Digital Commons Network^™

Tumor-Specific Cytotoxicity Of Pyrazole-Based Chalcone Derivatives In Human Oral Squamous Cell Carcinoma Cell Lines, Mehtap Tuğrak Sakarya, Hali̇se İnci̇ Gül, Hiroshi Sakagami, Junko Nagai, Yoshihiro Uesawa, Kenjiro Bandow

Turkish Journal of Biology

Background/aim: Pyrazole-based chalcone hybrids are notable in medicinal chemistry for their potential biological activity, although their tumor-specific cytotoxicity and mechanisms remain unknown in OSCC cells. This first study of pyrazole-chalcone hybrids in OSCC cells explores the tumor-selective cytotoxic effects and underlying cell death mechanisms triggered by a series of 10 newly synthesized pyrazole-based compounds (MS1MS10) in OSCC cell lines. Material and methods: The cytotoxic effects of the compounds were assessed using the MTT assay on four human OSCC cell lines and three types of normal human oral cells. The tumor-selectivity index (TS) and potency-selectivity expression (PSE) were calculated, and active …

Microplastic Pollution In Marine Ecosystems: Sources, Impacts, Andstakeholder-Based Solutions, Seren Acarer Arat

Turkish Journal of Biology

Microplastics (MPs) are plastic particles of anthropogenic origin with a size range of 1–5000 μm. Marine MP pollution is increasingly recognized as a significant global environmental challenge. MPs, which enter marine ecosystems from land- and marine-based sources, pose physical, chemical, and biological risks due to the adsorption of various pollutants and the formation of biofilm layers. MPs are found in various organisms from lower to higher trophic levels of the marine food web. The negative effects of MPs on marine organisms depend on their abundance, their characteristics, and the exposure time of organisms to MPs. MPs can adversely affect various …

Application Of Biological And Green Nanomaterials In Wastewater Treatment: Techniques For The Effective Removal Of Dyes, Heavy Metals, And Organic Pollutants, Emi̇ne Sena Kazan Kaya, Zeynep Ci̇ğeroğlu, Tansel Kemerli̇ Kalbaran, Başak Temur Ergan, Zeynep Mi̇ne Şenol, Meral Yildirim Yalçin

Turkish Journal of Biology

Background/aim: Wastewater from industrial, agricultural, and residential sources poses significant environmental and public health risks due to the presence of dyes, heavy metals, and organic pollutants. Conventional treatment methods are often inadequate for the complete removal of these pollutants. Therefore, the development of sustainable, environmentally friendly, and highly efficient treatment techniques has become increasingly important. The aim of this review is to evaluate the application of biological and green nanomaterials in wastewater treatment and to compare their effectiveness against different types of pollutants (dyes, heavy metals, and organics).

Materials and methods: This review provides detailed information on the removal of …

A Review Of Deep Learning Architectures For Plant Disease Detection​, Yasi̇n Kaya, Ercan Gürsoy

Turkish Journal of Biology

Background/aim: The rapid advancement of deep learning (DL) has revolutionized plant disease detection by enabling highly accurate, image-based diagnostic solutions. This review provides a comprehensive synthesis of DL-based methodologies for plant disease detection, systematically structured around the key stages of the modeling pipeline, encompassing data acquisition, preprocessing, augmentation, classification, detection, segmentation, and deployment.

Materials and methods: The review focuses on evaluating convolutional neural network (CNN) architectures such as VGG, ResNet, EfficientNet, and DenseNet across diverse experimental contexts. Classification strategies are categorized according to their integration of visualization techniques (e.g., saliency maps, Grad-CAM) to enhance model interpretability, emphasizing the pivotal role …

Green Carbon Dots In The Era Of Ai: Sustainable Synthesis, Intelligent Drug Delivery, Advanced Diagnostics, And Bioimaging, Emi̇ne Sezer, Fulden Ulucan Karnak, Si̇nan Akgöl

Turkish Journal of Biology

Background/aim: Green carbon dots (GCDs) are a rapidly developing class of nanomaterials that are revolutionizing various scientific disciplines due to their unique optical properties, low toxicity, and sustainable synthesis. This review offers a comprehensive roadmap for the field, emphasizing the synergy between GCDs and artificial intelligence (AI).

