Digital Commons Network^™

Fish Assemblage Structure In Black Hills, South Dakota Streams, Luke D. Schultz, Sarah J. Lewis, Katie Nicole Bertrand

The Prairie Naturalist

Understanding factors structuring fish assemblages in a particular area is valuable to both sport fishery management and native species conservation. Fish assemblages in the Black Hills are unique to South Dakota because they contain economically valuable introduced salmonids as well as native species of conservation need. Our objective was to examine the relationship between fish assemblages and geomorphic and reach-scale habitat features across multiple stream reaches in the Black Hills. Canonical correspondence analysis, a direct gradient ordination analysis, indicated that factors operating at multiple spatial scales interacted to structure fish assemblages. There also was indication of segregation between native species …

Using Biophysical Geospatial And Remotely Sensed Data To Classify Ecological Sites And States, Carson A. Stam

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Within the Intermountain West, vast expanses of big sagebrush shrubland and steppe are considered emblems of the western range. Currently, there are approximately 60 million hectares of big sagebrush within the 11 western states, four million of which are in the state of Utah. However, the historic distribution of sagebrush has been impacted by conversion to other types of land cover through juniper encroachment, urbanization, invasive weeds, and agricultural expansion. In Utah alone, big sagebrush communities have been reduced to approximately 55% of their historic extent. A primary and current example of the cumulative impact of big sagebrush loss is …

Habitat Modeling Of Three Endemic Crayfish Species In The Black River Drainage Of Missouri And Arkansas: Factors Affecting Distribution And Abundance, Matthew Stephen Nolen

Graduate Theses and Dissertations

The Ozark faunal region of Missouri and Arkansas harbors a high level of aquatic biological diversity, especially in regards to endemic crayfish. Orconectes eupunctus, Orconectes marchandi, and Cambarus hubbsi are three such endemics that are threatened by a limited natural distribution and the invasions of Orconectes neglectus. I sought to determine how natural and anthropogenic factors influence these three species across multiple spatial scales. Local and landscape data were used in decision tree analyses (CART) to determine their influence effect on presence/absence and density of the three species. Predictive models were validated using k-fold cross validation. O. eupunctus presence was …

Genetic Diversity, Local Differentiation, And Adaptive Evolution In Introduced Populations Of The Invasive Plant Isatis Tinctoria L. (Brassicaceae), Heather L. Simpson

Biology ETDs

Populations of invasive species are often characterized as genetically depauperate, an inherent consequence of the colonization process. It has also been suggested that species that are able to avoid these reductions in genetic diversity may be better able to adapt to their introduced range. Evolutionary change can play an important role in the invasion process if novel selective pressures drive adaptive evolution. Species that are able to avoid reductions in genetic diversity associated with colonization may be better able to adapt to their introduced range. To better understand the genetic processes following invasion, introduced populations of the invasive mustard, Isatis …

Comparison Of Three Collection Techniques For Capture Of Coleoptera, With An Emphasis On Saproxylic Species, In Great Smoky Mountains National Park, Usa, Michael L. Ferro, Matthew L. Gimmel, Kyle E. Harms, Christopher E. Carlton

Insecta Mundi

Collection methods and/or habitats sampled influence how many and which species are captured during entomological surveys. Here we compare Coleoptera catches among three survey activities, each using a single collection method, at the same study sites in Great Smoky Mountains National Park, USA. Activities included: short-term flight intercept trapping (FITs); sifting/Berlese funneling of leaf litter and extremely decayed downed coarse woody debris; and using emergence chambers containing coarse woody debris of various decay classes. In total, 2472 adult beetle specimens, representing 217 lowest identifiable taxa within 164 genera and 42 families, were collected during the FIT survey. Each survey activity …

