Chicken macrophages showed an initial increase in both glycolytic and OXPHOS rates. The late drop OXPHOS rates also occurred in chicken however there was no reprogramming that occurred as glycolytic …

Repair Through Recycling, Emma Murdock, Karl Aspelund

Senior Honors Projects

Repair Through Recycling is an instructional website I developed to encourage people to mend their garments rather than throw them away.I see this as a way to help address the growing issue of textile waste, where millions of garments are discarded each year. Many of these are made from synthetic materials that do not break down, contributing significantly to environmental pollution. This project features step-by-step instructional videos I created to teach the basics of mending, skills that are no longer commonly taught. These tutorials cover foundational techniques such as threading a needle and hand-stitching torn seams. The website also includes …

Understanding The Role Of Sabp2-Interacting Proteins Sip432: A Premnaspirodiene Oxygenase Enzyme In Stress Signaling, Cristiana F. Martinez

Undergraduate Honors Theses

This study focuses on the characterization of a SABP2-interacting protein (SIP)-432. SIP432 is a putative premnaspirodiene oxygenase-like P450 enzyme. Premnaspirodiene is a 15-carbon compound that can be converted into antimicrobial compounds by a hydroxylation reaction. The interaction of SIP432 with SABP2, a critical component of salicylic acid-mediated plant immunity, implies a role for SIP432 in plant stress signaling. This study uses the T-DNA knockout mutant of Arabidopsis thaliana SIP432 (homolog of NtSIP432) to help understand its role in abiotic and biotic stress responses. Plants were subjected to abiotic and biotic stress to understand their role in stress response pathways. Gene …

Impact Of Temperature And Microbial Infection On The Honey Bee Hemocytes, Michael E. Oeth

Master's Theses

Introduction

Honey bees (Apis mellifera) rely on hemocytes for immunity, wound healing, and hemolymph homeostasis. While 32°C reflects optimal hive conditions, suboptimal temperatures (22°C) and stressors like pathogens (Varroa destructor, bacteria) or pesticides impair hemocyte function. Using clodronate liposomes (CLD) to deplete hemocytes, we assessed how immune suppression interacts with these stressors.

Methods

Newly emerged (5-day-old) and older (15-day-old) bees were assigned to: CLD, control liposomes (LP), PBS, injection wound, or no treatment. Cohorts were exposed to 32°C (optimal) or 22°C (stressful for non-immunosuppressed bees). Fifteen-day-old bees were challenged with Escherichia coli or Staphylococcus aureus. Survival, hemolymph volume, and hemocyte …

Movement Ecology And Trophic Dynamics In The Northern Gulf Of Mexico: Implications For Fisheries Management, Calvin Chee

Master's Theses

The northern Gulf of Mexico (nGOM) is a diverse and productive region for living marine resources. The region supports lucrative commercial and recreational fisheries ranging from low-trophic-level species, such as penaeid shrimps and forage fishes, to high-trophic-level predators (e.g. Yellowfin Tuna). This thesis contributes to the region’s ecological knowledge, with the primary aim of enhancing management efforts and providing direct management advice to two important fisheries. In Chapter 1, we develop a traditional per-recruit model for Southern Flounder, as well as a spatiotemporally integrated per-recruit model that incorporates the spatial distribution of fishing effort and the stock’s movement ecology. Fish …

Investigating The Role Of Ilv1 On Stress Response In Saccharomyces Cerevisiae, Luke H. Beachboard

Honors Theses

Saccharomyces cerevisiae, a model organism within molecular genetics, is also known for its broad role within baking, brewing, biofuel, and pharmaceutical industries. An unpublished study at The University of Tennessee at Chattanooga observed decreased cell viability in an ILV1 Knockout strain of S. cerevisiae when exposed to environmental stressors. A subsequent study at The University of Tennessee at Chattanooga found expression levels of the candidate genes to be significantly altered within the ILV1 Knockout strain relative to the BY4743 Wildtype strain, demonstrating the reality of a pleiotropic role within ILV1. Now, this study aims to further investigate this peculiar characteristic …

Fc Gamma Receptors Facilitate Antigenic Modulation Of Lilrb4 And Function As Predictive Biomarkers In Acute Monocytic Leukemia, Joshua Morse

Dissertations and Theses (Open Access)

Acute monocytic leukemia (monocytic AML) is a subtype of AML marked by a proliferation of abnormal monoblasts. This subtype represents approximately 10% of AML cases. The prognosis of monocytic AML is poor, with a 5-year survival of ~30%. Most patients are diagnosed at an age when they are unlikely to survive first-line non-targeted cytotoxic chemotherapy as a bridge to hematopoietic stem cell transplant (HSCT). Even patients who achieve remission commonly relapse. This population of patients would greatly benefit from precision-targeted therapies but currently there are none approved for monocytic AML.

Leukocyte immunoglobulin-like receptor B4 (LILRB4) is an immune checkpoint expressed …

Expanding Inducible Epithelial Resistance Against Pneumonia: Novel Virus, Novel Receptor, Michael Longmire

Dissertations and Theses (Open Access)

Pneumonia is the leading infectious cause of death worldwide and presents a continuing risk among immunocompromised patients. Our work has been focused for many years on the phenomenon of inducible epithelial resistance, where activation of the innate immune response in the airway epithelium is necessary and sufficient to produce a pathogen-killing but self-protective environment to prevent severe disease. Inducible resistance is pathogen-agnostic and has been demonstrated against an array of respiratory infections. We achieve this using a combination of pattern recognition receptor agonists – Pam2CSK4 and ODN M362 being the current formulation – which produce synergistic levels of pathogen reduction …