Digital Commons Network^™

Use Of Dead Mussel Shells By Madtom Catfishes In The Green River, Jacob F. Brumley, Philip W. Lienesch

Southeastern Fishes Council Proceedings

The Green River in Kentucky has high fish and macroinvertebrate diversity. As both fish and macroinvertebrates have evolved together in this system, relationships have developed between species. One type of relationship that has been observed is between madtom catfishes (Noturus spp.) and mussels in the Green River, where madtoms use dead mussel shells as cover when not actively foraging. In the fall of 2016 and 2017, surveys were conducted to determine if madtom catfishes use dead mussel shells more than rocks of similar size. We predicted that madtoms would select mussel shells as cover more frequently than rocks due …

Uncovering The Role Of Symbiodiniaceae Assemblage Composition And Abundance In Coral Bleaching Response By Minimizing Sampling And Evolutionary Biases, Timothy D. Swain, Simon Lax, Vadim Backman, Luisa A. Marcelino

Marine & Environmental Sciences Faculty Articles

Background

Biodiversity and productivity of coral-reef ecosystems depend upon reef-building corals and their associations with endosymbiotic Symbiodiniaceae, which offer diverse functional capabilities to their hosts. The number of unique symbiotic partners (richness) and relative abundances (evenness) have been hypothesized to affect host response to climate change induced thermal stress. Symbiodiniaceae assemblages with many unique phylotypes may provide greater physiological flexibility or form less stable symbioses; assemblages with low abundance phylotypes may allow corals to retain thermotolerant symbionts or represent associations with less-suitable symbionts.

Results

Here we demonstrate that true richness of Symbiodiniaceae phylotype assemblages is generally not discoverable from …

The Importance Of The Northeastern Gulf Of Mexico To Foraging Loggerhead Sea Turtles, Kristen M. Hart, Margaret M. Lamont, Autumn R. Iverson, Brian J. Smith

Wildland Resources Student Research

Identification of high-use foraging sites where imperiled sea turtles are resident remains a globally-recognized conservation priority. In the biodiverse Gulf of Mexico (GoM), recent telemetry studies highlighted post-nesting foraging sites for federally threatened loggerhead turtles (Caretta caretta). Our aim here was to discern loggerhead use of additional northern GoM regions that may serve as high-use foraging sites. Thus, we used satellite tracking and switching state-space modeling to show that the Big Bend region off the northwest Florida coast is a coastal foraging area that supports imperiled adult female loggerhead turtles tracked from different nesting subpopulations. From 2011 to …

Life Of Tau: Oligomerization, Cns Extracellular Clearance And Role As Plasma Biomarker, Tirth Patel

Arts & Sciences Graduate Student Theses and Dissertations

The microtubule associated protein tau (MAPT, commonly referred to as tau) is an intrinsically disordered, highly soluble protein predominantly expressed in axons where it binds and stabilizes microtubules. Under normal physiological conditions, soluble monomeric tau is released in the extracellular space in the interstitial fluid (ISF) by neurons. Additionally it undergoes reversible phosphorylation and other extensive modifications inside the cell under the action of a host of enzymes. However in the disease process tau loses this solubility, detaches from microtubules and ultimately migrates to the somatodendritic compartment of the neuron, where it ultimately forms insoluble fibrillar aggregates known as tau …

Hawaii As A Microcosm: Advancing The Science And Practice Of Managing Introduced And Invasive Species, Liba Pejchar, Christopher A. Lepczyk, Jean E. Fantle-Lepczyk, Steven C. Hess, M. Tracy Johnson, Christina R. Leopold, Michael Marchetti, Katherine M. Mcclure, Aaron B. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive species are a leading driver of global change, with consequences for biodiversity and society. Because of extraordinary rates of endemism, introduction, and extinction, Hawaii offers a rich platform for exploring the cross-disciplinary challenges of managing invasive species in a dynamic world. We highlight key successes and shortcomings to share lessons learned and inspire innovation and action in and beyond the archipelago. We then discuss thematic challenges and opportunities of broad relevance to invaded ecosystems and human communities. Important research needs and possible actions include eradicating mammals from mainland island sanctuaries, assessing hidden threats from poorly known introduced species, harnessing …