The Principal Genetic Determinants For Nasopharyngeal Carcinoma In China Involve The Hla Class I Antigen Recognition Groove, Minzhong Tang, J. A. Lautenberger, Xiaojiang Gao, Efe Sezgin, Sher L. Hendrickson, Jennifer L. Troyer, Victor A. David, Li Guan, Carl Mcintosh, Xiuchan Guo, Yuming Zheng, Jian Liao, Hong Deng, Michael Malasky, Bailey Kessing, Cheryl Winkler, Mary Carrington, Guy De The, Yi Zeng, Stephen J. O'Brien

Biology Faculty Articles

Nasopharyngeal carcinoma (NPC) is an epithelial malignancy facilitated by Epstein-Barr Virus infection. Here we resolve the major genetic influences for NPC incidence using a genome-wide association study (GWAS), independent cohort replication, and high-resolution molecular HLA class I gene typing including 4,055 study participants from the Guangxi Zhuang Autonomous Region and Guangdong province of southern China. We detect and replicate strong association signals involving SNPs, HLA alleles, and amino acid (aa) variants across the major histocompatibility complex-HLA-A, HLA –B, and HLA -C class I genes (P_{HLA-A-aa-site-62}= 7.4×10⁻²⁹; P _{HLA-B-aa-site-116}= 6.5×10⁻¹⁹; P _{HLA-C-aa-site-156} = 6.8×10 …

Secondary Contact And Admixture Between Independently Invading Populations Of The Western Corn Rootworm, Diabrotica Virgifera Virgifera In Europe, Gérald Bermond, Marc Ciosi, Eric Lombaert, Aurélie Blin, Marco Boriani, Lorenzo Furlan, Stefan Toepfer, Thomas Guillemaud

All Peer-Reviewed Publications

The western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae), is one of the most destructive pests of corn in North America and is currently invading Europe. The two major invasive outbreaks of rootworm in Europe have occurred, in North-West Italy and in Central and South-Eastern Europe. These two outbreaks originated from independent introductions from North America. Secondary contact probably occurred in North Italy between these two outbreaks, in 2008. We used 13 microsatellite markers to conduct a population genetics study, to demonstrate that this geographic contact resulted in a zone of admixture in the Italian region of Veneto. We show …

Open Release Of Male Mosquitoes Infected With A Wolbachia Biopesticide: Field Performance And Infection Containment, Linda O'Connor, Catherine Plichart, Ayo Cheong Sang, Corey L. Brelsfoard, Hervé C. Bossin, Stephen L. Dobson

Entomology Faculty Publications

BACKGROUND: Lymphatic filariasis (LF) is a globally significant disease, with 1.3 billion persons in 83 countries at risk. A coordinated effort of administering annual macrofilaricidal prophylactics to the entire at-risk population has succeeded in impacting and eliminating LF transmission in multiple regions. However, some areas in the South Pacific are predicted to persist as transmission sites, due in part to the biology of the mosquito vector, which has led to a call for additional tools to augment drug treatments. Autocidal strategies against mosquitoes are resurging in the effort against invasive mosquitoes and vector borne disease, with examples that include field …

Molecular Evolution And Phylogenetics Of Rodent Malaria Parasites, Ricardo S. Ramiro, Sarah E. Reece, Darren J. Obbard

Harold W. Manter Laboratory of Parasitology: Library Materials

Background: Over the last 6 decades, rodent Plasmodium species have become key model systems for understanding the basic biology of malaria parasites. Cell and molecular parasitology have made much progress in identifying genes underpinning interactions between malaria parasites, hosts, and vectors. However, little attention has been paid to the evolutionary genetics of parasites, which provides context for identifying potential therapeutic targets and for understanding the selective forces shaping parasites in natural populations. Additionally, understanding the relationships between species, subspecies, and strains, is necessary to maximize the utility of rodent malaria parasites as medically important infectious disease models, and for …

Phylogeny And Evolutionary Patterns In The Dwarf Crayfish Subfamily (Decapoda: Cambarellinae), C. Pedraza-Lara, I. Doadrio, J. Breinholt, Keith A. Crandall

