Digital Commons Network^™

A River Continuum Analysis Of An Anthropogenically-Impacted System: The Little Bear River, Utah, Wayne A. Wurtsbaugh, Nicholas A. Heredia, Patsy Palacios, Jared Baker, Chance Broderius, Katie Fisher, Jason Fuller, G. Andrew Pappas, Christian Smith, Marc Weston

Watershed Sciences Faculty Publications

In September 2012 the Aquatic Ecology Practicum class from Utah State University studied the 51km river continuum of the Little Bear River located in northern Utah (Figure 1). The relatively pristine headwaters of the river begin in the Wasatch Mountain Range at an altitude of 1800 m. The river flows northward into Cache Valley where it terminates in Cutler Reservoir (1345 m elevation). Agricultural development and urbanization have modified the natural terrain and chemical characteristics of the river, and Hyrum Reservoir, located midway along the gradient causes a discontinuity in river processes. The results from analyses of stream condition indicators …

Transcriptome Deep-Sequencing And Clustering Of Expressed Isoforms From Favia Corals, Shaadi F. Pooyaei Mehr, Rob Desalle, Hung-Teh Kao, Apurva Narechania, Zhou Han, Dan Tchernov, Vincent A. Pieribone, David F. Gruber

Publications and Research

Background: Genomic and transcriptomic sequence data are essential tools for tackling ecological problems. Using an approach that combines next-generation sequencing, de novo transcriptome assembly, gene annotation and synthetic gene construction, we identify and cluster the protein families from Favia corals from the northern Red Sea.

Results: We obtained 80 million 75 bp paired-end cDNA reads from two Favia adult samples collected at 65 m (Fav1, Fav2) on the Illumina GA platform, and generated two de novo assemblies using ABySS and CAP3. After removing redundancy and filtering out low quality reads, our transcriptome datasets contained 58,268 (Fav1) and 62,469 (Fav2) contigs …

Evaluation Of The Efficacy Of 1-Octen-3-Ol And Carbon Dioxide Chemoattractants With Mosquitoes And Bloodmeal Analysis Of Culex Mosquito Spp. In Lancaster County, Nebraska, Julianne N. Matczyszyn

Department of Entomology: Dissertations, Theses, and Student Research

The purpose of mosquito-borne disease surveillance is to assess the risk of pathogen transmission by assessing mosquito populations and the prevalence of disease pathogens in those populations. West Nile virus (WNV) is an important mosquito-borne virus in Nebraska, and can be transmitted by several mosquito species found in Lancaster County, Nebraska, including Culex pipiens L., Culex salinarius Coquillett, Culex restuans Theobald, Culex tarsalis Coquillett, Culex territans Walker, and Culex erraticus Dyar & Knab. These species are ornithophilic, yet many studies indicate a shift in host feeding to mammalian in late summer months. One-octen-3-ol (octenol) can be isolated …

Utilizing Remote Sensing And Geospatial Techniques To Determine Detection Probabilities Of Large Mammals, Patricia A. Terletzky-Gese

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Whether a species is rare and requires protection or is overabundant and needs control, an accurate estimate of population size is essential for the development of conservation plans and management goals. Wildlife science has traditionally relied on human observers in airplanes, helicopter, or ground vehicles to count the number of individuals seen during wildlife surveys. However, these traditional surveys of wildlife require significant resources, are difficult to conduct quickly and safely over remote and/or extensive locations, are disruptive to the studied species, and are prone to significant error due to unobserved or missed animals and multiple counts of single animals. …

Reproductive Isolation And Cryptic Introgression In A Sky Island Enclave Of Appalachian Birds, Gene D. Sattler, Michael J. Braun

