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Articles 6841 - 6870 of 115382
Full-Text Articles in Entire DC Network
Application Of Vermicompost Extract To Improve The Phytochemical Composition Of Berry Fruits, Jelena Tomić, Žaklina Karaklajić-Stajić, Marijana Pešaković, Svetlana M. Paunović, Boris Rilak, Maja Mikulic-Petkovsek, Metka Hudina, Robert Veberic, Nesi̇be Ebru Kafkas, Sezai̇ Erci̇şli̇, Jerneja Jakopic
Application Of Vermicompost Extract To Improve The Phytochemical Composition Of Berry Fruits, Jelena Tomić, Žaklina Karaklajić-Stajić, Marijana Pešaković, Svetlana M. Paunović, Boris Rilak, Maja Mikulic-Petkovsek, Metka Hudina, Robert Veberic, Nesi̇be Ebru Kafkas, Sezai̇ Erci̇şli̇, Jerneja Jakopic
Turkish Journal of Agriculture and Forestry
The growing market demand for environmentally friendly products for plant nutrition has led to the development of new fertilizers, particularly liquid compost-based products such as teas, extracts, and leachates. The aim of this research was to compare the effect of chemical fertilization (CF) and its combination with liquid fertilizer based on vermicompost and beneficial microorganisms (CF + VP) on the phytochemical profile of strawberry (Senga Sengana), blackberry (Čačanska Bestrna) and blueberry (Aurora). The results showed that CF + VP positively affected fruit weight (8.8 g), soluble solids (8.9°Bx), total sugars (65.5 g/kg FW), and the sum of all phenolic groups …
A Comprehensive Review Of Fermentation Technologies In Food Processing: From Traditional To Cutting Edge, Pragati Singh, Niharika Arya, Shalini Sharma, Ankita Sharma, Prasad Rasane, Supriya Singh Gaur, Sawinder Kaur, Mahendra Gunjal, Hasan Kiliçgün, Jyoti Singh
A Comprehensive Review Of Fermentation Technologies In Food Processing: From Traditional To Cutting Edge, Pragati Singh, Niharika Arya, Shalini Sharma, Ankita Sharma, Prasad Rasane, Supriya Singh Gaur, Sawinder Kaur, Mahendra Gunjal, Hasan Kiliçgün, Jyoti Singh
Turkish Journal of Agriculture and Forestry
Fermentation technologies play crucial roles in food processing, offering various advantages, including enhanced flavor profiles, extended shelf life, and improved nutritional qualities. This paper provides a comprehensive overview on the major types of fermentation as well as effects of various factors such as substrate composition, temperature, pH, oxygen availability, and microbial strain selection on the process. Despite its widespread application, traditional fermentation processes face limitations related to yield optimization, contamination risks, and process consistency. Recent advancements have significantly enhanced fermentation efficiency, product quality, and scalability, ultimately expanding the applications beyond food and beverage production into pharmaceuticals, nutraceuticals, biofuels, and waste …
Assessment Of Phenolic Composition, Sugars, And Antioxidant Capacity In Turkish Fig (Ficus Carica L.) Cultivars, Ghassan Zahid, Haşi̇m Kelebek, Ayzi̇n Küden, Flavien Shimira, Yildiz Aka Kaçar
Assessment Of Phenolic Composition, Sugars, And Antioxidant Capacity In Turkish Fig (Ficus Carica L.) Cultivars, Ghassan Zahid, Haşi̇m Kelebek, Ayzi̇n Küden, Flavien Shimira, Yildiz Aka Kaçar
Turkish Journal of Agriculture and Forestry
Fig fruits (Ficus carica L.) have significant health benefits. Türkiye is the leading fig producer in the world. Despite their diversity and rich medicinal properties, the biochemical fingerprints and nutritional quality of local figs are poorly understood. This study aimed to analyze the peels and pulps of eight Turkish figs with varying colors for their total phenolic composition, sugars, and antioxidant capacity. Thirty-one phenolic compounds (PCs) were detected using HPLC-MS/MS. The dark-purple 01-1N-58 genotype had the highest amount of colored PCs in fruit peels and pulps (151.25 and 31.57 mg/100 g dw, respectively). Likewise, the maximum quantity of colorless PCs …
A Review Of Plant–Microbe Interactions In The Rhizosphere And The Role Of Root Exudates In Microbiome Engineering, Anagha Wankhade, Emma Wilkinson, David W. Britt, Amita Kaundal
A Review Of Plant–Microbe Interactions In The Rhizosphere And The Role Of Root Exudates In Microbiome Engineering, Anagha Wankhade, Emma Wilkinson, David W. Britt, Amita Kaundal
Biological Engineering Student Research
