Digital Commons Network^™

Predictors Of Marine Genetic Structure In The Indo-Australian Archipelago, Udhi E. Hernawan, Paul S. Lavery, Gary A. Kendrick, Kor-Jent Van Dijk, Yaya I. Ulumuddin, Teddy Triandiza, Kathryn M. Mcmahon

Research outputs 2014 to 2021

The spatial genetic structure of marine organisms is related to dispersal and life-history traits, historical processes, current oceanographic connectivity and habitat features. Here, we assessed the relative importance of these factors for the genetic structure of a broad range of marine species in the Indo Australian Archipelago (IAA). We collated published data on 99 marine species from eight taxonomic groups (ascidians, fishes, molluscs, crustaceans, echinoderms, corals, reptiles, and marine plants) and used generalized linear models (GLMs) to estimate the best predictors of genetic structure. Genetic structure was characterized by FST and the number of genetic clusters over the study area. …

Vulnerability Of Street Trees In Upper Midwest Cities To Climate Change, Leslie A. Brandt, Gary R. Johnson, Eric A. North, Jack Faje, Annamarie Rutledge

Michigan Tech Publications, Part 1

Urban trees play an important role in helping cities adapt to climate change, but also are vulnerable to changes in climate themselves. We developed an approach for assessing vulnerability of urban tree species and cultivars commonly planted in cities in the United States Upper Midwest to current and projected climate change through the end of the 21st century. One hundred seventy-eight tree species were evaluated for their adaptive capacity to a suite of current and future-projected climate and urban stressors using a weighted scoring system based on an extensive literature review. These scores were then evaluated and adjusted by leading …

Climate Change And Utah Ski Resorts: Impacts, Perceptions, And Adaptation Strategies, Emily J. Wilkins, Hadia Akbar, Tara C. Saley, Rachel Hager, Colten M. Elkin, Patrick Belmont, Courtney G. Flint, Jordan W. Smith

Watershed Sciences Faculty Publications

Climate change is a threat to ski resorts, the ski industry, and mountain communities that rely on ski tourism. Ski resorts may be able to mitigate some of the social and economic impacts caused by climate change with proactive adaptation strategies. Using historical weather data, future climate projections, and interviews with ski resort managers in Utah (United States), this research investigates the effects of climate change on ski resorts across the state. We examine temperature change at all resorts within the state from 1980–2018 and climate projections from 2021–2100 under different climate change scenarios (RCPs 2.6, 4.5, and 8.5). We …

Global, Regional, And National Sex Differences In The Global Burden Of Tuberculosis By Hiv Status, 1990-2019: Results From The Global Burden Of Disease Study 2019, Jorge R. Ledesma, Hmwe Hmwe Kyu, Arianna Maever L. Amit, Veincent Christian F. Pepito, Gbd 2019 Tuberculosis Collaborators, 328 Co-Authors

Ateneo School of Medicine and Public Health Publications

Background

Tuberculosis is a major contributor to the global burden of disease, causing more than a million deaths annually. Given an emphasis on equity in access to diagnosis and treatment of tuberculosis in global health targets, evaluations of differences in tuberculosis burden by sex are crucial. We aimed to assess the levels and trends of the global burden of tuberculosis, with an emphasis on investigating differences in sex by HIV status for 204 countries and territories from 1990 to 2019.

Methods

We used a Bayesian hierarchical Cause of Death Ensemble model (CODEm) platform to analyse 21 505 site-years of vital …

A Machine Learning Interpretation Of The Contribution Of Foliar Fungicides To Soybean Yield In The North‐Central United States, Denis A. Shah, Thomas R. Butts, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Shawn P. Conley, Paul D. Esker

Department of Agronomy and Horticulture: Faculty Publications

Foliar fungicide usage in soybeans in the north-central United States increased steadily over the past two decades. An agronomically-interpretable machine learning framework was used to understand the importance of foliar fungicides relative to other factors associated with realized soybean yields, as reported by growers surveyed from 2014 to 2016. A database of 2738 spatially referenced fields (of which 30% had been sprayed with foliar fungicides) was fit to a random forest model explaining soybean yield. Latitude (a proxy for unmeasured agronomic factors) and sowing date were the two most important factors associated with yield. Foliar fungicides ranked 7th out of …

Novel Pilot Development Of A Closed-Loop Sustainable System Between Biogas Renewable Energy, Distilling, And Aquaculture By Vermiculture Of Stillage Wastes, Samuel C. Kessler

The Cardinal Edge

This study provides a mixed-methods approach in analyzing a potential closed-loop system between renewable biogas production from anaerobic digestion, vermiculture production, aquaculture production, and organic wastes with a particular focus on stillage wastes. Such system may hold significant promise for significantly reducing organic carbon and methane emissions from its components, and should be assessed for such. The 2021 IPCC report essentially identified methane reduction as the single fastest way to slow global warming (IPCC, 2021), making the study and implementation of methane-reducing systems and supportive policy for them critical. Knowledge gaps to implementing this system were qualitatively identified as disconnect …

Stable Isotopes Used To Infer Trophic Position Of Green Turtles (Chelonia Mydas) From Dry Tortugas National Park, Gulf Of Mexico, United States, David C. Roche, Michael S. Cherkiss, Brian J. Smith, Derek A. Burkholder, Kristen M. Hart

