Digital Commons Network^™

Determining Cave Presence And Diet Variation Of The Ozark Big-Eared Bat (Corynorhinus Townsendii Ingens) From Guano Dna, Lark E. Sybrant

ATU Theses and Dissertations 2021 - Present

The Ozark big-eared bat (Corynorhinus townsendii ingens; OBEB) is federally endangered in Arkansas, where it persists in a few small, geographically restricted populations within the Ozark National Forest. Although the region contains many caves that appear suitable for OBEB, expanded survey efforts are needed to locate additional roost sites for monitoring and protection. Effective conservation also requires a clear understanding of their distribution and diet. Traditional cave surveys can be disruptive and often miss cryptic species, and earlier diet studies based on manually sorting prey remains provided only coarse taxonomic resolution and overlooked soft‑bodied insects. To address these …

Producing Oral Medicines In Lettuce To Fight Chronic Diseases, Carlos E. Balmaceda, Megha Goyal, Anubhav Pal

Create@State

Chronic diseases, such as inflammatory bowel diseases, require patients’ commitment to their treatment, which can be challenging over time. Edible plants could help address this challenge by acting as living factories that produce a range of drugs, including medicinal proteins. Patients could eat the plants because their cells have a sturdy outer layer that protects and helps deliver the medicine. Lettuce is an example of a common vegetable that can serve this purpose. The main goal of this project is to develop a medicinal protein production and oral delivery system using lettuce plants. We will build a small version of …

The Legacy Of Lead: Lead Exposure's Harmful Effects And Its Concentration In Poc Communities, Layla Sophronia Barber

Student Theses 2015-Present

This thesis examines the disproportionate burden of lead exposure carried by low income, POC communities. The systemic nature of this problem is a symptom of a longstanding legacy of environmental injustice in the United States. Decades of federal neglect are reflected in the higher statistics of lead exposure and poisoning in predominantly black communities. While it is understood that lead exposure poses a serious threat to physical health and early cognitive development, there is a discouraging lack of urgency to remove the toxin from non-wealthy communities. The material covered by this thesis aims to identify and correct the discriminatory social …

Teacher Shortages In Arkansas Rural School Districts: Employed Teacher’S Perceptions Of The Impact On Their Effectiveness, Carloss Guess

ATU Theses and Dissertations 2021 - Present

ABSTRACT

TEACHER SHORTAGES IN ARKANSAS RURAL SCHOOL DISTRICTS: EMPLOYED TEACHERS’ PERCEPTIONS OF THE IMPACT

ON THEIR EFFECTIVENESS

Carloss Guess

Teacher shortages in rural school districts remain a persistent challenge that affects instructional quality, teacher workload, and professional sustainability. The purpose of this qualitative phenomenological study was to explore how teachers in rural Arkansas perceive the impact of staffing shortages on their instructional roles, workload, and professional well-being. Data were collected through semi-structured interviews with 10 K–12 teachers representing elementary, middle, and high schools and across varying career stages. Interview transcripts were analyzed using an inductive qualitative approach and the constant …

Debriefing In Emergency Departments And Intensive Care Units To Combat Compassion Fatigue, Madison N. Chiolino

ATU Theses and Dissertations 2021 - Present

Compassion fatigue can be associated with nurses working in increased stressful environments such as the Intensive Care Unit (ICU) and Emergency Room (ER).  There is a gap in healthcare facilities, where structured interventions like debriefing tools are not implemented to address compassion fatigue. The purpose of this study was to determine if implementing a debriefing tool in areas where nurses are placed in high stress scenarios such as the intensive care unit and emergency department can aid in combating compassion fatigue. A piloted quantitative pre-and post-survey intervention design was used. Data was collected using the ProQOL 5 and PEARLS debriefing …

Studying More, Not Less: Rethinking Test Anxiety In Undergraduate Biology Courses, Kailey E. Reeves

Honors Theses

This study investigates the relationships among test anxiety, study behaviors, and metacognitive evaluation in undergraduate biology courses. While prior research has established that study strategies and metacognition influence academic performance, less is known about how these factors interact with test anxiety in undergraduate Biology courses. Guided by the student approaches to learning (SAL) and metacognition frameworks, this study examines whether test anxiety is associated with the type and number of study strategies students use, as well as their ability to evaluate their own learning and preparedness. Using a convergent parallel mixed-methods design, data was collected from 205 students enrolled in …