Faculty Publications and Presentations

Reproductive isolation is central to the speciation process, and cases where the strength of reproductive isolation varies geographically can inform our understanding of speciation mechanisms. Although generally treated as separate species, Black-capped chickadees (Poecile atricapillus) and Carolina chickadees (P. carolinensis) hybridize and undergo genetic introgression in many areas where they come into contact across the eastern United States and in the northern Appalachian Mountains. The Great Smoky Mountains harbor the last large breeding population of atricapillus in the southern Appalachians, isolated from the species’ main range by nearly 200 km. This population is believed to be reproductively isolated from local …

Local Adaptation To Climate Change In A Calcareous Grassland System, Catherine Ravenscroft

Biology - Dissertations

Annual manipulations of temperature and rainfall have been maintained in intact calcareous grassland since 1993 at the Buxton Climate Change Impacts Laboratory (BCCIL) in northern England (UK). Here I investigated the role of local adaptation as mechanism of the apparent resistance of species' to long-term climate manipulations at BCCIL using a common forb, Plantago lanceolata. Plantago lanceolata is a rosette-forming, perennial herb of wide-ranging distribution, and one of the more common forbs in calcareous grasslands, including BCCIL. In the first study I used a common garden approach to test for evidence of selection for different suites of functional traits in …

Science Fair: Is It Worth The Work? A Qualitative Study On Deaf Students' Perceptions And Experiences Regarding Science Fair In Primary And Secondary School, Vivian Lee Smith

Dissertations

Science fairs have a long history in American education. They play an important role for establishing inquiry-based experiences in a science classroom. Students may be more motivated to learn science content when they are allowed to choose their own science fair topics. The purpose of this study was to examine Deaf college students’ perceptions and experiences regarding science fair participation during primary and/or secondary school and determine the influence of science fair involvement on the development of language skills, writing skills, and higher order thinking skills as well as its impact on choice of a STEM major.

This study examined …

Factors Influencing The Distribution And Structure Of Tropical Vascular Epiphyte Communities At Multiple Scales, Carrie Woods

All Dissertations

Understanding the factors that determine species distributions is a central question in ecology. Niche-based theories stress the importance of environmental heterogeneity in influencing species distributions while neutral-based theories emphasize the effects of dispersal limitation. The relative importance of these factors in influencing species distributions may depend on spatial scale - deterministic factors may be more important at small spatial scales where fine-scale habitat factors become more relevant and stochastic factors may be more important at larger spatial scales where dispersal limitation becomes more relevant. I examined the influence of deterministic and stochastic factors on the distribution and structure of vascular …

The River Otter In Idaho: Reproductive And Population Parameters And Liver Concentrations Of Environmental Contaminants, Gina Diggs

Boise State University Theses and Dissertations

To obtain current data on the North American river otter (Lontra canadensis) population in Idaho, licensed trappers were mandated to surrender river otter carcasses through provisions of the Idaho Department of Fish and Game’s mandatory harvest report. Throughout the 2002-2003 and 2003-2004 trapping seasons, 237 river otter carcasses were collected. Necropsies were performed to assess age and sex, general body condition, reproductive rates, and concentrations of environmental contaminants in the livers. Reproductive rates were determined by counting corpora lutea and blastocysts in female river otters. Livers were dissected and concentrations of environmental contaminants were determined for the following …

Warming Winters And Changing Habitats: Interactive Effects On Raptor Populations And Implications For Conservation, Neil A. Paprocki

Boise State University Theses and Dissertations

Studies across multiple spatial and temporal scales will improve understanding of the drivers of global change including habitat degradation, invasive species, and climate change. How global drivers affect the ecology of wintering raptors in western North America and the Great Basin may have important implications for changes in distribution and abundance, and consequently population persistence. I examined the winter distributions of six western North America raptor species using Christmas Bird Count data from 1975-2011 to assess range shifts over time and in relation to temperature. Also, I considered whether population patterns within Bird Conservation Regions (BCR) were best explained by …

A Glyptosaurine Lizard From The Eocene (Late Uintan) Of San Diego, California, And Implications For Glyptosaurine Evolution And Biogeography, David Moscato