Materials and methods: We begin by detailing the sustainable synthesis of GCDs, highlighting green chemistry principles and the transformative role of AI in optimizing their production. Subsequently, we explore the critical characterization of GCDs, including their structural, optical, and biocompatibility assessment. The core of this study explores the diverse biomedical applications of GCDs, …

Applications Of Transfer Learning In Sunflower Disease Detection: Advances, Challenges, And Future Directions, Yonis Gulzar

Turkish Journal of Biology

Background/aim: Sunflower (Helianthus annuus) is a crop of high economic and nutritional importance that continues to suffer significant yield losses due to foliar diseases. Traditional image-based and laboratory detection techniques remain limited by subjectivity, cost, and scalability. Transfer learning (TL) has recently emerged as an effective approach to overcoming these challenges involving the reuse of pretrained deep models for plant pathology tasks. Presented here is a systematic examination of recent TL-based studies on sunflower disease classification to identify prevailing trends, research gaps, and future opportunities.

Materials and methods: A structured Scopus query was employed to retrieve peer-reviewed articles published between …

Flavonoids And Phenolic Compounds: A Promising Avenue For Neurodegenerative Disease Therapy, Tesli̇me Özge Şahi̇n, Özge Cemali̇, Merve Özdemi̇r, Şeri̇fe Ayten, Duygu Ağagündüz

Turkish Journal of Biology

Background/aim: Neurodegenerative diseases such as Alzheimer’s, Parkinson’s, Huntington’s, and ALS are characterized by a progressive loss of nerve cells, for which no definitive cure currently exists. These conditions share common pathological mechanisms, including chronic neuroinflammation, oxidative stress, protein aggregation, and mitochondrial dysfunction. Flavonoids and other plant-derived phenolic compounds have recently attracted attention for the treatment of such conditions due to their antiinflammatory and antioxidant properties. This review explores the neuroprotective mechanisms of flavonoids and evaluates their potential for the prevention and treatment of neurodegenerative diseases.

Materials and methods: A literature search of the Web of Science, PubMed, and ScienceDirect databases …

The Effects Of The Combined Use Of Carbon Quantum Dots And Antibacterial Agents On Pathogenic Bacteria, Derya Doğanay, İbrahi̇m Serkan Avşar, Şevval Maral Özcan Aykol, Gamze Çamlik, Besa Bi̇lakaya, İsmai̇l Tuncer Deği̇m

Turkish Journal of Biology

Background/aim: This study evaluates the challenges associated with overcoming antimicrobial resistance and innovative approaches to combat multidrug-resistant (MDR) bacterial infections.

Materials and methods: Novel codoped carbon quantum dots (CCQDs) were synthesized using citric acid as the carbon source and L-cysteine as the nitrogen codoping atom. The formulation in which citric acid was retained was designated as CCQDs-1, whereas the purified version, from which citric acid was removed, was termed CCQDs-2. The antibacterial properties of CCQDs-1 and CCQDs-2 were compared using the agar well diffusion method. This study comprehensively characterizes these nanomaterials and evaluates their antibacterial potential, both alone and in …

Dramatic Biases In Terrestrial Nitrogen Fixation In Earth System Models Revealed By Natural Isotope Signatures, Maoyuan Fang, Shushi Peng, Philippe Ciais, Daniel S. Goll, Benjamin Z. Houlton, Ying-Ping Wang, Yilong Wang, Pan Liu, Joshua B. Fisher, Pierre Regnier