Mechanisms Underlying Diversity In Bacterial Biofilms, Jacob David Holt

Dartmouth College Ph.D Dissertations

Bacteria commonly exist in natural environments as communities of multiple strains and species attached to surfaces and encased in an extracellular matrix of DNA, protein, and polysaccharides–termed biofilms. These biofilms contribute to diverse functions, from ocean carbon cycling via chitin degradation to pathogenic processes such as wound or implant colonization. The molecular mechanisms governing biofilm formation and composition have been well characterized in model pathogenic organisms, yet the extent to which aspects of biofilm formation contribute to the assembly and maintenance of diverse communities remains less well understood. Using microfluidics, confocal microscopy, and model biofilm-forming bacteria, this thesis details how …

Emaldi Ms And Oligonucleotide Analysis, Manoj Perera, Yipeng Yin, Reed Arneson, Fakhira Razzaq, Rishabh Awasthi, William Wittstock, Yinan Yuan, Shiyue Fang

Michigan Tech Publications

Enhanced matrix assisted laser desorption ionization mass spectrometry (eMALDI MS) refers to MALDI MS in which the efficacy of desorption and ionization is enhanced by heat, volatile species, or both, generated from chemical decomposition of additives in the sample of analyte under MALDI conditions. MALDI MS has been widely used for oligonucleotide (ON) analysis. However, two challenges, limited ability to analyze long ONs and low tolerance to trace salts, significantly restrict its applications. We recently proposed the ion pair thermal model for the gas phase ion formation mechanism of MALDI MS. This model predicts an exponential increase in ion yield …

A Doubly Stochastic Model Of Government Interventions To Preserve Ecosystems Services In The Context Of Large-Scale Industrial Agriculture, Karma Brame, Wendy Calderon, Kaylee Clark, Josh Hiller, Natalia Negrete

Spora: A Journal of Biomathematics

Deforestation, driven by industrial agriculture and cattle farming, has significantly impacted communities and ecosystems across the globe. In this paper, we develop a discrete-time Markov model to evaluate the effectiveness of market-based interventions, such as payments for ecosystem services (PES) and taxes, in addressing forest loss within the context of large-scale agriculture. Specifically, we focus on how commodity price variability influences deforestation decisions. To model these price fluctuations, we represent agricultural prices as geometric Brownian motion (GBM). By linking commodity price dynamics to land use transitions, our model aims to provide insight into how financial mechanisms can slow or stop …

Table Of Contents

Journal of the South Carolina Academy of Science

No abstract provided.

From Stranger To Self: The Role Of Familiarity In Modulating The N170 And N250 Erp Components, Tabish Gul

Dissertations

This study investigated how varying levels of face familiarity modulate the N170 and N250 event-related potential (ERP) components, two neural markers of face perception and recognition. While the N250 is widely considered familiarity-sensitive, the N170 has traditionally been linked to the structural encoding stage of face perception. However, recent research suggests that face familiarity may also influence N170 amplitude and latency. While most previous studies have compared up to three familiarity levels, the present study examined five levels of familiarity: own face, friend’s face, famous face, experimentally familiar face, and unfamiliar face. Twenty-six participants viewed face images while completing a …

Functionalized Nanodiamonds As Binding Platforms For Single-Stranded Dna, Mallory A. Chapman

Honors Theses

Nanodiamonds (NDs) offer a promising platform for biomolecular applications due to their stability, biocompatibility, and three-dimensional structure. This study focused on developing a nanodiamond–DNA complex in which streptavidin-functionalized NDs would form a protective shell around biotinylated single-stranded DNA (ssDNA), creating a core–shell system like an “M&M” candy with DNA at the center and a protective coating on the outside. DNA has many uses in nanotechnology, including DNA origami, nanomachines, and drug delivery systems, but its degradation limits its practical use, making protective strategies essential.

ND–DNA conjugates were prepared using biotin–streptavidin interactions and analyzed using gel electrophoresis. Initial separation on agarose …

Oregon State Rank Assessment For Bedstraw Broomrape (Aphyllon Epigalium Ssp. Epigalium), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Bedstraw broomrape (Aphyllon epigalium ssp. epigalium) using NatureServe methodology, 2026.

