Digital Commons Network^™

Height Does Not Impair The Hydraulic System Of The Tallest Tropical Dipterocarp Trees, Paulo Bittencourt, Arne Scheire, Palasiah Jotan, Jehova Lourenço-Junior, Lindsay F. Banin, Mohd. Aminur Faiz Bin Suis, David Frp Burslem, Bradley O. Christoffersen, David Coomes, Peter Groenendijk

School of Integrative Biological & Chemical Sciences Faculty Publications

Half of the aboveground biomass in forests is stored in a disproportionately small number of very tall trees. These giants are predicted to be more vulnerable to drought-induced damage because height impairs their hydraulic system. We evaluated whether the hydraulic system of world’s tallest tropical tree species—Southeast Asian dipterocarps—are negatively affected by their height. The more negative xylem pressures caused by tree height were fully compensated for through adjustment of vessel anatomy and leaf hydraulic traits, and the trees suffered no height-related loss in growth during a severe drought. Therefore, height does not make the hydraulic systems of the world’s …

Defining Contractile And Age-Specific Remodeling In Atrial Fibrillation, Hannah Cizauskas

Dissertations

Atrial fibrillation (AFib) is the most common cardiac arrythmia worldwide and is characterized by hallmarks including electrical, fibrotic, and hemodynamic remodeling, each of which can cause or be caused by alterations in the contractile apparatus. However, there is little known about contractile remodeling in AFib. While our current understanding of AFib lacks contractile remodeling, it also largely ignores the contribution of aging-induced remodeling. Aging is the strongest risk factor for AFib development, with most patients diagnosed with AFib over the age of 70, and aging also involves the three molecular hallmarks of AFib, which could explain increased susceptibility of AFib …

Soil And Crop Productivity Under On-Farm Vermiculture-Based Farming System At Smallholder Rates In The Sub-Humid Tropics, Felix Matheri, Edward Karanja, David Bautze, Milka Kiboi

All Peer-Reviewed Publications

Introduction – Vermiculture-based manures such as vermicompost and its byproducts like vermiculture are gaining importance as viable alternative soil amendments. This is practically feasible, especially in subsistence farming, by replacing common organic and synthetic inputs that are often costly and inaccessible to farmers. However, the effectiveness of vermiculture tea as a sole amendment or in combination with other inputs has not been tested under field conditions. Moreover, its longterm impact on soil and crop productivity has not been established. Methods – We conducted an on-farm field study in farmers' fields to evaluate the effects of sole vermiculture tea (Vermi), in …

First Photographic Record Of A Pale-Colored Wild Boar (Sus Scrofa) Consistent With Leucism In The Zagros Mountains, Iraqi Kurdistan, Bahez F. Ali, Hana A. Raza, Nabaz Horeni

AUIQ Complementary Biological System

Pigmentation anomalies in wild mammals are rare and poorly documented in wild boar (Sus scrofa) populations. Leucism, characterized by partial loss of melanin while retaining normal eye pigmentation, represents one of the least frequently reported coloration anomalies in the species. During a camera-trap survey in Bamo Mountain, Zagros Mountains of Iraqi Kurdistan, an unusually pale-colored wild boar consistent with leucism was recorded. The individual exhibited cream to light-blond pelage with retained darker pigmentation on the snout and distal limbs, while the eyes remained normally pigmented. Its morphology and behavior were otherwise consistent with those of a typical wild …

Cultivating Narratives: A Critical Discourse Analysis Of Higher Education Student-Led Farms And Gardens, Maximilan Sherard, Marc T. Sager

Publications

Despite extensive research on community agriculture, little attention has been paid to student-led farms or gardens (SFGs) in higher education contexts. SFGs represent a unique site for community agriculture due to their diverse stakeholders, academic affiliations, and the institutional policies they navigate. This study examines online promotional materials from 42 SFGs located on land-grant higher education campuses across the United States. Using critical discourse analysis, we (1) map these organizations’ practices and (2) identify competing discourses about community and agriculture within their promotional narratives. We identify and explain four core practices (membership, growing, distribution, and purpose) and connect these practices …

A Comparative Study Of Aging And Cortical Folding In Chimpanzees And Olive Baboons, William D. Hopkins, Angela M. Achorn, Michele M. Mulholland, Elizabeth R. Magden, Steven J. Schapiro, Courtney L, Fults, Jean‐Francois Mangin, Adrien Meguerditchian

Anthropology Faculty Publications

In light of the evidence that nonhuman primates naturally develop Alzheimer's disease neuropathologies, there is a renewed interest in research on the comparative biology of aging, including neurological changes across the age groups in species with diverse lifespans. In this paper, we examined age‐related differences in two measures of cortical folding, mean depth and fold opening, in a sample of chimpanzees (Pan troglodytes) and olive baboons (Papio anubis). We found significant species differences in the slope and pattern of age‐related changes in cortical folding. As predicted, chimpanzees showed negative linear associations between age and mean depth and …

The Regulatory Corner: Light Brown Apple Moth Not To Be Taken Lightly, Harry Fulton

Midsouth Entomologist

No abstract provided.

