Digital Commons Network^™

Michigan's Upper Peninsula Is The Cradle Of Paul Bunyan's Beehives, Thomas J. Straka

Upper Country: A Journal of the Lake Superior Region

One of the Michigan Upper Peninsula’s earliest industries was iron production. Iron furnaces (smelters) were part of that industry; these were primarily fueled by charcoal, produced in hundreds of charcoal kilns scattered across the Upper Peninsula. The four basic kiln designs (rectangular, round, conical, and beehive) were all used in the region, with the beehive design becoming the predominant form. James C. Cameron, Jr. is credited with developing the beehive charcoal kiln design while employed by Upper Peninsula iron furnaces. This design was first introduced to the Upper Peninsula, and then to Northeastern Wisconsin, Northern New York, and the Far …

Exploring Racial And Ethnic Disparities In Alzheimer's Disease And Related Dementias: Prevalence, Healthcare Utilization, And Costs, Michael E. Myers Ii

Doctoral Dissertations and Projects

Objective: This study aims to investigate the disparities in prevalence rates, healthcare utilization patterns, and healthcare costs associated with Alzheimer’s Disease and Related Dementias (ADRD) among various racial and ethnic groups over time. Methods: Utilizing data from the medical expenditure panel survey over a five-year period, this study employs factorial logistic regression to analyze ADRD prevalence rates and multivariate analysis of variance to examine healthcare utilization and costs. The analysis focuses on weighted populations to account for the representation of racial and ethnic groups, ensuring the generalizability of the findings. Results: The study identifies statistically significant disparities in ADRD prevalence, …

The Descent Of Anolis: Assemblages, Convergence, And Ecomorphological Evolution, Christopher G. Anderson

Biology ETDs

The evolutionary outcomes we observe in modern organisms, particularly associations between phenotypes and environments, have been and remain an invaluable tool in interpreting the biological phenomena that shape our world. In the following chapters, I leverage a comprehensive phylogenetic and morphological dataset for 351 species comprising a diverse group of arboreal lizards, the Anolis clade, to explore how communities and morphologies evolve. First, I characterized patterns among coexisting lineages of Anolis to reveal a general pattern of phylogenetic relatedness among lineages comprising assemblages and identify differences attributable to a biogeographic variable. Then I examined the morphological consequences associated with the …

Seasonal And Species-Level Water-Use Strategies And Groundwater Dependence In Dryland Riparian Woodlands During Extreme Drought, Jared Williams, John C. Stella, Michael Bliss Singer, Adam M. Lambert, Steve L. Voelker, John E. Drake, Jonathan M. Friedman, Lissa Pelletier, Li Kui, Dar A. Roberts

Michigan Tech Publications

Drought-induced groundwater decline and warming associated with climate change are primary threats to dryland riparian woodlands. We used the extreme 2012–2019 drought in southern California as a natural experiment to assess how differences in water-use strategies and groundwater dependence may influence the drought susceptibility of dryland riparian tree species with overlapping distributions. We analyzed tree-ring stable carbon and oxygen isotopes collected from two cottonwood species (Populus trichocarpa and P. fremontii) along the semi-arid Santa Clara River. We also modeled tree source water δ18O composition to compare with observed source water δ18O within the floodplain to infer patterns of groundwater reliance. …

Examining Confidence In Scientific Literacy Amongst General Biology And General Chemistry Students, Amy Sullivan

Honors Theses

Scientific literacy is a term used to describe a person’s ability to understand scientific concepts, read and write those concepts, and link those concepts to situations outside of the classroom in order to make informed decisions in their daily lives. This research paper details a study observing how scientific literacy confidence varies among general biology and chemistry students at the University of Mississippi. The goal of this research is to determine if students in general biology and chemistry classes will have similar self-reported confidence in their science literacy. This research took place at the University of Mississippi amongst Biology 160/161 …

Addition And Subtraction: Coral Reproduction And Disease In A Changing Ocean, Ashley Rossin

LSU Doctoral Dissertations

Marine diseases are changing the landscapes of coral reefs particularly throughout the Western Atlantic. Stony coral tissue loss disease (SCTLD) swept through this region impacting at least 22 stony coral species. White plague (WP) is a more ephemeral disease, but still has a significant impact on coral reef health and perseverance, especially under a changing ocean. While these impacts are seen on the reef-scale, we can zoom into the tissue-level to identify disease markers for both diseases and identify their differences. This has ramifications for disease intervention, as well as mitigation strategies. Despite continuous disease outbreaks, healthy corals persist and …