Predicting And Decoding Allosteric Binding Sites Using Protein Language Models And Structure-Based Machine Learning: An Energy Landscape-Guided Explainable Ai Framework, Kamila Riedlová, Vít Skrhák, William G. Gatlin, Max Ludwick, Lucas Turano, Marian Novotný, David Hoksza, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

Computational prediction of allosteric binding sites in protein structures remains a persistent challenge, as these regulatory pockets evade detection by both sequence-based and structure-based algorithms. Both computational and physical origins of this predictive asymmetry remain insufficiently understood. In this study, we systematically examine the determinants of binding site predictability using a dual framework that integrates a fine-tuned protein language model and the structure-based method P2Rank as complementary tools probing a diverse data set of 453 human kinases, together with a physics-based interpretability layer derived from energy landscape frustration analysis. Both predictors exhibit a sharp and reproducible dichotomy on protein kinases, …

Herbularyo (Folk Healer): An Herbal Medicine Card Game, Maryjane T. Magsino, Inah Marie Q. Rivera, Armando M. Guidote, Genejane M. Adarlo

Chemistry Faculty Publications

Herbularyo, a card game teaching about herbal plants (HPs), was created and evaluated as a viable educational card game based on Tuomisto and Aksela’s criteria. A quasi-experiment was performed on 81 Grade 8 students from a private high school and 50 Grade 11 from a public high school. Independent t-test revealed that the control group (CG) and experimental group (EG) (p=0.386), and EG1 (played ≤5) and EG2 (played >5) (p=0.681) are not comparable with each other. Paired t-test showed EG performed better (p=0.001) than CG (p=0.901) whereas ANCOVA showed that playing Herbularyo improved students’ information retention (p=0.006). EG1 and EG2 …

Pest Risk Modelling For Climate-Smart Vegetable Production In East Africa, Marc Marin Agbodjan, Komi Mensah Agboka, John Odindi, Elfatih Abdel-Rahman, Onisimo Mutanga, Frank Chidawanyika, Chrysantus Tanga, Daniel Munyao Mutyambai, Sevgan Subramanian, Bonoukpoè Mawuko Sokame

All Peer-Reviewed Publications

Agricultural productivity in East Africa is increasingly threatened by climate-sensitive insect pests. This study investigates the occurrence of key vegetable pests: Brevicoryne brassicae, Plutella xylostella, Maruca vitrata, and Liriomyza mik. A comparative species distribution modelling evaluated pest risk projections under climate change. Four variable selection strategies were tested: case 1 (correlation and variance inflation factor [VIF] filtering across all predictors), case 2 (correlation and VIF filtering of bioclimatic variables merged with other predictors), case 3 (filtering based on environmental values at species occurrence point to approximate realized niches), and case 4 (dimensionality reduction using principal component analysis). These strategies were …

Fodder Maize Variety Trial: Broome 2021, Carla Milazzo, Samuel Crouch, Christopher Ham, Geoff Moore

Grain and other field crops research reports

• High yielding, highly digestible maize can be produced under irrigation on Pindan sands in northern Western Australia.
• Using high inputs, the biomass and digestibility of all trialled varieties equalled or exceeded varieties used in well-established maize growing regions of Australia.
• Eleven hybrid maize varieties were trialled near Broome. The average dry matter yield of all trialled varieties was 24t/ha at 10.5MJ/kg of dry matter.
• The impact of fall armyworm on yield was successfully reduced by using integrated pest management combining NPV virus (nucleopolyhedrovirus) with strategic insecticide applications.

Red Lines, Green Blooms: Assessing The Effects Of Historical Environmental Disparity On Algal Communities In The Twin Cities, Mn, Georgia C. Akins

Environmental Studies Honors Projects

Redlining, a discriminatory housing policy from the 1930s, shaped lastng urban inequalites that may extend to environmental conditons. This study examines links between redlining and urban water quality in the Twin Cites using algal communites as indicators. Across 28 water bodies sampled in 2022 and 2024, physical, chemical, and biological metrics were compared by redlining grade. Results show limited relatonships between redlining and most variables, with only surface water temperature differing significantly. Nutrients and algal diversity were unrelated to redlining, instead reflectng present-day conditons. These findings suggest contemporary factors play a stronger role than redlining in shaping urban freshwater ecosystems.