Phylogeny And Floral Character Evolution Of Mentzelia Section Bicuspidaria (Loasaceae), Joshua M. Brokaw, John J. Schenk, Jessica K. Devitt, Destiny J. Brokaw

Biology

Mentzelia section Bicuspidaria (Loasaceae) is a monophyletic group of desert ephemerals that inhabit the complex, heterogeneous landscapes of the southwestern United States and northwestern Mexico. To investigate species circumscriptions and evolutionary relationships in M. sect. Bicuspidaria, we employed phylogeny reconstructions based on DNA sequences from the plastid trnL-trnF, trnS-trnfM, ndhF-rpl32, and rpl32-trnL regions and the nuclear ribosomal ITS and ETS regions. Due to evidence of discordant relationships reconstructed from the plastid and nuclear partitions, we used coalescent-based methods in addition to concatenated data sets to estimate the species tree. Maximum likelihood reconstructions based on the combined …

Comparing Water Use Forecasting Model Selection Criteria: The Case Of Commercial, Institutional, And Industrial Sector In Southern California, Dilek Uz, Steven Buck

Agricultural Economics Faculty Publications

The United States is one of the largest per capita water withdrawers in the world, and certain parts of it, especially the western region, have long experienced water scarcity. Historically, the U.S. relied on large water infrastructure investments and planning to solve its water scarcity problems. These large-scale investments as well as water planning activities rely on water forecast studies conducted by water managing agencies. These forecasts, while key to the sustainable management of water, are usually done using historical growth extrapolation, conventional econometric approaches, or legacy software packages and often do not utilize methods common in the field of …

The Pantropical Response Of Soil Moisture To El Niño, Kurt C. Solander, Brent D. Newman, Alessandro Carloca De Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Celleri, Jeffery Q. Chambers, Bradley O. Christoffersen

School of Earth, Environmental, & Marine Sciences Faculty Publications

The 2015–2016 El Niño event ranks as one of the most severe on record in terms of the magnitude and extent of sea surface temperature (SST) anomalies generated in the tropical Pacific Ocean. Corresponding global impacts on the climate were expected to rival, or even surpass, those of the 1997–1998 severe El Niño event, which had SST anomalies that were similar in size. However, the 2015–2016 event failed to meet expectations for hydrologic change in many areas, including those expected to receive well above normal precipitation. To better understand how climate anomalies during an El Niño event impact soil moisture, …

Pandemic Forum Syllabus, Lynda Coon

Pandemic Course

This forum tackles the recent global outbreak of the COVID-19 Coronavirus. University of Arkansas faculty, doctors from Washington Regional Medical Center and Arkansas state leaders confront the virus from a variety of angles —medical sciences, supply chain, public health, social media, mathematics, economics, history, religion, art, and environmental studies. In so doing, the forum’s instructors situate COVID-19 within a broader narrative of the history of pandemics as well as the multivalent factors contributing to virulent flu eruptions across an international stage.

Taking A Closer Look On The Coronavirus, Alisha Barday, Janina Duran, Lisa Agranov

Publications and Research

No abstract provided.

Influences Of Anti-Bd Bacteria On Amphibians And Their Microbiomes, Emme L. Schmidt

Honors Thesis

The fungal pathogen Batrochochytrium dendrobatidis (Bd) has been threatening amphibian populations across the globe. Recent work has discovered that bacteria isolated from certain populations of amphibians protect hosts from this pathogen. This project focuses on the anti-fungal mechanisms of Serratia marcescens, a species of bacteria isolated from a Costa Rican frog that dramatically inhibited Bd in culture. Wild-type and recombinant S. marcescens was introduced to the microbiomes of a live amphibian host, Acris blanchardi (Blanchard’s Cricket Frog) and then challenged with Bd to examine the protective effects of this bacteria. The experiment includes recombinant S. marcescens with …

Baseline Health Assessment Of A Rural Delta Community, Sydney Mitchell

Honors Theses

The Lower Mississippi Delta is characterized by poverty, chronic health issues, health disparities, and food insecurity. The rural Delta communities are primarily African American, experiencing disproportionately higher rates of poverty, job loss, and chronic health problems. Historically, chronic health issues have persisted in these areas over time, including obesity, hypertension, and diabetes, which have only seemed to increase in this region. The food environment in this rural region tends to assist in the creation of the largely obesogenic population which, in turn, contributes to the increased prevalence of diabetes and hypertension and a lower quality of life. Many residents in …