Artificial Intelligence Predictive Analytics In Heart Failure: Results Of The Pilot Phase Of A Pragmatic Randomized Clinical Trial, Konstantinos Sideris, Charlene R Weir, Carsten Schmalfuss, Heather Hanson, Matt Pipke, Po-He Tseng, Neil Lewis, Karim Sallam, Biykem Bozkurt, Thomas Hanff, Richard Schofield, Karen Larimer, Christos P Kyriakopoulos, Iosif Taleb, Lina Brinker, Tempa Curry, Cheri Knecht, Jorie M Butler, Josef Stehlik

Faculty, Staff and Students Publications

OBJECTIVES: We conducted an implementation planning process during the pilot phase of a pragmatic trial, which tests an intervention guided by artificial intelligence (AI) analytics sourced from noninvasive monitoring data in heart failure patients (LINK-HF2).

MATERIALS AND METHODS: A mixed-method analysis was conducted at 2 pilot sites. Interviews were conducted with 12 of 27 enrolled patients and with 13 participating clinicians. iPARIHS constructs were used for interview construction to identify workflow, communication patterns, and clinician's beliefs. Interviews were transcribed and analyzed using inductive coding protocols to identify key themes. Behavioral response data from the AI-generated notifications were collected.

RESULTS: Clinicians …

Classification Of Lakebed Geologic Substrate In Autonomously Collected Benthic Imagery Using Machine Learning, Joseph K. Geisz, Phillipe A. Wernette, Peter C. Esselman

Michigan Tech Publications

Mapping benthic habitats with bathymetric, acoustic, and spectral data requires georeferenced ground-truth information about habitat types and characteristics. New technologies like autonomous underwater vehicles (AUVs) collect tens of thousands of images per mission making image-based ground truthing particularly attractive. Two types of machine learning (ML) models, random forest (RF) and deep neural network (DNN), were tested to determine whether ML models could serve as an accurate substitute for manual classification of AUV images for substrate type interpretation. RF models were trained to predict substrate class as a function of texture, edge, and intensity metrics (i.e., features) calculated for each image. …

Joint Environmental And Social Benefits From Diversified Agriculture, Laura Vang Rasmussen, Ingo Grass

Earth and Environmental Sciences Faculty Publications

Agricultural simplification continues to expand at the expense of more diverse forms of agriculture. This simplification, for example, in the form of intensively managed monocultures, poses a risk to keeping the world within safe and just Earth system boundaries. Here, we estimated how agricultural diversification simultaneously affects social and environmental outcomes. Drawing from 24 studies in 11 countries across 2655 farms, we show how five diversification strategies focusing on livestock, crops, soils, noncrop plantings, and water conservation benefit social (e.g., human well-being, yields, and food security) and environmental (e.g., biodiversity, ecosystem services, and reduced environmental externalities) outcomes. We found that …

Agricultural Groundcover Update February 2024, Justin Laycock

Natural resources published reports

• About 92% of the grainbelt had adequate (more than 50%) vegetative groundcover to prevent wind erosion in February 2024.

• Nearly 8% of the grainbelt (1,193,400 ha) had less than 50% groundcover, which is inadequate to prevent wind erosion.

• The northern grainbelt had the highest risk of wind erosion and 16.5% of this farmland had inadequate groundcover.

• Less than 0.7% of the grainbelt had a high to very high risk of wind erosion because groundcover was less than 30%.

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Sovereign Seeds: Analyzing The Sustainability Of Peasant Seeds In The Context Of Climate Change And Rural Exodus In Tunisia, Alice Carlson

Independent Study Project (ISP) Collection

How sustainable are peasant seeds? I answer this question on the basis of three elements: environment, economy, and social justice. Using interviews with farmers from various regions of Tunisia, an interview with an expert on climate change and migration, and an interview with a civil society organization working to promote sustainable agriculture, I found that peasant seeds are a sustainable solution for a suffering agricultural sector. Depleted water sources and drought are bringing to light the problems with water-intensive hybrid seeds, and farmers are losing money. As young men increasingly leave the agricultural sector, women are left behind, finding themselves …

Life Line Spring 2024, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

In this Issue:

The Department Welcomes Dr. Grooms; Otterbein's New Pollinator/Rain Garden; Alumni Return to Share Research; Svitana Serves on Ohio EPA VAP Rules Review Advisory Committee; Field Geology Students Explore Death Valley and the Grand Canyon; Students Volunteer at Remote Area Medical Clinic; The Mussels of the Stillwater River and Greenville Creek; More Than "Just" a Chickadee; An Enriching Time at the Zoo; Human Reaction Times; Using Computer Models to Inform Real World Control Methods in Street Dogs; Svitana Continues Work with NGWA; DIY Microbial Fuel Cell Challenge; Birds of a Feather...; Students Research Impact of Sunscreens on Corals; …

Multi-Node Temperature Monitoring Method For Digital Agricultural Planting Based On Wireless Sensor Network, Pei Wang

Turkish Journal of Agriculture and Forestry

Abstract: In order to monitor the temperature of agricultural planting in time and avoid reducing the yield and quality of crops due to excessive temperature fluctuation, a multi-node temperature monitoring method of digital agricultural planting based on wireless sensor network is proposed. Firstly, the wireless sensor network structure in agricultural digital temperature monitoring is designed, and the overall structure of digital agricultural planting multi-node temperature monitoring is designed by combining it with the upper computer to collect agricultural planting temperature data. Secondly, the characteristics of agricultural planting temperature data are extracted, and the data are transmitted to the upper computer …

Maize Production In Ghana: A Case Study Of Asante Akim North Municipality, Vincent Osei

Masters Theses

In spite of the numerous benefits of maize production in Ghana, its production is faced with a lot of challenges leading to production losses. Asante Akim North Municipality is one of the largest maize-producing areas in Ghana. However, studies on maize and its production in this municipality are under-researched, hence the need for this study. The main objective of the study is to analyze a 10-year (2013-2022) production trend of maize in Asante Akim North Municipality to identify factors affecting maize production in the municipality, so as to seek pragmatic measures to help improve maize yields in the municipality and …

Mushroom Composition Across An Elevational Gradient During The 2024 Wet Season In Mazumbai Forest Reserve, Tanzania, Christopher Brady

Independent Study Project (ISP) Collection

Mushrooms are key bioindicators that contribute greatly to ecological health, and their diversity is indicative of a healthy ecosystem. However, even with the vital role they play in ecological health, there are few studies which measure the diversity of mushrooms in Mazumbai Forest Reserve (MFR), Tanzania, Africa, and none which focus on diversity along the elevational gradient within the reserve (1300-1900m). This study measures the diversity and equitability of mushrooms growing in six elevational zones within MFR during the rainy season of 2024. A species checklist of mushrooms growing in MFR during the 2024 rainy season was created, tracking the …

The Role Of Geomorphological Context In Vegetative Succession Within The Breiðamerkurjökull Glacial Foreland, Lucas Nerbonne

Independent Study Project (ISP) Collection

As glaciers retreat worldwide at an accelerating pace, understanding primary succession in these newly exposed landscapes becomes increasingly critical. This study examines the initial vegetative colonization patterns in glacial forelands, focusing on the influence of geomorphological formations of resulting plant communities. By analyzing vegetative communities in glaciofluvial and push moraine deposits, this study highlights how the more varied, channelized morphologies of fluvial deposits create potential microclimates better conducive to heterogenous plant colonization than the homogenous terrain of the nearby push moraine. Vegetative coverage, sediment size, and species abundance was collected at 480 sites across 6 different historical glacial extents across …

Preliminary Assessment Of Boat-Generated Wake Influence On The Ecological Structure Of A Seagrass Meadow, Noah Alexander Gorman

Harriet L Wilkes Honors College Theses 2020 - Present

Seagrass meadows are crucial ecosystems for countless marine fauna and flora. With the decline of these ecosystems globally, understanding the threats they face represents the first step in mitigating further destruction and establishing effective restoration efforts. The purpose of this thesis was to provide a preliminary assessment of the scale and intensity of boat-generated wakes on a severely reduced shallow-water seagrass meadow located in the southernmost portion of the Indian River Lagoon along a high-traffic recreational boating area. Wake intensity and seagrass structure (species composition, distribution, and abundance) was measured within Coral Cove Park, Jupiter, Florida. Results showed that the …

Flora Of The Dreat Mountains (Center Of Algeria) - Inventory, Taxonomy And Biogeography, Nabila Ouadeh, Khellaf Rebbas

Journal of Bioresource Management

Following the publication of the article on the synthaxonomic study of the Dreat forest, the aim of this inventory of the Dreat forest’s flora (semi-arid zone in central Algeria) to allow us a quantitative analysis on the basis of biogeographic parameters such as specific richness, geography of distribution, endemism and rarity. A subjective sampling was carried out between 2018 and 2021 at the level of the various formations (forest, matorral, altitude grasslands, and steppe). This analysis showed considerable species richness, estimated at around 468 taxa belonging to 278 genera and 66 families. Therophytes dominate the other living forms, according to …