Tissue-Specific Heavy Metal Accumulation And Sediment–Mangrove Dynamics In Port Everglades, Florida, Dimitrios Giarikos, Amy Hirons, Jason Gershman, Sophie Welch

SECLER Data

Coastal wetlands near industrialized waterways face increasing heavy metal contamination, yet the role of mangroves as biogeochemical buffers remains poorly understood. This study quantified 16 heavy metals in sediments and red mangrove (Rhizophora mangle) tissues (roots, branches, and leaves) across four sites near Port Everglades, Florida, examining tissue-specific partitioning, contamination patterns, and sediment-to-plant transfer. The South Turning Basin (STB) was the principal contamination hotspot, with geometric mean (GM) concentrations of arsenic (As; 27.8 µg/g) and zinc (Zn; 203 µg/g) exceeding threshold effect levels, while Cu exceeded its probable effect level (PEL; 193 µg/g). Mercury (Hg) exceeded its PEL …

The Cobalt Curse: Cobalt’S Role And Risks, Marley Jackowitz

Student Theses 2015-Present

This paper examines the hidden environmental, geopolitical, economic, and social costs of the cobalt supply chain. Fueled by the demand for battery technology and electric vehicles, cobalt has become an essential element to the green energy transition. With the largest share of global cobalt deposits, the Democratic Republic of the Congo bears a disproportionate share of the industry’s harms. Cobalt mining in the DRC is marked by environmentally degrading practices and inhumane working conditions, compromising Congolese health, safety, and well-being. Chapter 1 discusses the environmental impacts of DRC cobalt mining and its adverse effects on public health. Environmentally degrading mining …

Decomposition In Urban Forest Patches Across A New York-New Jersey Urbanization Gradient, Cailee Sprouse

Theses, Dissertations and Culminating Projects

"Urbanization causes habitat fragmentation, pollution, homogenization of soil profiles, and replacement of native flora and fauna, which can alter vital ecological processes like decomposition. It is essential to investigate the impacts urbanization may have on ecosystem functioning to better inform urban land management. Studies have shown conflicting results on the impacts of urbanization on soil decomposition rates, with some showing higher, lower, or similar decomposition rates in urban soils compared to rural soils. This study aims to investigate the effects of urbanization and soil characteristics on decomposition rates in three urban forest patches in New Jersey and New York using …

Belowground Consequences Of Herbivory In Tomatoes And Cucumbers And Its Lasting Effects, Anthony Ignacio Barrera

Theses, Dissertations and Culminating Projects

Plants recruit soil microorganisms to help mediate biotic stressors such as herbivory, forming dynamic communities in the rhizosphere known as the root microbiome. This study investigated whether artificial herbivory could induce shifts in the root microbiome of tomato (Solanum lycopersicum) and cucumber (Cucumis sativus) and whether those shifts could be transferred to subsequent plants as a soil legacy effect. Plants were grown in sterilized or non-sterilized soil with or without simulated herbivory across two experimental phases, with Phase 2 plants receiving inoculum conditioned by Phase 1 plants. Bacterial community composition was assessed via 16S rRNA amplicon sequencing and analyzed using …

Ai×Life 2026: Advances In Computational Biology Across Scales For Life & Health Sciences, Suma Mohan S., Devika N. T., Pranavathiyani G.

Conference Proceedings

Book of Abstracts of the International Conference, AIxLife 2026: Advances in Computational Biology Across Scales for Life & Health Sciences, held on 17–18 April 2026, SASTRA Deemed to be University, Thanjavur, Tamil Nadu, INDIA 

About the Conference

Conventional computational biology laid the foundation for biological data analysis through statistical models, algorithms, and curated databases, enabling insights into genes, proteins, and pathways. Today, the integration of artificial intelligence, spanning machine learning, deep learning, and large language models (LLMs) is driving a transformative shift across biological scales, from atomic and molecular interactions to pathways, cellular systems, organisms, and populations.

AI-powered approaches …

Linking Urban Forest Ecosystem Services With The Sustainable Development Goals: A Bibliometric And Thematic Synthesis (2008–2022), Whisnu Febry Afrianto, Muhammad Ilham

Jurnal Penelitian Kehutanan Wallacea

Despite growing recognition of urban forests as vital providers of ecosystem services (ES) that support the Sustainable Development Goals (SDGs), existing scientific literature remains fragmented and lacks a comprehensive synthesis. This study addresses that gap through a systematic bibliometric analysis of global research on urban forestry ecosystem services published between 2008 and 2022, encompassing 229 articles. The analysis examined the three main classifications of ecosystem services and all 17 SDGs. Publications on urban forestry ecosystem services have shown a steady increase since 2008, peaking between 2018 and 2022, while citation counts reached their highest point in 2012 and gradually declined …

Species Distribution Modeling Of Parasitic Corpse Flower Rafflesia Arnoldii Var. Arnoldii R. Br Related To Host’S Fractional Photosynthetically Active Radiation In Tanggamus, Sumatra, Indonesia, Andriwibowo Andriwibowo, Suyud Utomo