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Biological nitrogen fixation (BNF) is the primary input of new reactive nitrogen to natural terrestrial ecosystems. However, this flux is poorly constrained due to its unclear drivers and associated control mechanisms. Here, we extend the existing theory of nitrogen (N) isotope mass balance to estimate BNF rates and then use a Bayesian approach to constrain the BNF rates in natural terrestrial ecosystems by using measurements of natural N-isotope ratios (δ¹⁵N) in plants (δ_P) and soil (δ_S). Together with pairwise δ_P and δ_S measurements from 18 forest sites covering diverse climates and thousands …

Nuclear Poly(A)-Binding Protein And Nucleolin Utilize Their Rna Recognition Motifs To Read Par Chains, Leilei Shi, Morgan Dasovich, John R Horton, Hongrui Liu, Qiansheng Zhan, Swarnalatha Manickavinayaham, Collene R Jeter, Isaiah J Mixon, Nicholas M Zehrbach, Charles A Ishak, Je-Hyun Yoon, Xiaodong Cheng, Anthony K L Leung, Mark T Bedford

Faculty, Staff and Student Publications

Poly(ADP-ribosyl)ation (PARylation) is a post-translational modification mediated by ADP-ribosyltransferases, known as PARPs, which attach ADP-ribose units onto proteins, forming negatively charged multimeric chains. This modification relaxes chromatin at DNA damage sites, facilitating repair machinery access. Additionally, PAR polymers serve as docking platforms for effector proteins, termed PAR "readers", commonly involved in DNA repair. The recruitment of these proteins is mediated through conserved protein domains, including RNA recognition motifs (RRMs). Using an array of hundreds of recombinant RNA-binding domains, we systematically examined RRM interactions with PAR chains of varying lengths. Despite their chemical similarity to RNA, only a small subset of …

Epac2 Deficiency Compromises Adaptation To Dietary Acidification By Decreasing H+ Transport In The Renal Nephron, Kyrylo Pyrshev, Anna Atamanchuk, Wenli Yang, Mariya Kordysh, Fang Mei, Oleg Zaika, Xiaodong Cheng, Oleh Pochynyuk

Faculty, Staff and Student Publications

Kidneys are central in maintaining acid-base homeostasis by recovering filtered bicarbonate (HCO3-) in the proximal tubule and by secreting H+ in the collecting duct. Here, we demonstrate a critical role of the exchange protein directly activated by cAMP (Epac) signaling, and particularly the Epac2, in governing renal adaptation to dietary acid load. RNAseq analysis of the renal cortical area revealed that Epac1&2 deficiency was associated with changes in gene profile seen in acidosis. Renal expression of Epac2 but not Epac1 was enhanced by acid load. Epac2-/- mice developed a pronounced metabolic acidosis due to the inability to acidify urine in …

Long-Term Results From The Agile Study Of Azacitidine Plus Ivosidenib Vs Placebo In Newly Diagnosed Idh1-Mutated Aml, Pau Montesinos, Dylan M Marchione, Christian Recher, Michael Heuser, Susana Vives, Ewa Zarzycka, Jianxiang Wang, Marta Riva, Rodrigo T Calado, Andre C Schuh, Su-Peng Yeh, Adriana E Tron, Jianan Hui, Diego A Gianolio, Sung Choe, Prapti Patel, Stéphane De Botton, Courtney D Dinardo, Hartmut Döhner

Faculty, Staff and Student Publications

In the phase 3 AGILE study, after a 12.4-month median follow-up, ivosidenib, a mutant isocitrate dehydrogenase 1 (IDH1) inhibitor, combined with azacitidine significantly improved event-free survival, overall survival (OS), and complete remission rates compared with placebo-azacitidine in patients with newly diagnosed IDH1-mutated acute myeloid leukemia (AML), who were unfit for intensive chemotherapy. This post hoc analysis reports long-term follow-up results from AGILE after a median follow-up of 28.6 months. Overall, 148 patients were randomized to receive ivosidenib-azacitidine (n = 73) or placebo-azacitidine (n = 75). Median OS was significantly longer with ivosidenib (29.3 months; 95% confidence interval …