Cryptic Habits: The Hidden Lives Of Midsouth Entomologists. Interview With Dr. Jerome Goddard, Mississippi Public Health Entomologist And Fiction Novelist, C. J. Peterson, Jerome Goddard

Midsouth Entomologist

No abstract provided.

Rethinking Preoperative Mrsa/Mssa Screening Through Molecular Triage, Rob E. Carpenter, Greg Whitlock

Human Resource Development Faculty Publications and Presentations

Background: Preoperative screening for methicillin-resistant Staphylococcus aureus (MRSA) and methicillin-susceptible S. aureus (MSSA) is intended to identify patients at increased risk of surgical site infection and guide decolonization and perioperative antimicrobial prophylaxis. However, many molecular assays reduce this decision to a binary positive/ negative result, potentially obscuring clinically important distinctions in organism identity, methicillin resistance attribution, and mupirocin resistance risk. Methods: This structured narrative review organized direct perioperative evidence and indirect mechanistic, implementation, and economic evidence around one question: how MRSA/MSSA screening can move from organism detection to actionable molecular triage. Results: Useful preoperative reporting depends on assigning resistance markers …

Uti, Delirium, And Dementia: A Conceptual Bioinformatics Framework For Clinical Attribution, Rob E. Carpenter, Andrew Krouse

Human Resource Development Faculty Publications and Presentations

Urinary tract infection (UTI) is frequently invoked to explain delirium, confusion, and functional decline in persons with dementia. Yet urine positivity in this population often reflects asymptomatic bacteriuria, colonization, chronic pyuria, contamination, or sampling noise rather than clinically attributable infection. For biomedical informatics and computational diagnostics readers, this narrative review contributes an integrative conceptual bioinformatics framework for probabilistic clinical attribution of suspected UTI in dementia under uncertainty. We formalizes the attribution problem by distinguishing organism detection from a clinically plausible infection-related contribution to neurocognitive decline. The framework integrates clinical, laboratory, biological, and longitudinal data to clarify whether urinary findings are …

Purdue University Extension Program Evaluation Professional Development Pilot Study To Assess Evaluation Competencies Among Educators, Mariah K. Awan, Rama Radhakrishna, Hui-Hui Wang

Journal of Human Sciences and Extension

For the first part of this study, we conducted a descriptive research study with Purdue Extension educators to determine their evaluation competencies and their perceived level of importance for evaluation activities. We also asked about their competence in evaluation methods. For part two, we interviewed Purdue Extension administrators about their perceptions of Program Evaluation as a whole within Indiana Extension. The interview protocol questions were related to perceived roles of administrators, perceived strengths and opportunities for Purdue Extension Program Evaluation efforts, evaluation knowledge needed by educators, and possible future evaluation directions for Purdue Extension. We found that educators indicated mid-level …

Working Out Loud Resilience In Cooperative Extension: Results From An Internal Pilot Program, Lyndi M. Buckingham-Schutt, Debra Sellers, Barbara Dunn Swanson, Jody Catherine Gatewood

Journal of Human Sciences and Extension

This study evaluates Working Out Loud (WOL) Resilience, a program designed to enhance resilience through peer-to-peer learning, targeting social isolation and self-determination. The WOL Resilience pilot program, delivered by Iowa State University Extension and Outreach facilitators, included 29 participants and 5 facilitators over 8 weeks. Participants engaged in weekly sessions focusing on 8 resilience attributes. Evaluation included baseline, midpoint, and post surveys; facilitator feedback forms; and interviews. Results showed improvements in resilience attributes from baseline to post-program and indicated high program acceptability and positive behavioral changes. The peer-to-peer learning model proved beneficial for participants and feasible for delivery through Extension …

Needs Assessment For Evaluation Competencies Among Extension And Outreach Professionals, Mariah K. Awan, Hui-Hui Wang, Rama Radhakrishna

Journal of Human Sciences and Extension

We conducted an extensive literature review to develop an assessment tool with both quantitative and qualitative items that can be used to conduct a statewide needs assessment of professional development needs in program evaluation for Extension educators and similar non-profit organizations. This tool can be used to identify priority topics for evaluating professional development trainings and materials. It can be easily distributed via Qualtrics. The results of the literature review and the needs assessment survey instrument are shared.