Electronic Theses and Dissertations

Glyptosaurinae is an extinct subfamily of lizards of the family Anguidae. Glyptosaurine lizards are known exclusively from the Paleogene of North America and Eurasia, reaching their peak of diversity and distribution in the Eocene. In North America these lizards are largely restricted to the intermontane basins along the Rocky Mountain range, with only sparse, indeterminately-identified skeletal elements known from outside of this region. Glyptosaurine lizards are split into two tribes: the monophyletic Glyptosaurini and paraphyletic “Melanosaurini”. Within Glyptosaurini, the most common and widespread genus is Glyptosaurus. In this study I describe a new specimen assignable to G. sylvestris, …

Comparing Mechanical Mastication, Herbicide Application, And Prescribed Fire Within An Established Longleaf Pine (Pinus Palustris Mill.) Ecosystem, Brett Moule

All Dissertations

Longleaf pine (Pinus palustris Mill.) forests once dominated the landscape throughout the Southeast and much of its success could be attributed to ecological disturbances such as fire. However, the use of fire as a management tool may be at risk due to a growing human population, negative impacts resulting from smoke production, and the imposition of restrictive federal and state laws, policies, and standards. This study was designed to determine whether alternative silviculture treatments such as herbicide or mechanical mastication can be used as surrogates to prescribed fire. We applied three commonly used silviculture treatments (prescribed burning, mechanical mastication, …

Influences Of Riparian Land-Uses On Habitat Use And Interspecific Competition Of Stream-Dwelling Salamanders: Evidence From Blue Ridge & Piedmont, Thilina Surasinghe

All Dissertations

Human-induced disturbances can result in persistent influences on ecosystems, including habitat loss and biogeographical changes. Global amphibian decline, a consequence of habitat degradation, is among prime conservation concerns. To better understand causes of the amphibian crisis, investigations a multiple levels of biological organization - behavior, communities, and landscapes - is imperative. I investigated the responses of stream-associated Plethdontid salamanders of the Blue Ridge and Piedmont of the Southeastern US to historical and current land uses in the riparian zone and watershed to determine, (1) change in the community structure and mechanisms driving the change and uses operating at different spatial-temporal …

Failed Species, Innominate Forms, And The Vain Search For Species Limits: Cryptic Diversity In Dusky Salamanders (Desmognathus) Of Eastern Tennessee, Stephen G. Tilley, Joseph Bernardo, Laura A. Katz, Lizmarie López, J. Devon Roll, Renáe L. Eriksen, Justin Kratovil, Noëlle K.J. Bittner, Keith A. Crandall

Biological Sciences: Faculty Publications

Cytochrome B sequences and allozymes reveal complex patterns of molecular variation in dusky salamander (Desmognathus) populations in eastern Tennessee. One group of allozymically distinctive populations, which we refer to as the Sinking Creek form (SCF), combines morphological attributes of Desmognathus fuscus with cytB sequences characteristic of Desmognathus carolinensis. This form is abruptly replaced by D. fuscus just north of Johnson City, TN with no evidence of either sympatry or gene exchange. To the south, allozymic markers indicate a broad zone of admixture with populations characterized by distinct cytB sequences and that may or may not be ultimately referable to Desmognathus …

Paleoecology Of Late Pleistocene Megaherbivores: Stable Isotope Reconstruction Of Environment, Climate, And Response, Aubrey Mae Bonde

UNLV Theses, Dissertations, Professional Papers, and Capstones

Late Pleistocene megaherbivore communities of the Pacific and Mountain West states of California and Nevada are under-analyzed in regard to ecological function (diet, mobility, niche partitioning, and range of ecological tolerance). Stable isotope analysis is a powerful tool that is known to recover primary paleodiet and paleoenvironmental information from biogenic materials, such as enamel and dentin. This dissertation explores the use of carbon and oxygen stable isotopes in Late Pleistocene (40-10 Ka) megaherbivore teeth to gain a better understanding of inter- and intra-specific behavior and reconstruct Late Pleistocene ecosystems of California and Nevada. Radiocarbon dates exist for most of the …