Microbial interactions within the rhizosphere are fundamental to plant health, influencing nutrient availability, stress tolerance, and pathogen resistance. Beneficial microbes, such as plant growth-promoting microbes (PGPMs), including bacteria and mycorrhizal fungi, enhance plant resilience through mechanisms like nutrient solubilization, phytohormone production, and pathogen suppression via antimicrobial compounds and siderophores. Root exudates, composed of sugars, organic acids, and secondary metabolites, act as chemoattractants that shape the rhizosphere microbiome by recruiting beneficial microbes. Microbial metabolites can, in turn, modulate plant physiology and exudate profiles, thereby reinforcing mutualistic interactions. Stress conditions alter exudate composition, enabling plants to attract specific microbes that aid in …
A Conditional Point Cloud Diffusion Model For Deformable Liver Motion Tracking Via A Single Arbitrarily-Angled X-Ray Projection, Jiacheng Xie, Hua-Chieh Shao, Yunxiang Li, Shunyu Yan, Chenyang Shen, Jing Wang, You Zhang
A Conditional Point Cloud Diffusion Model For Deformable Liver Motion Tracking Via A Single Arbitrarily-Angled X-Ray Projection, Jiacheng Xie, Hua-Chieh Shao, Yunxiang Li, Shunyu Yan, Chenyang Shen, Jing Wang, You Zhang
Faculty, Staff and Student Publications
Objective. Deformable liver motion tracking using a single x-ray projection enables real-time motion monitoring and treatment intervention. We introduce a conditional point cloud diffusion (PCD) model-based framework for accurate and robust liver motion tracking from arbitrarily angled single x-ray projections. Approach. We propose a conditional PCD model for liver motion tracking (PCD-Liver), which estimates volumetric liver motion by solving deformable vector fields (DVFs) of a prior liver surface point cloud, based on a single x-ray image. It is a patient-specific model of two main components: a rigid alignment model to estimate the liver’s overall shifts, and a conditional PCD …
Systematic Review: Recent Developments In Magnetic-Nanoparticle-Based Dna Extraction, Stanley Evander Emeltan Tjoa, Mudasir Mudasir, Edi Suharyadi, Budi Setiadi Daryono
Systematic Review: Recent Developments In Magnetic-Nanoparticle-Based Dna Extraction, Stanley Evander Emeltan Tjoa, Mudasir Mudasir, Edi Suharyadi, Budi Setiadi Daryono
Makara Journal of Science
Deoxyribonucleic acid (DNA) is a research object for various molecular fields of study, and DNA extraction is a basic procedure in molecular biology laboratories. DNA extraction methods are evolving, from several steps using organic solvents to recent technology using magnetic nanoparticles as adsorbents for the purification step. The use of magnetic nanoparticles for DNA extraction is magnetizing because it is simple without heavy machinery, such as centrifugation and organic solvents. The application of this method is extensive and diverse. This systematic review summarizes current development trends for some aspects of this DNA extraction system from the magnetic nanoparticle synthesis method, …
Phylogenetic Analysis Of Ftsz In Wolbachia: Implications For Host Specificity, Anwar Rovik, Ayu Rahayu
Phylogenetic Analysis Of Ftsz In Wolbachia: Implications For Host Specificity, Anwar Rovik, Ayu Rahayu
Makara Journal of Science
Wolbachia are the most prevalent and successful endosymbiont in invertebrates and are categorized into 21 supergroups based on genetic phylogeny. The filamenting temperature-sensitive Z (FtsZ) protein is essential for bacterial cell division and is hypothesized to play a role in Wolbachia's control of host reproduction. However, despite FtsZ's importance, little is known about its diversity and function within Wolbachia. This study investigated the variability of the FtsZ-encoding gene among Wolbachia strains and their hosts. FtsZ gene sequences were retrieved from the National Center for Biotechnology Information database, and representative sequences were randomly selected from each host species and analyzed …
Synthesis Of Carboxymethyl Cellulose From Nypa Fruticans For Coating Metformin On Zn-Based Metal-Organic Framework Nanohybrid As A Bionanocomposite Drug Delivery System, Delviani Delviani, Viola Giary Rizkillah Maharani, Putri Nur Shadrina, Tri Warni, Regina Wan Azizah, Indra Lasmana Tarigan, Madyawati Latief
Synthesis Of Carboxymethyl Cellulose From Nypa Fruticans For Coating Metformin On Zn-Based Metal-Organic Framework Nanohybrid As A Bionanocomposite Drug Delivery System, Delviani Delviani, Viola Giary Rizkillah Maharani, Putri Nur Shadrina, Tri Warni, Regina Wan Azizah, Indra Lasmana Tarigan, Madyawati Latief
Makara Journal of Science