Geomapping With Python: An Innovative Data Visualization Technique, Tirna Purkait, Dipti Dev

Journal of Human Sciences and Extension

No abstract provided.

Making Digital Connections: Extension Educators’ Perceptions And Use Of Qr Codes, Kobina D. Fanyinkah, Jefferson D. Miller, Casandra Cox, Will Doss

Journal of Human Sciences and Extension

While Extension educators recognize the potential of digital tools for outreach, there are still barriers to adoption, effective implementation, and acceptance. The goal of this study was to evaluate Extension educators’ perceptions concerning quick-reponse (QR) codes in outreach activities, including their effectiveness, integration, and barriers faced when using them. The study used a qualitative approach in the form of semi-structured interviews of twelve Extension professionals purposely sampled from the Ozark region of the Arkansas Cooperative Extension Service. Participants perceived the effective use of the technology to be related to their target clients’ age and technological proficiency. Additionally, Extension professionals reported …

Perspectives Of Scholars, Families, And Advisors On 360-Degree Video Technology In Graduate Education, Oluwatobi A. Mogbojuri, Bridget A. Walsh, Matthew Aguirre

Journal of Human Sciences and Extension

This study explored the experiences of scholars in creating and sharing 360-degree videos, as well as the perspectives of families and advisors who viewed the videos. Focus groups and individual interviews were conducted online using a videoconferencing platform. Perspectives from 20 participants (15 scholars, three advisors, and two family members) were analyzed using thematic analysis. Three primary themes were identified: (1) barriers to 360-degree video use, (2) perspective shifts and limited change, and (3) storytelling and scholar visibility. Findings suggest that 360-degree video technology may be an innovative tool for enhancing recruitment and retention, especially for historically marginalized groups, through …

Exploring Immune Priming In The Species Exaiptasia Diaphana, Torrence Campos

Biology Theses

Vibrio coralliilyticus is a pathogen that infects various coral species across several reef ecosystems and causes mortality within a span of a few days. With increasing temperatures, the pathogen becomes more virulent towards coral. Probiotics such as MCH1-7 have previously been used to treat infected corals before and after exposure to V. coralliilyticus. In this study, we will be using a species of sea anemone Exaiptasia diaphana in place of coral to evaluate the effects of two V. coralliilyticus strains ATCC BAA-450 and OFT6-21. It was determined that BAA-450 was more virulent. It led to immediate stress and higher mortality. …

The Hope College Department Of Biology: The First 50+ Years, Christopher C. Barney

Faculty Publications

The Hope College Department of Biology was founded in 1899 with the appointment of the first Professor of Biology at Hope, Samuel Mast. During the first 50+ years of the Biology Department, there were eight total faculty members in the department, including Frances Koeman, the first female faculty member in the natural sciences. Four faculty members, Mast, Frank Patterson, Oscar Thompson, and Teunis Vergeer were primarily responsible for developing the department’s curriculum and programs, with Mast and Vergeer also carrying out published research. The department was housed primarily in Van Raalte Hall and the Science Building (now Lubbers Hall) for …

Pearson Syndrome: Expanding The Clinical Spectrum Of A Mitochondrial Cytopathy-A Case Report, Alizah Faisal, Hooria Waqas, Hania Masood, Armeen Butt, Saad Rahman, Muhammad Sheraz Hameed, Syed Rafay Hussain Zaidi, Ali Iqbal, Muhammad Usama Naveed

Department of Medicine Faculty Papers

BACKGROUND: Pearson syndrome (PS) is a rare multisystem mitochondrial disorder characterized by single large-scale mitochondrial DNA deletions (SLSMDs). It typically presents in infancy with refractory sideroblastic anemia, exocrine pancreatic insufficiency, and failure to thrive. Due to its heterogeneous manifestations and resemblance to other hematological conditions, early diagnosis remains a clinical challenge.