Influences Of Music Genre And Components On Food Perception And Acceptance, Alexandra Jean Fiegel

Graduate Theses and Dissertations

Managers of consumer goods companies (i.e., restaurants, grocery stores, and bars) have the potential to effectively utilize environmental factors to stimulate desired consumer behaviors. Background music has been identified as one of the most readily manipulated and influential elements to which a shopper or consumer may be exposed to in a service setting. Nevertheless, little is known about the effect of background sound on food perception and acceptance. This research sought whether background music genre and musical components can alter food perception and acceptance, but also to determine how the effect can vary as a function of food type (i.e., …

Remote Sensing Of Soil Moisture In Vineyards Using Airborne And Ground-Based Thermal Inertia Data, Aiman Soliman, Richard J. Heck, Alexander Brenning, Ralph Brown, Stephen Miller

Publications and Research

Thermal remote sensing of soil moisture in vineyards is a challenge. The grass-covered soil, in addition to a standing grape canopy, create complex patterns of heating and cooling and increase the surface temperature variability between vine rows. In this study, we evaluate the strength of relationships between soil moisture, mechanical resistance and thermal inertia calculated from the drop of surface temperature during a clear sky night over a vineyard in the Niagara region. We utilized data from two sensors, an airborne thermal camera (height ≈ 500 m a.g.l.) and a handheld thermal gun (height ≈ 1 m a.g.l.), to explore …

The View From The Table: An Analysis Of Participant Reactions To Community-Based Dialogues On Food And Justice, Jennifer Turner

Dissertations and Theses

While Portland, Oregon's sustainable food movement wins accolades for explicitly situating itself in opposition to the industrialized global food system, it often fails to address systems of oppression that are reproduced within the alternative agri-food movement itself. This demonstrated aversion towards the messy, complex, contingent nature of the social world reflects larger processes of "de-politicization" of the overall sustainability agenda, which leads to the favoring of technological and/or spatial solutions that may undermine the social equity and justice dimensions of the "triple bottom line." This thesis focuses on an action research project involving a series of community dialogues that provided …

Projecting Terrestrial Carbon Sequestration Of The Southeastern United States In The 21st Century, Xia Song, Hanqin Tian, Xiaofeng Xu, Dafeng Hui, Guangsheng Chen, Greg Sommers, Luke Marzen, Mingliang Liu

Biology Faculty Research

How terrestrial ecosystems respond to future environmental change in the 21st century is critically important for understanding the feedbacks of terrestrial ecosystems to global climate change. The southeastern United States (SEUS) has been one of the major regions acting as a carbon sink over the past century; yet it is unclear how its terrestrial ecosystems will respond to global environmental change in the 21st century. Applying a process-based ecosystem model (Dynamic Land Ecosystem Model, DLEM) in combination with three projected climate change scenarios (A1B, A2, and B1 from the IPCC report) and changes in atmospheric carbon dioxide, nitrogen deposition, and …

Remote Sensing Of Green Leaf Area Index In Maize And Soybean: From Close-Range To Satellite, Anthony L. Nguy-Robertson

School of Natural Resources: Dissertations, Theses, and Student Research

This dissertation seeks to explore alternative methodologies for estimating green leaf area index (LAI) and crop developmental stages. Specifically this research [1] developed an approach for creating a Moderate Resolution Imaging Spectroradiometer (MODIS) high spatial resolution product for estimating green LAI on the base of data collected using two different close-range sensors. It was determined that the vegetation indices (VIs) Wide Dynamic Range Vegetation Index (WDRVI) and Enhanced Vegetation Index 2 (EVI2) were capable of accurate estimation of green LAI from MODIS 250 m data using models developed from hyperspectral (RMSE < 0.69 m² m^-2; CV < 33%) or multispectral sensors (RMSE < 0.69 m² m^-2; …