Diabetes is a common and rapidly spreading disease that affects 6.6% of the world’s population. Metformin hydrochloride (HCl) is an effective oral pharmacological treatment for type 2 diabetes mellitus (T2DM) patients because of its capability to reduce glucose levels and the risk of hypoglycaemia. However, gastrointestinal sensitivities to this drug can cause diarrhoea, nausea, vomiting and stomach ache. An alternative is controlled release technology by coating metformin with carboxymethyl cellulose (CMC) and zinc-metal-organic framework (Zn-MOF) through the encapsulation method. Therefore, this study aimed to coat metformin formulations using CMC in a Zn-MOF to control release into the body and minimise …
Isolation And Selection Of Bacillus Spp. As Candidate Probiotics For Use In Chickens, Adilah Adawiah, Komang Gede Wiryawan, Anja Meryandini
Isolation And Selection Of Bacillus Spp. As Candidate Probiotics For Use In Chickens, Adilah Adawiah, Komang Gede Wiryawan, Anja Meryandini
Makara Journal of Science
The growth rate of chickens can be improved by using probiotics as alternatives to antibiotics. Bacillus spp. as probiotics are particularly beneficial due to ability to form spores, which remain stable as commercial products over extended periods. This study aimed to isolate and select Bacillus spp. from Jasinga soil as probiotic candidates for chickens. A total of 15 isolates obtained of these, 12 were identified as Bacillus spp based on microscopic observations and screening test including ascertaining hemolysis, protease, amylase, and cellulase activities. Only six isolates exhibited gamma hemolysis and the ability to hydrolyze proteins, starch, and cellulose. Isolates BTJ1.1, …
Antiinflammatory Mechanisms Of Barley-Based Functional Foods Beyond Diabetes Management, Hafiz Ghulam Muhu Din Ahmed, Adnan Noor Shah, Muhammad Ahtasham Mushtaq, Xiaomeng Yang, Jiazhen Yang, Xia Li, Li’E Yang, Xiaoying Pu, Yawen Zeng
Antiinflammatory Mechanisms Of Barley-Based Functional Foods Beyond Diabetes Management, Hafiz Ghulam Muhu Din Ahmed, Adnan Noor Shah, Muhammad Ahtasham Mushtaq, Xiaomeng Yang, Jiazhen Yang, Xia Li, Li’E Yang, Xiaoying Pu, Yawen Zeng
Turkish Journal of Agriculture and Forestry
This review article investigated the antiinflammatory properties of barley, emphasizing its benefits beyond diabetes management. Barley, historically valued for its nutritional and medicinal properties, is rich in bioactive compounds such as beta-glucans, phenolic acids, and flavonoids. These compounds are known for their significant antioxidant and antiinflammatory activities. This study highlights the multifaceted mechanisms through which barley reduces systemic inflammation, including the enhancement of gut microbiota composition, the production of beneficial short-chain fatty acids, and the modulation of immune responses. Beta-glucans in barley lower cholesterol, and regulate glucose levels, while phenolic acids and flavonoids inhibit proinflammatory enzymes and cytokines, thereby reducing …
Effects Of Commiphora Myrrha Resin Extract/Nanosilver On Immune Cells, Pathogen, And Breast/Colon Cancer Cell Line Growth, Mohammad Y. Alshahrani, Essam H. Ibrahim, Abeer S. Alahmari, Mona Kilany, Ramadan Taha, Haitham I. El-Mekkawy, Amr Ahmed El-Arabey, Ahmed Ezzat Ahmed
Effects Of Commiphora Myrrha Resin Extract/Nanosilver On Immune Cells, Pathogen, And Breast/Colon Cancer Cell Line Growth, Mohammad Y. Alshahrani, Essam H. Ibrahim, Abeer S. Alahmari, Mona Kilany, Ramadan Taha, Haitham I. El-Mekkawy, Amr Ahmed El-Arabey, Ahmed Ezzat Ahmed
Turkish Journal of Agriculture and Forestry
Commiphora myrrha grows in various places of the world and is used for many purposes. The objectives of this study were to examine the biological influences of C. myrrha resin extract (MRE) alone or with its biogenic nanosilver on microbial, immune, and cancer cell growth. C. myrrha resin was boiled to prepare the MRE. Functional groups in the MRE were explored using Fourier-transform infrared spectroscopy (FTIR). MRE was used to synthesize nanosilver that was characterized using an ultraviolet-visible (UV-Vis)-spectrophotometer and X-ray diffraction. In vivo experiments included the untreated group (G1) and MRE-orally treated group (G2). Cancer cell lines, HCT-116 (colon) …
Descriptive Sensory Analysis Of Gluten-Containing And Gluten-Free Chocolate Chip Cookies Available In The Marketplace, Eniola Ola, Victoria J. Hogan, Han-Seok Seo
Descriptive Sensory Analysis Of Gluten-Containing And Gluten-Free Chocolate Chip Cookies Available In The Marketplace, Eniola Ola, Victoria J. Hogan, Han-Seok Seo
Food Science Faculty Publications and Presentations