CASE PRESENTATION: A south asian male infant presented with persistent pancytopenia, severe anemia unresponsive to intravenous and oral iron and multivitamin supplements, exocrine pancreatic insufficiency, failure to thrive, and metabolic acidosis. Born to consanguineous parents, the child had a significant family history of early infant deaths and hematological abnormalities. …

Nebraska And The Midwest Agtech Ecosystem: Benchmarking Innovation Investment And Translation Gaps, Ankit Chandra, Ishani Lal, Brennan Costello

Department of Agricultural and Biological Systems Engineering: Presentations and White Papers

Agricultural innovation is central to the sustainable transformation of food systems, yet the capital that finances it is unevenly distributed relative to where food is produced. This paper develops a diagnostic framework for measuring this mismatch and applies it across the U.S. Midwest from 2021 to 2025, with particular emphasis on Nebraska's structural position within this landscape. Drawing on venture capital deal-flow data, 17 stakeholder interviews, and a novel strength-weakness-opportunity-gap (SWOG) ecosystem mapping methodology, we document $736 million in tracked Midwest AgTech funding across eight states (Nebraska, Iowa, Missouri, Illinois, Indiana, Kansas, North Dakota, and South Dakota). We introduce three …

The Roles Of Shame In Ex-Christians' Personal Experiences And Deconversion Journeys, Anaya Bruno

Florida Atlantic Undergraduate Research Journal

Although the benefits of religion on individuals’ mental wellbeing have been well-studied, research exploring aspects of religion that may prove harmful to mental wellbeing is limited. This study explores the roles of shame in the experiences of ex-Christians that led to their deconversion. The study’s results have implications for understanding the experiences of religious trauma, considering that chronic shame has been linked to the development of trauma. Respondents, recruited via Reddit, answered survey questions about the ways in which they perceived shame to influence their religious experiences, personal experiences, and religious deconversion. Inductive thematic analysis was utilized to derive themes …

Man, Cut The Crop: Effects Of Cropectomies On Survival And Behavior In Drosophila Melanogaster, Emily Peraza

Florida Atlantic Undergraduate Research Journal

The gut-brain axis mediates communication between the digestive and nervous systems to regulate physiology and behavior. Its dysfunction profoundly impacts human health and causes disease. Region-specific hormones and neurotransmitters in the digestive system respond to several processes to signal the brain, but the mechanisms of gut-brain signaling are not fully defined. Drosophila melanogaster is a powerful model for studying gut biology by showing remarkable similarity to mammalian digestive systems, as both regulate energy by distributing nutrients. We refined a minimally invasive surgical protocol to remove the crop from adult flies. We then utilized the Activity Recording CAFE (ARC) and Drosophila …

Exploring Gender Differences In Perceptions Of Ai's Impact On Social Media, Samkit Bothra

Florida Atlantic Undergraduate Research Journal

Artificial Intelligence (AI) is increasingly shaping social media through content personalization and moderation, raising questions about its influence on public opinion and trust in digital news. Gender plays a key role in shaping perceptions of AI’s impact, with men and women potentially viewing its applications differently. This study explored gender-based perspectives on AI’s role in social media, focusing on its effects on information credibility and privacy. Data from 155 participants, collected via Amazon Mechanical Turk, were analyzed using IBM’s SPSS. The first hypothesis proposed that women would be more skeptical than men about AI's use in news, citing greater concerns …

Evaluating Fungicide Programs For Grapevine Disease Management And Fungicide Sensitivity Monitoring, Abraham Ahumada

Master's Theses

Grapevine diseases, such as powdery mildew and Botrytis bunch rot, require repeated fungicide applications to maintain fruit quality and reduce yield losses. However, fungicide performance can vary among products, application programs, disease pressure, and pathogen sensitivity. This thesis evaluated fungicide programs for control of powdery mildew in ‘Chardonnay’ grapes and assessed fungicide sensitivity of Botrytis cinerea isolates collected from California vineyards.

Powdery mildew, caused by the fungal pathogen Erysiphe necator, is a major threat to the production of Vitis vinifera grapes worldwide. Because powdery mildew management relies heavily on fungicide applications, field evaluations are needed to compare the efficacy …

Birds Of A Tether Flock Together: Examining Centromere Tethering And Chromosome Segregation In Caulobacter Crescentus, Jake Dwyer, Simon Kruczak, Rodrigo Arana-Garrido, Paola Mera

MICRO-CCS student projects

Introduction:

Chromosome segregation is essential for all domains of life. Caulobacter crescentus is a key model for studying this process. It divides asymmetrically into two morphologically distinct cells. Proteins can be seen directly with fluorescent tags.

Research done on Caulobacter can apply to many different bacteria. The ParABS system is integral to chromosome segregation in Caulobacter.