James’S Rule And Causes And Consequences Of A Latitudinal Cline In The Demography Of John’S Snapper (Lutjanus Johnii) In Coastal Waters Of Australia, Mike Cappo, Ross J. Marriott, Stephen J. Newman

Fisheries Research Articles

Demographic parameters were derived from sectioned otoliths of John’s Snapper (Lutjanus johnii) from 4 regions across 9° of latitude and 23° of longitude in northern Australia. Latitudinal variation in size and growth rates of this species greatly exceeded longitudinal variation. Populations of John’s Snapper farthest from the equator had the largest body sizes, in line with James’s rule, and the fastest growth rates, contrary to the temperature size rule for ectotherms. A maximum age of 28.6 years, nearly 3 times previous estimates, was recorded and the largest individual was 990 mm in fork length. Females grew to a larger mean …

Identification Of Species Of Botryosphaeriaceae Causing Bot Gummosis In Citrus In California, A.O. Adesemoye, J.S. Mayorquin, D.H. Wang, M. Twizeyimana, S.C. Lynch, Akif Eskalen

Department of Plant Pathology: Faculty Publications

Members of the Botryosphaeriaceae family are known to cause Bot gummosis on many woody plants worldwide. To identify pathogens associated with Bot gummosis on citrus in California, scion and rootstock samples were collected in 2010 and 2011 from five citrusgrowing counties in California. Symptoms observed on citrus included branch cankers, dieback, and gumming. Various fungal species were recovered from necrotic tissues of branch canker and rootstock samples. Species were identified morphologically and by phylogenetic comparison as ‘Eureka’ lemon, ‘Valencia’, ‘Washington Navel’, ‘Fukumoto’, grapefruit, ‘Satsuma’, and ‘Meyer’ lemon. Species were identified morphologically and by phylogenetic comparison of the complete sequence of …

Biogeography And Evolution Of Neotropical Small Mammals, With Emphasis On Hystricognath Spiny Rats Of The Genus Proechimys (Family Echimyidae), Rafael Do Nascimento Leite

Theses and Dissertations

The Neotropical region is the most biologically diverse region on the planet. The region encompasses a variety of ecosystems and has long been the target of researchers interested in patterns of species diversity and distribution. More recently, molecular data have been incorporated into methods for reconstructing the historical relationships among geographical areas and their biotas. Molecular phylogenetics has provided insights into diversification patterns and the influence of Late Cenozoic events on the evolutionary history of the region. Nevertheless, considering the vast extent and complexity of the region, more studies are needed to fully appreciate the patterns of biogeography and the …

Researching Market And Supply-Chain Opportunities For Local Foods Systems: Setting Priorities And Identifying Linkages, Dawn Thilmany, David Conner, Kynda R. Curtis, Chyi-Lyi Kathleen Liang, Kranti Mulik, Jeffrey O'Hara, Martha Sullins, Timothy A. Woods

Agricultural Economics Faculty Publications

There is an increasing array of land-grant, nonprofit, and other academic programs intended to support the development of food system enterprises and programs. However, research to track consumers' evolving preferences and behaviors within these systems and to measure the intended policy outcomes of any public investments in these systems is lagging. This research commentary represents a compilation of opinions and insights from those who are interested in exploring research priorities for economic, marketing, and supply-chain aspects of local food systems. The priorities that emerge are framed in the following way: (1) opportunities for increased and more targeted research to help …

Older Adolescents’ Self-Determined Motivations To Disclose Their Hiv Status, Ann Gillard, Mark F. Roark