Limited research has systematically compared the detailed sensory profiles of commercially available gluten-containing (C) and gluten-free (F) cookies using trained panelists. This study aimed to develop a comprehensive sensory lexicon for C and F chocolate chip cookies and identify key sensory attributes that differentiate them. Seven professionally trained panelists created a lexicon of 33 attributes spanning aroma, flavor, basic taste, texture, and residual property. Using this lexicon, a descriptive analysis was conducted on 12 C and 12 F cookie samples. Multivariate analysis of variance revealed significant differences between the two groups across the 33 sensory attributes (p < 0.05). A mixed model analysis showed that C cookies had higher intensities of chocolate-related and sweet aroma complex notes, while F cookies exhibited stronger nutty, artificial, and off-note flavors. In terms of texture, F cookies were higher in toothpack and powdery mouthcoat, while C cookies displayed more melt-in-mouth characteristics. Principal component analysis and agglomerative hierarchical clustering revealed three distinct clusters of test samples within both crispy and chewy cookie types, with some F cookies closely aligning with C profiles. These findings, along with the developed lexicon, provide a valuable foundation for enhancing the sensory appeal and quality of gluten-free chocolate chip cookies.
A Study On Combined Effect Of Monoterpenoid Essential Oils And Polyphenols From Grape Pomace On Selected Pathogenic And Probiotic Bacteria Strains, Haona Bao, Cosmas Mwendwa Muasya, Fur-Chi Chen, Agnes Kilonzo-Nthenge, Ying Wu
A Study On Combined Effect Of Monoterpenoid Essential Oils And Polyphenols From Grape Pomace On Selected Pathogenic And Probiotic Bacteria Strains, Haona Bao, Cosmas Mwendwa Muasya, Fur-Chi Chen, Agnes Kilonzo-Nthenge, Ying Wu
Food and Animal Sciences Faculty Research
In the current study, the combined effects of essential oils (EOs) and polyphenols (PPs) were investigated as potential antibiotic alternatives. Thymol and carvacrol at a ratio of 1:1 was used as the EO due to their well-proven synergistic antimicrobial effect. The PPs were an extracted and freeze-dried product from grape pomace. The treatment solutions were prepared at the EO to PP ratios of 0:10, 3:7, 5:5, 7:3, and 10:0, at total concentrations ranging from 0 to 1000 ppm. The minimum inhibition concentrations were examined on the pathogenic bacteria strains, namely Escherichia coli O157:H7, Salmonella typhimurium, and Enterococcus cloacae, and a …
Changes In Rfi Values Of Omomyid Mandibular Molars In Response To Climatic Shifts, Hannah Vanooteghem
Changes In Rfi Values Of Omomyid Mandibular Molars In Response To Climatic Shifts, Hannah Vanooteghem
Masters Theses
Molar anatomy reflects the functional demands of food mastication, and dental topography provides a quantitative method for evaluating how molar structure relates to dietary niche. Relief index (RFI), a dental topographic measure, has been successfully used to infer diet in extant and fossil mammals. This study tests two hypotheses regarding mandibular molars of early Eocene omomyids: (1) There is an association between changes in omomyid RFI values of first and second mandibular molars and changes in climatic variables (temperature and precipitation) from Wa0 to Wa5, and (2) The first and second mandibular molar RFI values of omomyid species are significantly …
Cholesterol Metabolism Regulated By Camkk2-Creb Signaling Promotes Castration-Resistant Prostate Cancer, Chenchu Lin, Thomas L Pulliam, Jenny J Han, Jiaqian Xu, Carlos Vera Recio, Sandi R Wilkenfeld, Yan Shi, Manoj Kushwaha, Sarah Bench, Eduardo Ruiz, Sanjanaa Senthilkumar, Jayasurya Dileep, Peter D A Shepherd, Nora M Navone, Albert R Klekers, Elizabeth M Whitley, Michael M Ittmann, Livia S Eberlin, Wenyi Wang, Daniel E Frigo
Cholesterol Metabolism Regulated By Camkk2-Creb Signaling Promotes Castration-Resistant Prostate Cancer, Chenchu Lin, Thomas L Pulliam, Jenny J Han, Jiaqian Xu, Carlos Vera Recio, Sandi R Wilkenfeld, Yan Shi, Manoj Kushwaha, Sarah Bench, Eduardo Ruiz, Sanjanaa Senthilkumar, Jayasurya Dileep, Peter D A Shepherd, Nora M Navone, Albert R Klekers, Elizabeth M Whitley, Michael M Ittmann, Livia S Eberlin, Wenyi Wang, Daniel E Frigo
Faculty, Staff and Student Publications