ParS – DNA sequence on the chromosome

ParB – CTP-binding protein that specifically recognizes parS

ParA – ATP-binding protein that non-specifically binds DNA and provides the force for segregation.

PopZ – Polar tethering protein via interactions with ParB.

TipN - Polar protein that …

How Does High-Oil Sorghum Change Potential Extracellular Enzyme Activity Across Soil Depth Profiles Under Drought Conditions?, Krystal Monique Role, Rounak Patra, Wendy Yang

MICRO-CCS student projects

Transgenic oil sorghum reallocates photosynthate-carbon (C) into vegetative lipids, accumulating nonstructural lipids in both shoot and root tissues. Altered plant C allocation and root lipid accumulation may shift root exudate chemistry, belowground C inputs, and microbial nutrient demand throughout the soil profile. While aboveground productivity in high-oil sorghum is well-characterized, its belowground impacts on soil microbial enzyme activity and exchangeable cation dynamics, especially across soil horizons under drought stress remain unknown.

Project objective was to find out how transgenic high oil sorghum (Tx-HO1) influences CNP acquiring extracellular enzyme activities and soil exchangeable cation dynamics across soil horizons under drought and …

Association Of Ultra-Processed Food Intake With Insulin Secretion And Sensitivity In Mexican American Children: Results From The Safari Study, Hemant Kulkarni, Rector Arya, Srinivas Mummidi, Sharon P. Fowler, Roy G. Resendez, Juan C. Lopez-Alvarenga, Vidya Farook, John Blangero

Human Genetics Publications

Background/Objectives: There is increasing interest in and evidence for the role of ultra-processed foods (UPFs) in cardiometabolic risk. We tested the hypothesis that UPF intake score derived from dietary history is associated with measures of insulin secretion and sensitivity in a family setting even when the process of type 2 diabetes is still to ensue. Methods: We used data from our well-characterized San Antonio Family Assessment of Metabolic Risk Indicators in Youth (SAFARI) study cohort of nondiabetic children (aged 6–17 years). Dietary history was assessed using the Block Food Frequency Questionnaire. Outcomes of interest were 19 clinically useful indexes of …

Mosaic Loss Of Y Chromosome Associates With Lung Function, Emphysema, And Epigenetic Aging, Woei Yuh Saw, Kangjin Kim, Yichen Huang, Jeong H. Yun, Xiaolong Ma, Jason Bacon, Yash Pershad, Daniel Levy, George T. O’Connor, John Blangero

Human Genetics Publications

Rationale: As the global population ages, identifying risk factors for age-related diseases, such as COPD, is crucial for public health. Mosaic loss of Y chromosome (mLOY) in blood cells is an age-related somatic mosaicism event, but its relationship with pulmonary health remains undercharacterized. Objectives: To examine the association between mLOY and pulmonary outcomes in men. Methods: Leveraging mLOY assessment (cell fraction ≥ 5%) in over 12 000 men, including 5097 from the COPDGene Study and 7235 from six additional cohorts in the Trans-Omics for Precision Medicine program, we investigated mLOY associations with respiratory outcomes and epigenetic aging using multivariable cross-sectional, …

Alternative Methods To Improve Livestock Performance While Grazing Low-Quality Forages., Ivan Raynard Thomas Jr

Graduate Theses and Dissertations

Stocker cattle producers in the southeastern part of the U.S. heavily depend on traditional forages such as bermudagrass [Cynodon dactylon] pastures during the warm season for grazing. Summer annual forages offer stocker cattle operations a valuable alternative source of forage. These forages have high yield potential and can help extend the grazing season. This is particularly beneficial during the summer months when traditional forage sources may be limited. Warm-season annual grasses may experience a decrease in crude protein concentrations during late summer and early fall. As a result, it may be necessary to find alternative sources of crude protein or …

Evaluation Of A High Protein Low Oligosaccharide Soybean Meal In Poultry Production, Kasey Matusik

Graduate Theses and Dissertations

The purpose of this study was to evaluate the influence of feeding a high protein, low oligosaccharide soybean meal to optimize poultry nutrition by the effects of feeding the soybean meal to roosters, broiler chickens, and turkeys. Two research objectives were evaluated to determine whether high protein, low oligosaccharide soybean meal would have increased nutritional value. The first objective assessed the metabolizable energy (ME) content of a high protein, low oligosaccharide soybean meal compared to a conventional soybean meal. Using roosters, broiler chickens, and turkey poults, three bioassays were conducted to evaluate the ME of the soybean meal. Results demonstrated …