Population Genetics Of A Recent Range Expansion By The Southern Pine Beetle, Dendroctonus Frontalis, Into The Northeastern United States, Megan Stubbs

Honors Theses

Population genetics as a field of study aims to determine the genetic variation among individuals in a population, and differences among populations. Certain population genetic analyses can provide such information and be used to better understand the biological aspects to a species’ expansion beyond its native range. The southern pine beetle (SPB), Dendroctonus frontalis, has become an invasive pest to pine forests in northeastern United States with its recent range expansion. Nine microsatellite loci were first developed and then used in analyses. To determine what the genetic variation is among individuals in SPB populations across its entire range, including …

Public Perspectives And Media Reporting Of Wolf Reintroduction In Colorado, Rebecca Niemiec, Richard E.W. Berl, Mireille Gonzalez, Tara Teel, Cassiopeia Camara, Matthew Collins, Jonathan Salerno, Kevin Crooks, Courtney Schultz, Stewart Breck, Dana Hoag

United States Department of Agriculture Wildlife Services: Staff Publications

In the state of Colorado, a citizen ballot initiative to reintroduce gray wolves (Canis lupus) is eliciting polarization and conflict among multiple stakeholder and interest groups. Given this complex social landscape, we examined the social context surrounding wolf reintroduction in Colorado as of 2019. We used an online survey of 734 Coloradans representative in terms of age and gender, and we sampled from different regions across the state, to examine public beliefs and attitudes related to wolf reintroduction and various wolf management options. We also conducted a content analysis of media coverage on potential wolf reintroduction in 10 major daily …

Diversity Of Navel Microbiome In Young Adults, Shreya Shah, Teresa Donze-Reiner, Vishal Shah

Biology Faculty Publications

Introduction. Human skin microbial communities represent a tremendous source of genetic diversity that evolves as a function of human age. Microbiota differs between regions of oily and moist skin, and appears to stabilize with age.

Aim. We have a minimal understanding of the time frame required for the stabilization of skin microbiota, and the role played by gender. In the current study, we examined the microbiota present in the navel region of college-attending young adults in the age group of 18–25 years and investigated if diversity is associated with gender (male and female).

Method. The study involved 16 female and …

Sounding The Nile: River Politics, Environment And Nubian Musical Expression, Regan L. Homeyer

Music ETDs

ABSTRACT

In the mid 1960s, almost 100,000 Egyptian Nubians, people Indigenous to the Nile River Valley, were removed from their ancestral homeland due to the creation of the Aswan High Dam. In the years surrounding their displacement, Nubian musicians in Cairo and villages in new settlement areas gathered traditional Nubian songs and composed new songs to form a distinctive Nubian musical repertoire. This thesis addresses contemporary Nubian musical performance and the role of these reclaimed and newly-written songs in maintaining and revitalizing not only Nubian languages and culture, but especially senses of self in relation to place and, above all, …

Sylvan Dell Nature Preserve Project, Brian Quinn, Katie Wisotsky, Huthaifa Aladwan

Sylvan Dell Field Station Student Projects

The Sylvan Dell Nature Preserve and Farm in South Williamsport, PA. Sylvan Dell is a 229 acre plot of farmland that contains a wetland on the south section of the property. It lies just south of the West Branch of the Susquehanna River. The first humans we know of to settle on this land were the Susquehannock and later the Haudenosaunee (Iroquois) Native Americans. In the late 18th century, white settlers took the land away from the Haudenosaunee. In the 20th century, the famous ornithologist Robert Porter Allen was influenced by the broad range of bird species that would visit …

Ecological Analyses Of Macroinvertebrates And Fish Species In Six Streams On A Louisiana Military Base From 2001 To 2019, Danielle Joerger

Biology Theses

An in-depth ecological analysis of how and why the aquatic community changes over time was conducted for 6 streams on the Fort Polk military base in Louisiana using data collected from 2001 to 2019. Fort Polk is a unique location as nineteen first-order streams are located on the premises belonging to three separate drainages. The primary goal was to determine whether temporal or between-drainage variation has a larger effect on community structure. To accomplish this the effects of disturbance on fish and macroinvertebrate assemblages was determined temporally and between drainages. Several hypotheses were drawn from this: 1) temporally, assemblages exhibit …