Comparative Analysis Of Targeted Rna-Seq And Optical Genome Mapping For Detecting Gene Rearrangements In Acute Leukemia, Chi Young Ok, Guilin Tang, Sanam Loghavi, Shimin Hu, Qing Wei, Andres E Quesada, Mark J Routbort, Rashmi Kanagal-Shamanna, C Cameron Yin, Iman Sarami, Sofia Garces, Nitin K Agarwal, Raja Luthra, Hong Fang, Fatima Zahra Jelloul, Julian Bryan, L Jeffrey Medeiros, Keyur P Patel, Gokce A Toruner

Faculty, Staff and Student Publications

Background/Objectives: Gene rearrangements involving oncogenes are major drivers in acute leukemia, influencing disease classification, prognosis, and therapeutic decision-making. Targeted RNA sequencing (RNA-Seq) panels capable of detecting intergenic and intragenic fusions across multiple genes are increasingly used in diagnostic settings. However, comparative evaluation with orthogonal technologies remains limited.

Material and Methods: We compared the performance of a 108-gene anchored multiplex PCR (AMP)-based RNA-Seq panel with that of Optical Genome Mapping (OGM) in 467 acute leukemia cases. The cohort included 360 cases of acute myeloid leukemia (AML), 89 B-lymphoblastic leukemia (B-ALL), 12 T-lymphoblastic leukemia (T-ALL), and 6 cases of mixed phenotype …

Dissecting The Intrinsic And Extrinsic Regulators Of Prostate Cancer Dormancy In The Bone Microenvironment, Mostafa M. Nasr

USF Tampa Graduate Theses and Dissertations

Metastatic disease is the primary driver of cancer-related mortality. In prostate cancer (PCa), patient survival decreases dramatically once the disease spreads to distant organs, with over 80% of metastases occurring in the bone. This dissemination is often followed by a clinically silent period of tumor dormancy that can last for years, creating a critical reservoir of cells poised for lethal relapse. A significant barrier to understanding and targeting this dormant phase has been the lack of robust experimental models. This thesis first addresses this challenge by establishing a novel stress-induced model of PCa dormancy, validated across multiple murine and human …

Prevalence And Molecular Characterization Of Non-Typhoidal Salmonella In Poultry Of Dar Es Salaam, Tanzania, Tumwi T. Salah, Paulo S. Joseph, Bishop I. Magidanga, Richard S. Mwakapuja, Victor A. Makene

Tanzania Journal of Science

Poultry is one of the common source of non-typhoidal Salmonella and poultry products are the major sources of human and animal infections with the Salmonella. A cross-sectional study was conducted to determine the prevalence of non-typhoidal Salmonella in live commercial and backyard chickens from retail markets and farms in Dar es Salaam city, Tanzania. The study was conducted in four districts; Ubungo, Kinondoni, Temeke and Ilala. A total of 400 chickens (120 broilers, 120 layers and 160 backyard chickens) were tested for Salmonella. Salmonella isolation and identification was carried out using bacteriological standard methods and polymerase chain reaction (PCR) …

Morphological And Biochemical Characterization Of Endophytic Bacteria From Selected Medicinal Plants Found At The University Of Dar Es Salaam, Tanzania, Ibrahim Juma

Tanzania Journal of Science

Endophytic bacteria are capable of colonising internal tissues of medicinal plants, and producing secondary metabolites (biochemical compounds) of beneficial importance like the ones produced by their host plants. Though Tanzania harbours a wide species of medicinal plants with endophytic bacteria capable of producing such important bioactive substances, research on these bacteria remains scant, which limit their biotechnological applications. This work was undertaken to isolate and document endophytic bacteria from tropical almond, local avocado, banana and blue snake weed plants found at the University of Dar es Salaam, main campus. The study characterised the isolated endophytes based on morphological descriptors and …

Crude Extracts Of Seaweeds (Ulva Lactuca And Eucheuma Spinosum) As Biostimulants For Enhancing Sweet Pepper Production, Charles Olambo Joseph, Seif Amour M