Computational Biology Institute

The Dwarf crayfish or Cambarellinae, is a morphologically singular subfamily of decapod crustaceans that contains only one genus, Cambarellus. Its intriguing distribution, along the river basins of the Gulf Coast of United States (Gulf Group) and into Central México (Mexican Group), has until now lacked of satisfactory explanation. This study provides a comprehensive sampling of most of the extant species of Cambarellus and sheds light on its evolutionary history, systematics and biogeography. We tested the impact of Gulf Group versus Mexican Group geography on rates of cladogenesis using a maximum likelihood framework, testing different models of birth/extinction of lineages. We …

North American Bioactive Plants For Human Health And Performance, Maria Pontes Ferreira, Fidji Gendron, Katrina C. Mcclure, Kelly Kindscher

Nutrition and Food Science Faculty Research Publications

Native and naturalized bioactive plants of the Canadian and American temperate biome are examined for their health and performance enhancement properties. Some of these plants are now being used as natural health products, and many have a long history as traditional foods and/or medicines with indigenous groups. This paper reviews the medicinal/cultural uses and bioactive properties of selected plant families: the Holly family (Aquifoliaceae) as stimulants, the Celery family (Apiaceae) as normoglycemic aids and analgesics, the Ginseng family (Araliaceae) as energy- boosting aids, the Sunflower family (Compositae) as anti-inflammatory aids, and the Legume family (Fabaceae) and Nightshade family (Solanaceae) as …

Multifactorial Patterns Of Gene Expression In Colonic Epithelial Cells Predict Disease Phenotypes In Experimental Colitis, Aubrey Leigh Frantz, Maria E. C. Bruno, Eric William Rogier, Halide Tuna, Donald A. Cohen, Subbarao Bondada, Ralph Lakshman Chelvarajan, J. Anthony Brandon, C. Darrell Jennings, Charlotte S. Kaetzel

Microbiology, Immunology, and Molecular Genetics Faculty Publications

Background— The pathogenesis of inflammatory bowel disease (IBD) is complex and the need to identify molecular biomarkers is critical. Epithelial cells play a central role in maintaining intestinal homeostasis. We previously identified five “signature” biomarkers in colonic epithelial cells (CEC) that are predictive of disease phenotype in Crohn's disease. Here we investigate the ability of CEC biomarkers to define the mechanism and severity of intestinal inflammation.

Methods— We analyzed the expression of RelA, A20, pIgR, tumor necrosis factor (TNF), and macrophage inflammatory protein (MIP)-2 in CEC of mice with dextran sodium sulfate (DSS) acute colitis or T-cell-mediated chronic colitis. …

A Tale Of Two Zoos, Irus Braverman

Journal Articles

This short piece tells the story of the Israeli occupation through the relationship between two zoos: the Biblical Zoo in Jerusalem and the Qalqilya Zoo in the West Bank. Despite the insistence by all interviewees that the zoos’ animals exist beyond the contentious politics of this place, this essay demonstrates that the two zoos are deeply entangled in hegemonic relations. The Israelis have the animals, the professional means, and the education. And as they give, take, and educate their Palestinian counterparts, they also create and enforce the proper conservation standards, thereby controlling the meaning of care for zoo animals, both …

A Survey Of Spiders (Arachnida: Araneae) Of Prince Of Wales Island, Alaska; Combining Morphological And Dna Barcode Identification Techniques, Jozef Slowik, Gergin A. Blagoev

Insecta Mundi

Surveys during the summer of 2004 and August 2009 on Prince of Wales Island, Alaska, USA resulted in collection of 1064 adult spiders representing 84 species. Barcoding of spiders collected in 2009 resulted in DNA barcode data for 212 specimens representing 63 species. DNA barcode data were then used to facilitate the identification of otherwise unidentifiable juvenile and female specimens as well as to investigate phylogenetically four lineages with large branch lengths between specimens. Using morphological and DNA barcode identifications provided a more complete list of identified specimens than was possible using morphological data alone.