Castration-resistant prostate cancer (CRPC) remains an incurable disease in need of improved treatments. CAMKK2 is an emerging therapeutic target whose oncogenic effects in prostate cancer have, to date, been largely attributed to its activation of AMP-activated protein kinase (AMPK). Here, we demonstrate that CAMKK2 promotes prostate cancer growth through an alternative downstream pathway involving CAMKI and CREB. Unbiased transcriptomics identify CREB-mediated transcription as a CAMKK2-regulated process, findings that we validate using diverse molecular, genetic, and pharmacological approaches in vitro and in vivo. CAMKK2 promotes CREB phosphorylation/activation through CAMKIα independently of AMPK, CAMKIV, or other CAMKI isoforms. Functionally, the CREB family …
The Carsr Two-Component System Directly Controls Radd Expression As A Global Regulator That Senses Bacterial Coaggregation In Fusobacterium Nucleatum, Bibek G C, Chenggang Wu
The Carsr Two-Component System Directly Controls Radd Expression As A Global Regulator That Senses Bacterial Coaggregation In Fusobacterium Nucleatum, Bibek G C, Chenggang Wu
Faculty, Staff and Student Publications
Two-component systems (TCS) enable bacteria to sense and respond to environmental signals, facilitating rapid adaptation. Fusobacterium nucleatum, a key oral pathobiont, employs the CarSR TCS to modulate coaggregation with various gram-positive partners by regulating the expression of radD, encoding a surface adhesion protein, as revealed by RNA-Seq analysis. However, the direct regulation of the radD-containing operon (radABCD) by the response regulator CarR, the broader CarR regulon, and the signals sensed by this system remain unclear. In this study, chromatin immunoprecipitation followed by high-throughput DNA sequencing (ChIP-seq) identified approximately 161 CarR-enriched loci across the genome and …
Intratumoral Neutrophil-To-Lymphocyte Ratio Is Mirrored By Circulating Neutrophil-To-Lymphocyte Ratio In Non-Small Cell Lung Cancer, Kyle G Mitchell, Younghee Lee, Nathaniel Deboever, Marcelo V Negrao, Hai T Tran, Edwin Parra, Lauren Byers, Alexandre Reuben, Lorenzo Federico, Chantale Bernatchez, Jing Wang, Mara B Antonoff, Ara A Vaporciyan, Stephen G Swisher, Tina Cascone, Ignacio I Wistuba, John V Heymach, Don L Gibbons, Jianjun Zhang, Daniel J Mcgrail, Boris Sepesi, Cara L Haymaker
Intratumoral Neutrophil-To-Lymphocyte Ratio Is Mirrored By Circulating Neutrophil-To-Lymphocyte Ratio In Non-Small Cell Lung Cancer, Kyle G Mitchell, Younghee Lee, Nathaniel Deboever, Marcelo V Negrao, Hai T Tran, Edwin Parra, Lauren Byers, Alexandre Reuben, Lorenzo Federico, Chantale Bernatchez, Jing Wang, Mara B Antonoff, Ara A Vaporciyan, Stephen G Swisher, Tina Cascone, Ignacio I Wistuba, John V Heymach, Don L Gibbons, Jianjun Zhang, Daniel J Mcgrail, Boris Sepesi, Cara L Haymaker
Faculty, Staff and Student Publications
Tumor-initiated emergency granulopoiesis results in expansion of the circulating neutrophil compartment and neutrophil recruitment into the tumor microenvironment (TME), which may in turn promote tumor progression. Although an elevated circulating neutrophil-to-lymphocyte ratio (cNLR) has repeatedly been demonstrated to be an adverse prognostic factor in patients with non-small cell lung cancer (NSCLC), whether this neutrophil expansion in circulation reflects a similar relative neutrophil abundance in the TME remains unclear. We sought to characterize the relationships between cNLR and the intratumoral neutrophil-to-lymphocyte ratio (tNLR), between tNLR and proteogenomic and immune features of NSCLC tumors, and between tNLR and prognosis.We analyzed tNLR (transcriptomic …
Thermochemical Conversion Of Oily Sludge, Composition, Hazards, And Treatment Strategies: An Overview, Mahmod A. Abdulqader
Thermochemical Conversion Of Oily Sludge, Composition, Hazards, And Treatment Strategies: An Overview, Mahmod A. Abdulqader
AUIQ Complementary Biological System
Oily sludge (OS) is considered one of the most complex by-products produced in the petroleum industry as an unwanted. This work aims to provide a comprehensive review focused on the dangers of stockpiled OS, its sources and contents, as well as its complex composition. This study also analyzes the global annual generation and stockpiling quantities of OS. Therefore, the thermochemical conversion, hydrothermal carbonization (HTC) char produced via HTC called hydrochar, pyrolysis (PY) char produced via PY named pyro-char, and microwave (MW) processes, while the char produced MW labeled micro-char. In conclusion, this study will facilitate researchers and provide a clear …
Classification Of Human Trust In Ai Using Brain Activity Data, Danushka Bandara, Ruhuan Liao, Fatima Chowdhury, Leslie Abbott
Classification Of Human Trust In Ai Using Brain Activity Data, Danushka Bandara, Ruhuan Liao, Fatima Chowdhury, Leslie Abbott
Northeast Journal of Complex Systems (NEJCS)