Tanzania Journal of Science

Sweet pepper is the world’s second most important vegetable after tomato, making its production vital for economic growth and supporting livelihoods. However, growing concerns about environmental protection and sustainability make the search for eco‑friendly alternatives to synthetic fertilizers inevitable. Seaweed extracts are rich in bioactive compounds that can stimulate key plant growth and defense pathways making them effective biofertilizer. A Randomized Complete Block Design was laid out to evaluate the potential of seaweed extract (U. lactuca and E. spinosum) in promoting the growth and productivity of sweet pepper(Capsicum annuum L.). Seaweed was applied in both liquid and …

Molecular And Cellular Characterization Of Planarian Stem Cell Microenvironments, Frederick G Mann, Carolyn E Brewster, Dung M Vuu, Mol Mir, Riley Galton, Shao-Fu Nien, Enya R Dewars, Carlos Guerrero-Hernández, Jason A Morrison, Mary C Mckinney, Lucinda E Maddera, Melainia L Mcclain, Kate E Hall, Seth Malloy, Shiyuan Chen, Brian D Slaughter, Sean A Mckinney, Stephanie H Nowotarski, Anoja Perera, Blair W Benham-Pyle, Alejandro Sánchez Alvarado

Faculty, Staff and Students Publications

Stem cell niches are essential for regulating stem cell self-renewal and differentiation during tissue repair and regeneration. However, the mechanisms supporting stem cell function in highly regenerative organisms, such as the freshwater planarian Schmidtea mediterranea, remain unclear. Using spatial transcriptomics, we identified two cell types associated with planarian stem cells: secretory cells we term "hecatonoblasts" and intestinal cells. Surprisingly, while hecatonoblasts were in close physical proximity to stem cells in the mesenchyme, they were dispensable for regeneration. In contrast, intestinal cells, despite lacking direct contact with stem cells, regulated both their position and function during regeneration. Electron microscopy revealed diverse …

Factor Structure Of Food And Physical Activity Parenting Practices Among Us Fathers By Ethnicity And Survey Language: A Cross Sectional Study, Salma M A Musaad, Louise C Mâsse, Alicia Beltran, Oriana Perez, Teresia M O'Connor

Children’s Nutrition Research Center Staff Publications

Background: Parenting practices contribute to children’s eating and physical activity behaviors, and thereby their risk of obesity and associated medical conditions. Fathers may engage in different parenting practices than mothers. The objective of this study was therefore to establish psychometrically sound tools in English and Spanish for measuring Physical Activity Parenting Practices (PAPP) and Food Parenting Practices (FPP) for Hispanic and non-Hispanic fathers of diverse races for use in future studies, such as evaluations of family-based obesity interventions targeted at fathers.

Methods: We conducted a preliminary assessment of the psychometric properties of a reduced version of the PAPP and FPP …

Unraveling The Morphophysiological, Biochemical, And Yield Responses Of Maize Genotypes To Contrasting Nitrogen Conditions Using Multivariate Approaches, Muhammad Faheem Jan, Yu Lin, Waqas Liaqat, Muhammad Tanveer Altaf, Changzhuang Liu, Wang Shuai, Gönül Cömertpay, Israr Aziz, Önder Albayrak, Ming Li

Turkish Journal of Agriculture and Forestry

Genotypic variation plays a pivotal role in modulating the activity of nitrogen (N) assimilating enzymes, photosynthetic rate, N accumulation, plant growth, and yield. Despite this, the extent to which growth and N-assimilating enzymes exhibit differential responses across genotypes and their influence on yield and nitrogen use efficiency (NUE) remains inadequately explored. This study aimed to elucidate genetic variations among two inbred maize lines (Huang C and 178) and their hybrid (Huang C × 178) for key morphophysiological and biochemical traits under contrasting N conditions. Multivariate statistical methods, including principal component analysis (PCA) and structural equation modeling (SEM), were used to …

Adapting Northern Herbs For Desertification Control Around Poyang Lake, China​, Haijing Xiao, Zhenwu Bian, Junyu Xu, Shimeng Li, Mengting Xiao, Min Guo, Xianglong Bu, Muhammad Rafiq, Chunsong Cheng