Influence Of The Marine Environment Variability On The Yellowfin Tuna (Thunnus Albacares) Catch Rate By The Taiwanese Longline Fishery In The Arabian Sea, With Special Reference To The High Catch In 2004, Kuo-Wei Lan, Tom Nishida, Ming-An Lee, Hsueh-Jung Lu, Hsiang-Wen Huang, Shui-Kai Chang, Yang-Chi Lan

Journal of Marine Science and Technology–Taiwan

In this study, we collected Taiwanese longline (LL) fishery data and environment variables during the period of 1998- 2004 to investigate the relationship between LL catch data of yellowfin tuna (YFT) and oceanic environmental factors using a principal component analysis (PCA). Results of the PCA showed that monthly variations in catch per unit effort (CPUE) values were significantly correlated with the sea surface temperature (SST), subsurface temperature at 105 m, thermocline depth (horizontal) gradient magnitude, chlorophyll-a concentration, and fish size. April and May were the warmest months of the year in terms of the SST, and the thermocline was generally …

Assessing Climate Change Impacts On Streamflow In South Carolina's River Basins, Aashka Patel

S.C. Water Resources Conference

2012 S.C. Water Resources Conference - Exploring Opportunities for Collaborative Water Research, Policy and Management

Comparison Of Drought Indices And Sc Drought Alert Phases, Ekaterina Altman

S.C. Water Resources Conference

S.C. Water Resources Conference - Exploring Opportunities for Collaborative Water Research, Policy and Management

Efficacy And Costs Of Controlling Eastern Redcedar, John Ortmann, James L. Stubbendieck, Robert A. Masters, George H. Pfeiffer, Thomas B. Bragg

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

(Juniperus virginiana L.) is reducing grassland productivity across much of the Great Plains. Control methods include broadcast prescribed fire, herbicides, cutting, and individual tree ignition. All methods have disadvantages when used alone. Fire can be ineffective against larger trees. Intensive methods can be too expensive for low-productivity grasslands. The objectives of this research were to determine the effects of broadcast prescribed fie alone as measured at 3 weeks after fire; to compare the effects of picloram herbicide application with or without fire, sawing with or without fire, and individual tree ignition with fire; and to compare all treatment costs. …

The Role Of Landscape Connectivity In Planning And Implementing Conservation And Restoration Priorities. Issues In Ecology, Doborah Rudnick, Sadie J. Ryan, Paul Beier, Samual A. Cushman, Fred Dieffenbach, Clinton Epps, Leah R. Gerber, Joel N. Hartter, Jeff S. Jenness, Julia Kintsch, Adina M. Merenlender, Ryan M. Perkl, Damian V. Perziosi, Stephen C. Trombulack

Geography

Landscape connectivity, the extent to which a landscape facilitates the movements of organisms and their genes, faces critical threats from both fragmentation and habitat loss. Many conservation efforts focus on protecting and enhancing connectivity to offset the impacts of habitat loss and fragmentation on biodiversity conservation, and to increase the resilience of reserve networks to potential threats associated with climate change. Loss of connectivity can reduce the size and quality of available habitat, impede and disrupt movement (including dispersal) to new habitats, and affect seasonal migration patterns. These changes can lead, in turn, to detrimental effects for populations and species, …

Interactions Between Short-Beaked Common Dolphin (Delphinus Delphis) And The Winter Pelagic Pair-Trawl Fishery Ff Southwest England (Uk), Marijke N. De Boer, James T. Saulino, Mardik F. Leopold, Peter J.H. Reijnders, Mark P. Simmonds

Aquaculture Collection

During offshore and onshore studies (2004 to 2009), the interactions between pair-trawls and short-beaked common dolphins (Delphinus delphis) were studied to better understand the impact of bycatch. A ‘hotspot’ area where pair-trawls overlapped with high dolphin abundance was identified. We made comparisons between boat-based data collected in absence and presence of pair-trawlers. The relative abundance and group-size of dolphins was significantly higher in the presence of pair-trawlers. Dolphins were observed associating with towing and hauling procedures. Significantly, more carcasses occurred in areas with hauling-activity than those without. Body-temperatures obtained from carcasses found near operating pair-trawlers indicated that bycatch mostly occurred …