A Social–Ecological Odyssey In Fisheries And Wildlife Management, Andrew K. Carlson, William W. Taylor, Melissa R. Cronin, Mitchell J. Eaton, Mark A. Kaemingk, Andrea J. Reid, Ashley Trudeau

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Aldo Leopold, famous ecologist and “father” of North American wildlife management, once said, “These are two things that interest me: the relation of people to each other, and the relation of people to land” (Leopold 1947). Ever prescient, Leopold recognized that natural resource management is fundamentally about humans and their relationship with nature well before conservation became an established way of thinking, much less the bedrock of entire professions. Similarly, amid the Green Revolution to increase agricultural production, in part, through widespread use of pesticides, renowned environmentalist and journalist Rachel Carson noted that we are all “a part of nature, …

A Floristic Survey Of Andalusia: A Historic Preservation Site In Baldwin County, Georgia, William Pharr

Biology Theses

A survey of the vascular plants of Andalusia, a historic preservation site located along Highway 441 north of Milledgeville in Baldwin County, Georgia, was conducted between August 2018 and February 2020. The site was the late home of esteemed author, Flannery O’Connor, and resides along the Georgia fall line, making it a historically significant area that could yield a unique plant community convergence, as well as rare endemic species. This floristic inventory provides baseline data on the species and plant communities of Andalusia for use in future studies regarding the flora of this area. A total of 191 vascular species …

Integrating National Ecological Observatory Network (Neon) Airborne Remote Sensing And In-Situ Data For Optimal Tree Species Classification, Victoria M. Scholl, Megan E. Cattau, Maxwell B. Joseph, Jennifer K. Balch

Human-Environment Systems Research Center Faculty Publications and Presentations

Accurately mapping tree species composition and diversity is a critical step towards spatially explicit and species-specific ecological understanding. The National Ecological Observatory Network (NEON) is a valuable source of open ecological data across the United States. Freely available NEON data include in-situ measurements of individual trees, including stem locations, species, and crown diameter, along with the NEON Airborne Observation Platform (AOP) airborne remote sensing imagery, including hyperspectral, multispectral, and light detection and ranging (LiDAR) data products. An important aspect of predicting species using remote sensing data is creating high-quality training sets for optimal classification purposes. Ultimately, manually creating training data …

Impact Of Cow Size And Validation Of An Electronic Feeder To Optimize Resources In Beef Production Systems, Robert L. Ziegler

Department of Animal Science: Dissertations, Theses, and Student Research

Optimizing beef production systems is critical in the longevity of an enterprise. In a time of rapid change and innovation, there are increasingly more opportunities to improve efficiency of livestock production by taking advantage of new technologies. Furthermore, production environments vary drastically in all segments of the beef industry, which influence feed resource availability. Therefore, it is critical to realize the cow type that excels in a given production environment according to management objectives. To gain a better understanding of the optimal cow type in the Nebraska Sandhills, a retrospective analysis was conducted to evaluate increasing cow body weight (BW) …

Something To Celebrate?: Demoting Dairy In Canada's National Food Guide, Maneesha Deckha

Journal of Food Law & Policy

In early 2019, the Canadian Government released the much-anticipated new Canada Food Guide. It is a food guide that de-emphasizes dairy products and promotes plant-based eating. Notably, in the new version, milk and milk products are de-listed as one of the previously four essential food groups. On the surface, it seems that the federal government is promoting veganism and helping to bring about a friendlier future for animals and humans harmed by being producers and consumers of dairy, as the new Guide may seriously contract the currently robust Canadian dairy industry and its powerful lobby. On closer inspection, the messaging …

In Situ Plant Uptake Of Excess Nutrients And Consequential Alteration Of Rhizosphere Dynamics, Srusti Maddala