Trust plays a crucial role in human-computer interaction, particularly in scenarios involving artificial intelligence (AI) systems. This study explores the feasibility of using functional near-infrared spectroscopy (fNIRS) data to classify trust levels in human-AI interaction scenarios. A total of 18 participants completed an image classification task with an AI team member while their hemodynamic responses were recorded using fNIRS. Preprocessing of fNIRS data involved motion artifact removal, filtering, and normalization. Exploratory analysis identified significant associations between hemodynamic responses in the prefrontal cortex and trust levels. An across-subject binary trust classification model was developed using machine learning techniques, achieving an F1 …
Effect Of Different Nutrient Media On Mycelial Growth Of Different Species Of Medicinal Mushroom, Luna Ahmad, Fahed Albiski, Ramzi Murshed, Hijazi Mando, Bssam Al Okla
Effect Of Different Nutrient Media On Mycelial Growth Of Different Species Of Medicinal Mushroom, Luna Ahmad, Fahed Albiski, Ramzi Murshed, Hijazi Mando, Bssam Al Okla
Journal of the Arab American University مجلة الجامعة العربية الامريكية للبحوث
The research was carried out in 2022 in the National Commission for Biotechnology (NCBT). The aim is studying the mycelium growth of 5 commercial strains of four medicinal mushroom: Ganoderma lucidum (G.l), Agaricus blazei (A.b), Hericium erianaceum (H.e) and Lentinus edodes (Tow strains: strain M3782 (L.e1) and strain straw (L.e2)), sourced of Aloha company of USA on four nutrient growth media: Potato Dextrose Agar (PDA), Malt extract Agar (MEA), Sabouroud Dextrose Agar (SDA) and Corn meal agar (CMA). The following mycelium growth parameters were studied: mycelium height (H), mycelium diameter (D), mycelium density (G), growth rate (GR) and growth coefficient …
Modulation Of Pulmonary Epithelial Paracellular Permeability By Pneumolysin From Streptococcus Pneumoniae, Alexandra S. Tamayo Moreira
Modulation Of Pulmonary Epithelial Paracellular Permeability By Pneumolysin From Streptococcus Pneumoniae, Alexandra S. Tamayo Moreira
Biology Theses
Pneumolysin (PLY), a key virulence factor of Streptococcus pneumoniae (S. pneumoniae), disrupts airway epithelial barriers, yet its cellular and molecular mechanisms remain poorly understood. We aim to elucidate recombinant pneumolysin (rPLY)’s effects on Calu-3 bronchial epithelial barrier integrity and underlying pathways. This study investigates the effects of non-lytic and lytic PLY concentrations (5, 15, 30 µg/mL) to test the hypothesis that PLY increases epithelial paracellular permeability by affecting the anatomy and physiology of epithelial tight junctions. To address the hypothesis that PLY increases paracellular permeability through disruption of tight junction integrity in Calu-3 cells in a time- and dose-dependent …
The Only Constant Is Change: The Role Of Genetic Diversification In Cancer And Beyond, Malgorzata Tyczynska Weh
The Only Constant Is Change: The Role Of Genetic Diversification In Cancer And Beyond, Malgorzata Tyczynska Weh
USF Tampa Graduate Theses and Dissertations
Genetic diversification, the process by which genetic variation arises in a population, is fundamental to evolution by natural selection. Mutation, a central diversification process, fuels adaptation across species, including in cancer. Yet most new mutations are neutral or deleterious on cell fitness, raising the question of how mutation-driven adaptation persists. To explore this paradox, I developed a spatial agent-based model (ABM) in which population fitness emerges from individual cells acquiring mutations at varied rates and with diverse fitness effects. I evaluated model behavior across adaptive states, mutation rates, and distributions of fitness effects. The results show that high mutation rates …
Utah Surface Irrigation Water Optimization Opportunities And Barriers, Matt Yost, Clara Anderson, Burdette Barker, Justin Wyatt Clawson, Kalen Taylor, Michael Pace
Utah Surface Irrigation Water Optimization Opportunities And Barriers, Matt Yost, Clara Anderson, Burdette Barker, Justin Wyatt Clawson, Kalen Taylor, Michael Pace
All Current Publications
Surface irrigation systems are still the predominant system used in some parts of Utah, representing nearly half of the irrigated area in the state and the region. Understanding the barriers to water optimization and opportunities for improvement in surface irrigation systems will help ensure their viability. This article presents the results of a survey of surface irrigators in Utah.