Developing A Restorable Wetland Index For Rainwater Basin Wetlands In South-Central Nebraska: A Multi-Criteria Spatial Analysis, Zhenghong Tang, Xu Li, Nan Zhao, Ruopu Li, F. Edwin Harvey

Community and Regional Planning Program: Faculty Scholarly and Creative Activity

It is always challenging for decision makers to prioritize wetland conservation programs at the landscape scale. This study employed a GIS-based multi-criteria spatial decision support tool that identified locations with the highest restoration potential for wetland conservation programs in the Rainwater Basin in south-central Nebraska. Five indicators were considered to assess wetland restoration potential: (1) Vegetation characteristics; (2) Soil characteristics; (3) Water volume released from hydrological modification of agricultural irrigation pits; (4) Topographical depression status; and (5) Habitat condition. The results suggested 192 (1.6% of the total) hydric soil footprints as the highest prioritized locations for future wetland restoration programs. …

Review Of Conspecific Attraction And Area Sensitivity Of Grassland Birds, David R.W. Bruinsma, Nicola Koper

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Many species of grassland birds are area sensitive, which may exacerbate the ecological effects of the extensive loss and fragmentation of grasslands that has taken place across the northern Great Plains. However, the reasons for this area sensitivity are unclear, as vegetation structure, matrix composition, and restriction of movements among patches do not seem to provide viable explanations for species native to grasslands. Con specific attraction, whereby species are behaviorally stimulated to select habitat or establish territories near individuals of the same species, may help explain this area sensitivity. We review and discuss theoretical and empirical research on avian conspecific …

New Distributional Records Of Great Plains Pseudo Scorpions (Arachnida: Pseudoscorpiones), Paul O. Cooney, James A. Kalisch

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Pseudoscorpions are tiny, oval, brown, flattened arachnids that possess large "pinchers" in front of the body for capturing smaller prey. They generally live in forested habitats in soil litter or beneath loose bark. It has been presumed that pseudoscorpions are scarce in the Great Plains, except for along rivers, due to harsh climatic conditions. However, new records of pseudo scorpions from the Great Plains were derived from identification of specimens obtained from university and college collections, and from specimens collected by the first author. Records provided new revelations about distributions of not only the more commonly known pseudoscorpion species but …

Initial Changes In Species Cover Following Savanna Restoration Treatments In Western Iowa, David A. Mckenzie, Thomas B. Bragg, David M. Sutherland

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Study areas in the Iowa Loess Hills were used to evaluate short-term responses of understory species to three treatment methods designed to facilitate restoration of Quercus macrocarpa savanna. Treatments included burning alone, burning with thinning, and burning with clear-cutting. Plant abundance and diversity were compared before treatment and one year after treatment. Ninety-nine plant species were identified during the study, of which 40 were new following treatment, although most of these were forest associates. Increases in diversity of understory species were observed after treatment, particularly in plots with combined burning and thinning. The forb group was most consistent in response …

Camera Trap Success Among Carnivores And Prey Animals In Tazewell County, Virginia, David L. Chambers, James A. Vance

Virginia Journal of Science

Obtaining basic ecological information on occurrence and activity levels in cryptic and elusive species is often difficult. Camera trapping provides a relatively inexpensive opportunity to acquire such data. We used infrared-triggered cameras to assess trap success and activity levels of several species across four consecutive seasons, including: Ursus americanus (black bear), Lynx rufus (bobcat), Canis latrans (coyote), Vulpes vulpes (red fox), Urocyon cinereoargenteus (gray fox), Procyon lotor (raccoon), Odocoileus virginianus (white-tailed deer), Didelphis virginiana (opossum), Sciurus carolinensis (gray squirrel), and Meleagris gallopavo (wild turkey). With a total of 396 trap nights (TN) at one station over the span of four …