Eurasian Aspen (Populus Tremula L.): Central Europe's Keystone Species 'Hiding In Plain Sight', Antonín Kusbach, Jan Šebesta, Robert Hruban, Pavel Peška, Paul C. Rogers

Aspen Bibliography

Knowledge of Eurasian aspen’s (Populus tremula L.) ecological and growth characteristics is of high importance to plant and wildlife community ecology, and noncommercial forest ecosystem services. This research assessed these characteristics, identified aspen’s habitat optimum, and examined causality of its current scarce distribution in central Europe. We analyzed a robust database of field measurements (4,656,130 stands) for forest management planning over 78,000 km² of the Czech territory. Our analysis we used GIS techniques, with basic and multivariate statistics such as general linear models, ordination, and classification. Results describe a species of broad ecological amplitude that has heretofore attracted …

Chasing The Rainbow: Systematics Of New Guinean Rainbow Skinks, Taylor Probst, Alison Whiting

Library/Life Sciences Undergraduate Poster Competition 2024

Oral Presentation Honorable Mention

• Carlia are known as the “Rainbow skinks” due to their iridescent scales (see Figure 1).

• Carlia are found across Oceania (see figure 2), however only relationships among the Australian species are known.

• New Guinean Carlia are divided into three species groups based on size, distribution, and morphology.

• Species within the Carlia fusca complex have primarily been delineated based on regional color patterns (see Figure 4).

• New Guinea is known for extreme lizard diversity, specifically within skinks.

• Research has shown that many lizard groups underwent a rapid diversification within New Guinea, …

Floodplain Restoration And Its Effects On Summer Water Temperature And Macroinvertebrates In Whychus Creek, Oregon (Usa), Wesley N. Noone, Patrick M. Edwards, Yangdong Pan, Colin R. Thorne

Environmental Science and Management Faculty Publications and Presentations

Stream restoration is a proposed climate adaptation tool; however, outcomes of floodplain restoration on stream temperature have been debated. Despite a growing number of studies that investigated water temperature in restored streams, few have quantified temperature variations in new habitat types created by restored hydrogeomorphic processes to explore the effects on aquatic macroinvertebrates. We evaluated the hypotheses: (1) restoration increases habitat diversity, (2) habitat diversity increases water temperature variability, and (3) restoration increases the diversity of macroinvertebrate assemblage and temperature associations. In August 2021, we collected environmental data to describe the aquatic habitats, water temperature and quality (continuous and discrete), …

A Biogeographical Appraisal Of The Threatened South East Africa Montane Archipelago Ecoregion, Julian Bayliss, Gabriela B Bittencourt-Silva, William R Branch, Carl Bruessow, Steve Collins, T Colin E Congdon, Werner Conradie, Michael Curran, Savel R Daniels, Iain Darbyshire, Harith Farooq, Lincoln Fishpool, Geoffrey Grantham, Zacharia Magombo, Hermenegildo Matimele, Ara Monadjem, Jose Monteiro, Jo Osborne, Justin Saunders, Paul Smith, Claire N Spottiswoode, Peter J Taylor, Jonathan Timberlake, Krystal A Tolley, Érica Tovela, Philip J Platts

Faculty, Staff and Student Publications

Recent biological surveys of ancient inselbergs in southern Malawi and northern Mozambique have led to the discovery and description of many species new to science, and overlapping centres of endemism across multiple taxa. Combining these endemic taxa with data on geology and climate, we propose the 'South East Africa Montane Archipelago' (SEAMA) as a distinct ecoregion of global biological importance. The ecoregion encompasses 30 granitic inselbergs reaching > 1000 m above sea level, hosting the largest (Mt Mabu) and smallest (Mt Lico) mid-elevation rainforests in southern Africa, as well as biologically unique montane grasslands. Endemic taxa include 127 plants, 45 vertebrates …

Evaluating The Environmental Impacts Of U.S. Historical Oil Spill Incidents, Yiming Liu, Hua Cai

Graduate Industrial Research Symposium

Exposure to risks associated with the production and usage of products, particularly oil, poses significant threats to both ecological systems and human health. Notable examples include the Gulf War Oil Spill (1991) and the Deepwater Horizon Oil Spill (2010). However, numerous smaller-scale oil spills, which collectively contribute to substantial oil releases, often remain overlooked. To fill this gap, our study first developed a detailed oil spill incidents database, covering 1967 to 2023. We quantified the released amount (RA) of oil spills recorded by the National Oceanic and Atmospheric Administration (NOAA). Subsequently, we utilized life cycle impact indicators in ReCiPe to …