Kinesiology and Health Science Faculty Publications

Disclosure of HIV status is an important topic for youth living with HIV/AIDS, yet theoretical frameworks for understanding HIV disclosure motivations have been poorly applied. Self-determination theory (SDT) proposes that people are at optimal functioning when they are engaging in activities that are interesting and enlivening. This study utilized SDT to understand young adults’ motivations to disclose their HIV status. Interviews and observations were conducted with nine youth aged 17–19 and two adult staff. Results indicate that SDT is useful for understanding types of motivation (i.e., amotivation, controlled, and autonomous motivation) to disclose. Amotivation was the most common type of …

Effect Of Lactose Monolaurate And High Intensity Ultrasound On Crystallization Behavior Of Anydrous Milk Fat, Ashwini Wagh, M. K. Walsh, Silvana Martini

Nutrition, Dietetics, and Food Sciences Faculty Publications

Crystallization behavior of anhydrous milk fat (AMF) was studied with the addition of 0.025 and 0.05 % lactose monolaurate (LML). The crystallization behavior was studied at low (ΔT = 3 °C) and high supercooling (ΔT = 6 °C). Polarized light microscopy and laser turbidimetry indicated a delay in crystallization on addition of 0.025 % and 0.05 % LML or Tween 20 to AMF. High intensity ultrasound (HIU) was applied to AMF samples with 0.05 % LML and lower supercooling (T c = 31 °C; ΔT = 3 °C). HIU application in AMF and AMF + 0.05 % LML induced crystallization …

Towards A Structured Approach To Reading Historic Cookbooks, Máirtín Mac Con Iomaire

Articles

This article discusses the methodology Barbara Ketchum Wheaton uses in her Reading historic Cookbook Seminars in Harvard and elsewhere and discusses from a participants perspective the strenghts of using this methodology to unlock hidden secrets of historic cookbooks.

Understory Diversity And Succession On Coarse Woody Debris In A Coastal, Old-Growth Forest, Oregon, Shannon Lee Mcdonald

Dissertations and Theses

This research examines the relationship between understory plant diversity and logs in a Pacific Northwest (PNW) Sitka spruce (Picea sitchensis)-western hemlock (Tsuga heterophylla) old-growth, coastal forest. These forests are renowned for their high forest productivity, frequent wind storms, and slow log decomposition rates that produce unmatched accumulations of coarse woody debris (CWD) yet few studies have examined the relationship between CWD and understory vegetation ecology. My research addressed this topic by comparing understory plant census data between paired fallen log and forest floor sites (n=20 pairs). My objectives were to: 1) determine the influence of substrate type on community composition …

Preserving Nature Through Film: Wilderness Alps Of Stehekin And The North Cascades, 1956-1968, Nicolas Timothy Bergmann

Dissertations and Theses

On March 22, 1958 David Brower's film Wilderness Alps of Stehekin premiered to an audience of conservationists in Seattle, Washington. Almost two years in the making, the thirty-one minute film advocated the preservation of nature in Washington's North Cascades through the creation of a national park. Over the next decade, Wilderness Alps of Stehekin became the most influential publicity tool in the struggle to preserve the North Cascades. Because of the region's geographic isolation, the film was the first time many people throughout the nation were exposed to the scenic grandeur of the area. Images of craggy peaks and colorful …

Ectoparasites Of The Virginia Opossum (Didelphis Virginiana), Raccoon (Procyon Lotor), And Striped Skunk (Mephitis Mephitis) From Keith County, Nebraska, Lance A. Durden, Dennis J. Richardson

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Six Virginia opossums (Didelphis virginiana), nine raccoons (Procyon lotor) and one striped skunk (Mephitis mephitis) collected from Keith County Nebraska were examined for ectoparasites. All three host species were parasitized by adults of the American dog tick, Dermacentor variabilis. Opossums were also parasitized by the flea Pulex simulans and the tiny fur mite Didelphilichus serri­fer; the latter species represents a new state record for Nebraska. Raccoons were also parasitized by P. simulans and by the lago­morph-associated flea Euhoplopsyllus glacialis affinis, whereas the skunk was also parasitized by the chewing louse Neotrichodectes …