Ecology Of Vibrio Parahaemolyticus And Vibrio Vulnificus In The Coastal And Estuarine Waters Of Louisiana, Maryland, Mississippi, And Washington (United States), Crystal N. Johnson, John C. Bowers, Kimberly J. Griffitt, Vanessa Molina, Rachel W. Clostio, Shaofeng Pei, Edward Laws, Rohinee N. Paranjpye, Mark S. Strom, Arlene Chen, Nur A. Hasan, Anwar Huq, Nicholas F. Noriea Iii, D. Jay Grimes, Rita R. Colwell

Faculty Publications

Vibrio parahaemolyticus and Vibrio vulnificus, which are native to estuaries globally, are agents of seafood-borne or wound infections, both potentially fatal. Like all vibrios autochthonous to coastal regions, their abundance varies with changes in environmental parameters. Sea surface temperature (SST), sea surface height (SSH), and chlorophyll have been shown to be predictors of zooplankton and thus factors linked to vibrio populations. The contribution of salinity, conductivity, turbidity, and dissolved organic carbon to the incidence and distribution of Vibrio spp. has also been reported. Here, a multicoastal, 21-month study was conducted to determine relationships between environmental parameters and V. parahaemolyticus …

Deep Diversification And Long-Term Persistence In The South American ‘Dry Diagona’: Integrating Continent-Wide Phylogeography And Distribution Modeling Of Geckos, Fernanda P. Werneck, Tony Gamble, Guarino R. Colli, Miguel T. Rodrigues, Jack W. Sites Jr.

Biological Sciences Faculty Research and Publications

The relative influence of Neogene geomorphological events and Quaternary climatic changes as causal mechanisms on Neotropical diversification remains largely speculative, as most divergence timing inferences are based on a single locus and have limited taxonomic or geographic sampling. To investigate these influences, we use a multilocus (two mitochondrial and 11 nuclear genes) range‐wide sampling of Phyllopezus pollicaris, a gecko complex widely distributed across the poorly studied South American ‘dry diagonal’ biomes. Our approach couples traditional and model‐based phylogeography with geospatial methods, and demonstrates Miocene diversification and limited influence of Pleistocene climatic fluctuations on P. pollicaris. Phylogeographic structure and …

A Value Assessment Of The Gordon Natural Area Of Environmental Studies At The West Chester University Of Pennsylvania, Brandon Nye, Ben Keller, Travis Decaro

Gordon Natural Area History & Strategic Plan Documents

No abstract provided.

“A Place For The Grassroots”: Examining The Role Of Community Participation And Local Governance In Providing Mid-Day Meals In Lucknow District, Uttar Pradesh, Anderson Tuggle

Independent Study Project (ISP) Collection

The Mid-Day Meal Scheme (MDMS)—the world’s largest school lunch program—was launched by India’s central government in August 1995 with the lofty goals of “enhancing enrollment, retention, and attendance while simultaneously improving nutritional levels among children.”[1] 17 years later, particularly following prominent Supreme Court orders in November 2001 and April 2004, MDMS has become a key program for the government, now serving about 105 million primary and upper-primary schoolchildren in 1.2 million schools.[2] When implemented properly, MDMS has had a noticeable positive impact on student attendance and enrollment, alongside a reduction in teacher absenteeism. Yet grave disparities in application …

Life History Of Stranded Bottlenose Dolphins (Tursiops Truncatus) In Virginia, Margaret Cook Lynott

Biological Sciences Theses & Dissertations

Little is known about the life history and overall ecology of bottlenose dolphins that strand in Virginia. In this study, I examined archived life history samples and stranding data from bottlenose dolphins found in Virginia waters to (1) develop growth curves based on ages from sectioned teeth, (2) document characteristics of male and female reproductive organs, and (3) define the relationship between age/length and presence of neonatal characteristics during the first year of life. The Gompertz growth model provided the best fit of growth data for stranded T. truncatus in Virginia. Length at birth and asymptotic length for males were …