Microclimate, An Important Part Of Ecology And Biogeography, Julia Kemppinen, Jonas J. Lembrechts

School of Biological Sciences: Faculty Publications

Brief introduction: What are microclimates and why are they important? Microclimate science has developed into a global discipline. Microclimate science is increasingly used to understand and mitigate climate and biodiversity shifts. Here, we provide an overview of the current status of microclimate ecology and biogeography in terrestrial ecosystems, and where this field is heading next.

Microclimate investigations in ecology and biogeography: We highlight the latest research on interactions between microclimates and organisms, including how microclimates influence individuals, and through them populations, communities and entire ecosystems and their processes. We also briefly discuss recent research on how organisms shape microclimates from …

New Record Of The Pavement Ant, Tetramorium Immigrans (Hymenoptera: Formicidae), In South Dakota With Notes On Its Thermal Tolerance And Geographic Distribution, Karl A. Roeder, Skylar Drey, Jesse D. Daniels, Diane V. Roeder, Jackson A. Helms Iv

The Great Lakes Entomologist

The pavement ant, Tetramorium immigrans, is an abundant and widespread species across large portions of the United States. Yet despite its current distribution in Northeastern, Midwestern, Pacific, and Western states, there is a surprising lack of records from the Great Plains. Here we present an updated county list of T. immigrans from museum collections and research grade observations (459 counties; ~15% of US counties), highlighting the first records from one Great Plains state—South Dakota. Observations on community science platforms since 2006 have undoubtedly increased the awareness of T. immigrans (+329 counties; ~72% of all county records), however we posit …

Design And Test The Effectiveness Of Interpretive Signs Using Eye Tracking And Biometric Data, Hadara Gordon, Wendy Miyazaki

Baker/Koob Endowments Awarded Projects

Recreational trails on forested lands should satisfy the needs of recreationists, safeguard important habitats, and maintain the natural environment (Kortenkamp et al., 2021). Appropriate management is critical because of the increasing number of visitors. Signs are a cost-effective method to reduce the negative impacts on visitors and enhance visitor experiences (Brown et al., 2010). This research aimed to investigate how visitors pay attention to signs, view the trail surrounded by trees and behave in a natural space.

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

Herptile Gut Microbiomes: A Natural System To Study Multi-Kingdom Interactions Between Filamentous Fungi And Bacteria, Lluvia Vargas-Gastélum, Alexander S. Romer, Marjan Ghotbi, Jason W. Dallas, Reed. N. Alexander, Kylie C. Moe, Kerry L. Mcphail, George F. Neuhaus, Leila Shadmani, Joseph W. Spatafora, Jason E. Stajich, Javier F. Tabima, Donald M. Walker

Biology

Reptiles and amphibians (herptiles) are some of the most endangered and threatened species on the planet and numerous conservation strategies are being implemented with the goal of ensuring species recovery. Little is known, however, about the gut microbiome of wild herptiles and how it relates to the health of these populations. Here, we report results from the gut microbiome characterization of both a broad survey of herptiles, and the correlation between the fungus Basidiobolus, and the bacterial community supported by a deeper, more intensive sampling of Plethodon glutinosus, known as slimy salamanders. We demonstrate that bacterial communities sampled from frogs, …

Image-Based Multiplex Immune Profiling Of Cancer Tissues: Translational Implications. A Report Of The International Immuno-Oncology Biomarker Working Group On Breast Cancer., Chowdhury Arif Jahangir, David B. Page, Glenn Broeckx, Claudia A. Gonzalez, Caoimbhe Burke, Clodagh Murphy, Jorge S. Reis-Filho, Amy Ly, Paul Harms, Shahin Sayed

Pathology, East Africa

Recent advances in the field of immuno-oncology have brought transformative changes in the management of cancer patients. The immune profile of tumours has been found to have key value in predicting disease prognosis and treatment response in various cancers. Multiplex immunohistochemistry and immunofluorescence have emerged as potent tools for the simultaneous detection of multiple protein biomarkers in a single tissue section, thereby expanding opportunities for molecular and immune profiling while preserving tissue samples. By establishing the phenotype of individual tumour cells when distributed within a mixed cell population, the identification of clinically relevant biomarkers with high-throughput multiplex immunophenotyping of tumour …