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

The use of phytoremediation in ecological remediation projects has numerous benefits including soil stabilization and nutrient uptake. Recently, microdialysis, a diffusion-based sampling technique commonly used in biomedical research, has been recognized as a candidate for monitoring chemical changes in the rhizosphere. The real-time, in situ data it provides about nutrient diffusion may improve the management and success of restoration projects. Therefore, the objective of this study was to employ the technique of microdialysis in the novel application of quantifying the diffusive flux of inorganic nitrogen compounds in the rhizosphere of native plants of Arkansas. The microdialysis technique was first optimized …

Pilot Testing A Qualitative Methodology To Evaluate The Perceived Benefits And Stressors Of Sole-Dog Ownership In Full-Time College Students, Emma Williams

Animal Science Undergraduate Honors Theses

The number of individuals acquiring pets is continually increasing, with 71.5% of Americans owning a pet in 2012. Companion animals are a huge source of benefits but owning them can also come with several stressors. However, little research has been conducted on the negative aspects of dog ownership. This pilot test evaluates the perceived stressors and benefits of sole dog ownership in full-time college students. The pilot aimed to hold three focus groups from which qualitative thematic data were collected and quantitative were collected from a demographic survey of participants. Participants were asked a series of questions about sole dog …

College Of Natural Sciences Newsletter, May 2020, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 1. Issue 4

In this issue:

Dean’s Update P.1
Awards & Recognition P.2
Club Spotlight | Academic Tips P.3
Interest in Science | Face Masks P.4
Research Spotlight | Welcome P.4
Meet the Pets of CNS P.5

Buffalograss Diversity Assessment, Jesse Collin Marshall

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Buffalograss [Buchloë dactylodes (Nutt.) Engelm. syn. Bouteloua dactyloides (Nutt.) Columbus] is a low input alternative turfgrass for the Great Plains region. Buffalograss is a dioecious stoloniferous warm season grass with wide variation of valuable traits and is well adapted for use in minimal maintenance landscapes. The obligate outcrossing nature of the species and wide variation of potentially valuable traits make buffalograss a prime candidate for cultivar improvement and genetic study. Limited information is available regarding buffalograss genetics. In effort to expand genetic resources around buffalograss, we developed buffalograss derived simple sequence repeat markers from previously available transcriptomes of buffalograss …

Food Safety Risk In An Indoor Microgreen Cultivation System, Gina Marie Misra

Graduate Theses and Dissertations

Microgreens are immature sprouts of edible plants, sharing some similarities with sprouted seeds and petite leafy greens. Since they are most often grown in containers in buildings or greenhouses, they present a new area for food safety research at the intersection of the built environment and produce farming. Contamination by human pathogens has been extensively studied in other types of produce typically eaten raw, including sprouted seeds, which have been implicated in numerous outbreaks of salmonellosis over the last several decades. There is a paucity of knowledge about the microgreen sector of the fresh-cut industry; thus, it was determined that …

Examining Various Aspects Of Zika Virus Dissemination In Aedes Aegypti, Ileana C. Lozano

Theses and Dissertations

South Texas is one of the few locations where Zika virus has been locally transmitted in the U.S. It has a climate which is distinct to other areas with autochthonous transmission, with extremely hot, dry summers and moderate winter temperatures. Studying mosquito transmission of Zika in a range of temperatures conditions replicating where virus transmission is occurring is essential in order to have a better understanding of transmission patterns. These factors were examined by infecting mosquitoes and monitoring the dissemination status through real-time PCR analysis.

To further characterize dissemination of Zika virus within south Texas mosquitoes a time series immunohistochemical …

A Tale Of Two Species: Black-Tailed And White-Tailed Prairie Dog Biogeography From The Last Interglacial To 2070, April Dawn Bledsoe

Electronic Theses and Dissertations

Ecological niche models (ENMs) were created for White-tailed and Black-tailed prairie dogs and projected into the Last Interglacial (LI), the Last Glacial Maximum (LGM), and mid-Holocene (mid-H) to discern possible past suitable habitat for both species. Additionally, ENMs were projected into the future year 2070 representative concentration pathways (RCPs) 2.6 and 8.5 to discern how climate change may affect future habitat suitability. Kernel density estimations, minimum convex polygons, and median distribution centers of White-tailed and Black-tailed occurrence records were examined between time-periods to discern the effects of anthropogenic westward expansion on both species’ distributions. Current ENMs were constructed from commonly …