Microscopic Nucleic Acid-To-Protein Ratio: A Label-Free Approach For Pancreatic Cancer Detection, Sky Gao, Keerthi Priya Jangili, Alfred Akinlalu, Emmanuel Ogberefor, Tommy Gao, Kalpana Devaraj, Dali Sun
Microscopic Nucleic Acid-To-Protein Ratio: A Label-Free Approach For Pancreatic Cancer Detection, Sky Gao, Keerthi Priya Jangili, Alfred Akinlalu, Emmanuel Ogberefor, Tommy Gao, Kalpana Devaraj, Dali Sun
Electrical and Computer Engineering: Faculty Scholarship
Accurate and timely diagnosis remains a major clinical challenge, hindered by the limitations of conventional histopathological methods, which often rely on labor-intensive staining protocols and subjective interpretation by specialized pathologists. These methods can fail to capture the full molecular and phenotypic heterogeneity of tumors, leading to increased diagnostic time, cost, and variability. To overcome these challenges, we developed a novel label-free ultraviolet (UV) microscopic imaging technique that exploits the intrinsic optical absorption properties of cellular nucleic acids and proteins. By modifying standard brightfield microscopes, our approach quantitatively measures the nucleic acid-to-protein ratio (NPr), enabling high-resolution visualization and discrimination between malignant …
Temporal Changes In Soil Organic Carbon And Other Near-Surfacesoil Properties Under Native Tallgrass Prairie In The Arkansasriver Valley, Katie Jansson, Kristofor R. Brye, Mike Richardson, Lisa S. Wood
Temporal Changes In Soil Organic Carbon And Other Near-Surfacesoil Properties Under Native Tallgrass Prairie In The Arkansasriver Valley, Katie Jansson, Kristofor R. Brye, Mike Richardson, Lisa S. Wood
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
One climate-change mitigation pathway is soil carbon (C) sequestration. Native prairies have long been known for their soil C sequestration abilities, but the full extent of their sequestration capacity is not completely understood, particularly across diverse regions. This study evaluated the effects of soil depth and soil map unit-prairie combination on changes in various soil properties from 2018 to 2022 in the top 20 cm of two native tallgrass prairies in west-central Arkansas. Soil bulk density, pH, electrical conductivity, total nitrogen, total C (TC), soil organic matter (SOM), and Mehlich-3 extractable soil nutrients were evaluated from the 0- to 10-cm …
Detection Of Quorum-Sensing Molecules In The Mutualistic Bacteria Vibrio Fischeri Exposed To Simulated Microgravity Using Cell-Based Biosensors., Paulina Slick, Maria C. Tobarra, Alba A. Chavez, Hugo Castillo
Detection Of Quorum-Sensing Molecules In The Mutualistic Bacteria Vibrio Fischeri Exposed To Simulated Microgravity Using Cell-Based Biosensors., Paulina Slick, Maria C. Tobarra, Alba A. Chavez, Hugo Castillo
Beyond: Undergraduate Research Journal
Bacteria flourish in multiple environments when communicating with each other in a process known as Quorum Sensing. This process is accomplished by the production of small signaling molecules referred to as Autoinducers (AI). This communication allows the bacteria to alter their gene expression in an effort to regulate their cell number, behavior, community formation and virulence. The space environment provides stressful conditions for bacteria as they are exposed to radiation and Microgravity (µG or MG) altering synthesis and concentration of Autoinducers. The purpose of this research was to expose the model system Vibrio fischeri to simulated microgravity using the recently …
Establishing A Novel Neurofunctional Pre-Season Baseline For Sports-Related Concussion In Men And Women Collegiate Athletics, Jonathan C. Vincent, Jon G. Divine Md Ms, Aaron Kuehn-Himmler At Ms, Robert E. Mangine Pt Med Atc, Jim K. Ellis Od, Frederick R. Carrick Dc, Phd, Ms-Hped, Kimberly A. Hasselfeld, Blake M. Bacevich, Daniel Fosselman Do Mba, Joseph F. Clark Phd, Atc
Establishing A Novel Neurofunctional Pre-Season Baseline For Sports-Related Concussion In Men And Women Collegiate Athletics, Jonathan C. Vincent, Jon G. Divine Md Ms, Aaron Kuehn-Himmler At Ms, Robert E. Mangine Pt Med Atc, Jim K. Ellis Od, Frederick R. Carrick Dc, Phd, Ms-Hped, Kimberly A. Hasselfeld, Blake M. Bacevich, Daniel Fosselman Do Mba, Joseph F. Clark Phd, Atc
Journal for Sports Neuroscience
Objective: To develop and validate a multi-domain neurofunctional baseline incorporating ocular, vestibular, proprioceptive, and cognitive assessments for collegiate athletes, thereby providing a more comprehensive approach to detecting and managing sports-related concussions.