Jurnal Penelitian Kehutanan Wallacea

Corpse flower, or scientifically known as Rafflesia arnoldii var. arnoldii R.Br, is one of the species that is endemic to Sumatra, Kalimantan and Java Island. As a parasitic plant, this species depends on its tree host species. While the host species depends on environmental variables include Fractional Photosynthetically Active Radiation (FAPAR), forest covers, and elevation for its growth. Then those variables were important to develop the Species Distribution Modelling (SDM) of R. arnoldii using the MaxEnt technique. One of the important regions for R. arnoldii in Sumatra is Tanggamus in Lampung, and currently, information about suitable habitats for R. arnoldii …

Cyanine Dyes As Next-Generation Fluorophores: Applications In Cell Sorting And Fingerprinting Technologies, Super-Multiplexed Spectroscopy, Biomedical Imaging, And Beyond, Lucas Allen Davis

Undergraduate Honors Thesis Collection

As biochemical, pharmaceutical, and medical sciences advance, the demand for technologies capable of probing multiple cellular targets simultaneously continues to increase. Super-multiplexed spectroscopic techniques offer a pathway toward comprehensive cellular fingerprinting by overcoming the spectral limitations of conventional fluorescence labeling. By circumventing the traditional “color barrier,” cyanine-based Raman tags enable the simultaneous discrimination of numerous cellular morphologies, allowing spectroscopy and imaging to be integrated for high-dimensional cellular analysis. Technologies developed in Goda Lab—including high-throughput flow cytometry, virtual freezing fluorescence imaging (VIFFI), Fourier-transform coherent anti-Stokes Raman spectroscopy (FT-CARS), and MERdot nanoparticles—address longstanding trade-offs between throughput, resolution, sensitivity, and multiplexing capacity. Central …

Shark Immunology And Its Biomedical Potential: Evolution, Innovation, And The Imperative Of Conservation, Reesha Bhagat

Undergraduate Honors Thesis Collection

This review aims to shed light on a significant ecological deficit and its implications for the future of science and medicine. Sharks possess a uniquely adaptive, cancer-resistant, and evolutionarily refined immune system with transformative biomedical potential, making their conservation a scientific and medical imperative. We are losing something medically irreplaceable, and we don’t even fully understand it yet. Shark conservation is a pressing scientific imperative because sharks are ecologically essential and represent an irreplaceable biomedical resource.

Assessing The Conservation Needs Of Native Texas Crayfish Species Through Distribution Analysis And Species Distribution Modeling, Elizabeth J. Croft

Biology Theses

Crayfish have essential roles in ecosystems because they are ecosystem engineers and keystone species. However, crayfish species are threatened by degradation and loss of habitats, introduction of invasive species, and high levels of endemism. Texas provides no legal protections for crayfish, despite its large number of species and endemics in the state. The overall goal of this study is to clarify the distributions of native Texas crayfish species using literature records, citizens science, and field sampling data, and highlight species in need of more conservation research. Occurrence records from all collected data were combined to visualize the distributions of species …

Transcriptomic Responses Of Teleost Fishes To Thermal And Environmental Stress: A Synthesis Of Rna-Seq Studies, Aleen Ammar

Theses, Dissertations and Culminating Projects

Climate change is driving rapid shifts in aquatic ecosystems, increasing the frequency and intensity of environmental stressors that affect survival, species distributions, and productivity. Alongside increases in temperature, stressors, such as hypoxia and acidification, are also intensifying with climate change. Teleost fishes exhibit substantial variation in tolerance to such environmental stressors. These range from specialists with narrow limits to generalists capable of persisting across fluctuating conditions, complicating predictions of vulnerability under ongoing environmental change. Transcriptomic approaches, particularly RNA sequencing (RNA-seq), provide a powerful approach for linking environmental stressors to physiological responses by quantifying genome-wide changes in gene expression. To assess …

Phenological Shifts In Reproductive Timing Of Bay Scallops (Argopecten Irradians) In New Jersey Following Subspecies Replacement, Ross John Choate Jr.

Theses, Dissertations and Culminating Projects

Bay scallops (Argopecten irradians) are commercially, ecologically, and recreationally important bivalves that have undergone major shifts in New Jersey over the past 25 years, including the extirpation of the southern subspecies from New Jersey in 2001 and its replacement by the northern subspecies from Long Island by 2004. This transition altered reproductive timing, reflected in changes to the Gonadal–Somatic Index (GSI) as well as the timing of visual gonadal conditions exhibited during specific months. Early post-reestablishment data showed peak GSI in June and July, consistent with Long Island populations, but recent observations indicate a shift toward August and September peaks, …