Turkish Journal of Agriculture and Forestry

Desertification poses a pressing global challenge, threatening both environmental stability and socioeconomic well-being, and it requires detailed monitoring of its dynamics and drivers to inform land restoration and sustainable development strategies. Around Poyang Lake, China’s largest freshwater lake, desertification has triggered profound ecological degradation and economic losses, intensified by human activities and climate change. This study investigates these challenges by evaluating an integrated revegetation approach that combines Beach vitex (V. rotundifolia) with nitrogen-fixing licorice (Glycyrrhiza spp.) to improve soil quality, stabilize environmental conditions, and foster sustainable land management. Field experiments examined the drought tolerance and soil enhancement capabilities of five …

Effect Of Three Different Crop Rotations On Seed Productivity And Soil Properties In Organic Tomato Seed Production: A Comprehensive 13-Year Field Study With Three Cycles, Gülay Beşi̇rli̇, İbrahi̇m Sönmez, Bariş Albayrak, Mehmet Şi̇mşek, Zühtü Polat, Nesri̇n Uzunoğullari, Nesri̇n Tunali̇, Gürsel Çeti̇n, Razi̇ye Kul

Turkish Journal of Agriculture and Forestry

This study was carried out to investigate the effects of three different crop rotation practices and three cycle periods on tomato seed yield and quality and some soil characteristics in organic farming conditions. The crop rotations included tomato as the primary crop along two intercrops (CR-1: tomato-leek-okra crop rotation, CR-2: tomato-head cabbage-lettuce crop rotation, CR-3: tomato-watermelon-onion crop rotation). At the end of the study, seed yield and quality of other vegetable species (leek, okra, head cabbage, lettuce, watermelon, and onion) included in the trial along with tomato, seed-borne pathogens, and some soil properties of the trial area were determined. The …

Determinants Of Job Performance In Forestry Organizations: A Structural Equation Modeling Approach On Technical Staff In The Mediterranean Region, Mehmet Pak, Ari̇f Okumuş

Turkish Journal of Agriculture and Forestry

This study aimed to explore the individual, institutional, and job-related factors influencing the job performance of technical staff in the Regional Forestry Directorates located in the Mediterranean Region of Türkiye. Data were collected through a mixed-method approach, including mostly face-to-face interviews, complemented by partially online questionnaires. Data were obtained from 650 technical staff, including regional directors, enterprise managers, section chiefs, and forest engineers. Structural equation modeling was applied, and variables were validated using confirmatory factor analysis. Model fit indices were within acceptable limits (e.g., RMSEA = 0.069, CFI = 0.838, GFI = 0.809). The results indicate that institutional factors had …

Nitrogen Management In Enhancing Raspberry (Rubus Idaeus L.) Productivity And Sustainable Development In Fruit Cultivation, Aleksandar Leposavić, Žaklina Karaklajić-Stajić, Sezai̇ Erci̇şli̇, Darko Jevremović, Ivana S. Glišić, Branko Popović, Olga Mitrović

Turkish Journal of Agriculture and Forestry

This study investigated the effect of reduced nitrogen (N) fertilizer dosage on the vegetative and generative potential, physical and chemical characteristics, and fruit yield of raspberry (Rubus idaeus L.). Two raspberry cultivars (Willamette and Meeker) were treated with low and high doses of calcium ammonium nitrate and urea over 3 consecutive years (2021–2023) in Western Serbia. Basic floricane traits and fruit quality parameters were analyzed using widely accepted methodologies. The results showed significant variations in primocane growth, floricane traits, and berry quality in response to different N fertilizer doses, whereas soluble solid content (SSC) was more stable. Lower N fertilizer …

The Impact Of Endogenous And Exogenous Fungi In Saline-Alkali Soil On The Growth And Root System Of Pine Trees, Chunfeng Shi, Zhixin Ju, Kan Gao, Wenzhong Fan, Bo Yang