Design: Retrospective chart review of pre-season baseline data.
Setting: Collegiate athletic training facility.
Participants: A total of 194 Division I collegiate athletes aged 18–24 years, stratified by sport, sex, and self-reported concussion history.
Interventions: A comprehensive battery of clinical and instrument-based neurological assessments, including Dynavision D2 tests (visual-motor coordination and reaction time), stereopsis, convergence, proprioception, peripheral vision, and retinal nerve fiber layer (RNFL) thickness measurements.
Main Outcome Measures: Normative …
Evolution Of Match Technical-Tactical Performance Indicators According To Age Category In Men's National Football Teams (World Cups 2003-2019), Sergio A. Caicedo-Parada, Enrique Ortega, Jose M. Palao
Evolution Of Match Technical-Tactical Performance Indicators According To Age Category In Men's National Football Teams (World Cups 2003-2019), Sergio A. Caicedo-Parada, Enrique Ortega, Jose M. Palao
International Journal of Exercise Science
International Journal of Exercise Science 18(3): 575-590, 2025. Performance in football depends on different dynamic interactions between players that occur at technical, tactical, physical, psychological, or sociological levels. The objective of this study was to analyze the evolution of match technical-tactical performance indicators according to age category in men's national football teams (U-17, U-20 and senior). A non-experimental retrospective observational design was used. Variables studied were ball possession, goal chances, shots off target, shots on target, corner kicks, effectiveness; goals, offsides, fouls committed, yellow cards, red cards, and second yellow cards. Data were drawn from 917 matches (195 senior, 369 …
Resveratrol And Il-6 Modulation Of Cxcl1 Expression And Viability In Human Breast Cancer Cell Lines, Entkhab M. A. Alanisi, Aida H. Alobaidi, Khalid Alyodawi
Resveratrol And Il-6 Modulation Of Cxcl1 Expression And Viability In Human Breast Cancer Cell Lines, Entkhab M. A. Alanisi, Aida H. Alobaidi, Khalid Alyodawi
AUIQ Complementary Biological System
This study aims to investigate, through in vitro methods, the molecular, immunofluorescent, and immunohistochemical effects of resveratrol and IL-6 on CXCL1 gene/protein expression in human breast cancer cells (MCF-7). MCF-7 and MCF-10A cell lines were cultured and divided into four groups: control, IL-6-treated, resveratrol-treated, and a combination-treated group. CXCL1 gene expression was assessed by real-time PCR (RT-PCR), while CXCL1 protein levels were analyzed using immunofluorescence and immunohistochemistry. Cell viability was quantified by MTS assay using ELISA. CXCL1 gene/protein was overexpressed in MCF-7 cells, especially in the IL-6-treated group, but reduced in both resveratrol and combination-treated groups. MTS assay showed increased …
The Enigmatic Samuel Aughey: Nebraska’S Pastor Naturalist, Hugh H. Genoways, Margaret R. Bolick, Mary Anne Andrei
The Enigmatic Samuel Aughey: Nebraska’S Pastor Naturalist, Hugh H. Genoways, Margaret R. Bolick, Mary Anne Andrei
Zea E-Books Collection
Samuel Aughey at age 39 became the first Professor of Natural Science at the new University of Nebraska in Lincoln, serving from 1871 to 1883. He was an ordained pastor of the Evangelical Lutheran Church, with an addendum degree from Pennsylvania College (now Gettysburg College) in 1856 and an A.M. degree two years later. His early pastoral work was in Pennsylvania, but in 1864 he became a home missionary to a church in Dakota City, Nebraska. Aughey’s career at the university was marked with successes and honors, but also criticism and questions about his basic knowledge of the sciences. While …