Turkish Journal of Agriculture and Forestry

The objective is to explore planting methods that enhance the ability of black pine to cope with salt stress environments, improve its growth under such conditions, and observe its growth and physiological characteristics under various experimental conditions. For this purpose, endophytic mycorrhizal Indian pear-shaped fungus and ectomycorrhizal two-colored wax mushrooms were selected and inoculated onto potted black pine seedlings, and a control group was set up. After inoculation, the mycorrhizal infection rate, salt damage symptoms, growth rate, root parameters, and various physiological indicators under different salt stress durations were evaluated. Results showed that as the salt concentration was raised to …

Changes In Phenolics And Organic Acid Contents Of Postharvest Eggplants In Response To Preharvest Fertilizer Applications And Postharvest Edible Coatings, Nuretti̇n Yilmaz, Şeyda Çavuşoğlu

Turkish Journal of Agriculture and Forestry

Pre- and postharvest techniques play a key role in improving the quality and shelf life of fresh horticultural products. The aim of this 2-year study was to evaluate the postharvest phenolic and organic acid content in eggplants under different fertilizers and postharvest treatments. Before planting, all plots were treated with 2000 cc da−1 of humic acid through a drip irrigation system. Plots treated only with humic acid were considered the control group. Fifteen days after planting, the other plots were treated with 2000 cc da−1 of liquid vermicompost fertilizer or 2000 cc da−1 of organomineral fertilizer via drip irrigation. Postharvest, …

Development Of Functional Cottage Cheese Enriched With Elderberry Pomace Powder: Nutritional And Antioxidant Enhancement, Roxana Nicoleta Ratu, Florina Stoica, Ioana Cristina Crivei, Ionut Dumitru Velescu, Florin Daniel Lipsa, Andreea Bianca Balint, Romina Alina Marc, Petru Marian Cârlescu, Marius Giorgi Usturoi, Emi̇ne Maci̇t

Turkish Journal of Agriculture and Forestry

The increasing demand for sustainable and functional foods has driven interest in utilising agro-industrial by-products, such as elderberry pomace, to enhance the nutritional and antioxidant properties of food products. This study aimed to develop a functional cottage cheese enriched with elderberry pomace powder (EPP) and evaluate its nutritional composition, antioxidant potential, sensory acceptability, and textural properties. Cottage cheese samples were formulated with EPP at concentrations of 3% and 5%, alongside a control sample devoid of EPP. The results showed that the inclusion of EPP significantly increased the levels of anthocyanins, flavonoids, and polyphenols, along with enhanced antioxidant activity, compared to …

10.27.2025 Ored Connect, Liz Williamson

ORED Newsletter

ORED Field Fest

OTC Director Candidates

Genetic Characterization And High-Resolution Total Mrna Sequencing Of The Millipede Cherokia Georgiana Bollman, 1889, Elena Cruz

Biology Theses

There are approximately 12,000 described species within the class Diplopoda. Only six species, falling within four of sixteen orders, have fully sequenced genomes. No whole genomes are available for incredibly diverse families like Xystodesmidae. Many interesting characteristics in this group are poorly defined at the genetic level, such as the production of a defensive hydrogen cyanide secretion and UV fluorescence in the order Polydesmida. Here, we present a genetic characterization of the polydesmid millipede Cherokia georgiana Bollman, 1889. We include tissue-specific sequencing metrics, alignment and assembly of mitochondrial DNA consensus sequence according to tissue type, and phylogenetic tree construction using …

Pharmacological Profiling In Cll Patients During Pirtobrutinib Therapy And Disease Progression, Shady I Tantawy, Burcu Aslan, Ganiraju Manyam, Lakesla R Iles, Natalia Timofeeva, Neetu Singh, Nitin Jain, Alessandra Ferrajoli, Philip A Thompson, Keyur P Patel, Sai Prasad Desikan, William G Wierda, Varsha Gandhi

Faculty, Staff and Student Publications

No abstract provided.