Marine & Environmental Sciences Faculty Articles

Evaluating resource use patterns for imperiled species is critical for understanding what supports their populations. Here we established stable isotope (δ¹³C, δ¹⁵N) values for the endangered green sea turtle (Chelonia mydas) population found within the boundaries of Dry Tortugas National Park (DRTO), south Florida, USA. There is little gene flow between turtles sampled at DRTO and in other rookeries in Florida, underscoring the need to study this distinct population. Between 2008 and 2015 we collected multiple sample types (skin [homogenized epidermis/dermis], whole blood, red blood cells, plasma, carapace) from 151 unique green turtles, including …

The Future Of Zoonotic Risk Prediction, Colin J. Carlson, Maxwell J. Farrell, Zoe Grange, Barbara A. Han, Nardus Mollentze, Alexandra L. Phelan, Angela L. Rasmussen, Gregory F. Albery, Bernard Bett, David M. Brett-Major, Lily E. Cohen, Tad Dallas, Evan A. Eskew, Anna C. Fagre, Kristian M. Forbes, Rory Gibb, Sam Halabi, Charlotte C. Hammer, Rebecca Katz, Jason Kindrachuk, Renata L. Muylaert, Felicia B. Nutter, Joseph Ogola, Kevin J. Olival, Michelle Rourke, Sadie J. Ryan, Noam Ross, Stephanie N. Seifert, Tarja Sironen, Claire J. Standley, Kishana Taylor, Marietjie Venter, Paul W. Webala

Faculty Publications

In the light of the urgency raised by the COVID-19 pandemic, global investment in wildlife virology is likely to increase, and new surveillance programmes will identify hundreds of novel viruses that might someday pose a threat to humans. To support the extensive task of laboratory characterization, scientists may increasingly rely on data-driven rubrics or machine learning models that learn from known zoonoses to identify which animal pathogens could someday pose a threat to global health. We synthesize the findings of an interdisciplinary workshop on zoonotic risk technologies to answer the following questions. What are the prerequisites, in terms of open …

Growth–Defense Trade-Offs Shape Population Genetic Composition In An Iconic Forest Tree Species, Olivia L. Cope, Ken Keefover-Ring, Eric L. Kruger, Richard L. Lindroth

Aspen Bibliography

All organisms experience fundamental conflicts between divergent metabolic processes. In plants, a pivotal conflict occurs between allocation to growth, which accelerates resource acquisition, and to defense, which protects existing tissue against herbivory. Trade-offs between growth and defense traits are not universally observed, and a central prediction of plant evolutionary ecology is that context-dependence of these trade-offs contributes to the maintenance of intraspecific variation in defense [Züst and Agrawal, Annu. Rev. Plant Biol., 68, 513–534 (2017)]. This prediction has rarely been tested, however, and the evolutionary consequences of growth–defense trade-offs in different environments are poorly understood, especially in long-lived species …

Session 1: Water Research: Impacting The Lives Of Kentuckians, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

• Investigation and Remediation of an Urban Karst Groundwater Gasoline Leak at Lost River Cave, Bowling Green, Kentucky
• Spatial and Seasonal Variation in Concentrations of Disinfection Byproducts in the Public Drinking Water System of Martin County, Kentucky
• Farmer to Farmer: Virtual Shop Talks
• Solutions Begin with Understanding: Off-the-Grid Communities and Contaminated Karst Groundwater in Southcentral Kentucky*

Proceedings Of 2021 Kentucky Water Resources Annual Symposium, Kentucky Water Resources Research Institute, University Of Kentucky

Kentucky Water Resources Annual Symposium

This symposium was planned and conducted as a part of the state water resources research institute annual program that is supported by Grant/Cooperative Agreement Number G20AS00025 from the United States Geological Survey (USGS). The contents of this proceedings document and the views and conclusions presented at the symposium are solely the responsibility of the individual authors and presenters and do not represent the official views of the USGS or of the symposium organizers and sponsors. This publication is produced with the understanding that the United States Government is authorized to reproduce and distribute reprints for government purposes. Mention of trade …

Kelp Morphology And Herbivory Are Maintained Across Latitude Despite Geographic Shift In Kelp-Wounding Herbivores, Nicholas P. Burnett, Eric J. Armstrong, Rosemary Romero, Charlotte C. Runzel, Richelle L. Tanner

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Herbivores can drastically alter the morphology of macroalgae by directly consuming tissue and by inflicting structural wounds. Wounds can result in large amounts of tissue breaking away from macroalgae, amplifying the damage initially caused by herbivores. Herbivores that commonly wound macroalgae often occur over only a portion of a macroalga’s lifespan or geographic range. However, we know little about the influence of these periodic or regional occurrences of herbivores on the large-scale seasonal and geographical patterns of macroalgal morphology. We used the intertidal kelp Egregia menziesii to investigate how the kelp’s morphology and the prevalence of two prominent kelp-wounding herbivores …

Blue Carbon In South Florida's Mangroves: The Role Of Large Roots And Necromass, Zoë I. Shribman

LSU Master's Theses

Blue carbon sequestration and storage in mangroves largely result from belowground biomass allocation in response to flooded anaerobic soil conditions and nutrient availability. Biomass allocation to belowground roots is a major driver of mangrove soil formation and organic matter accumulation leading to blue carbon storage potential. Belowground biomass sampling in mangroves is labor intensive, limiting data availability on biomass stocks, particularly for large roots (>20 mm diameter) and necromass (dead roots). The mangrove nutrient model (NUMAN) uses mostly literature values to parameterize a soil cohort approach to simulate depth distribution of root mass and organic carbon concentration. We evaluated …

Competitive Advantage Of Geosmithia Morbida In Low-Moisture Wood May Explain Historical Outbreaks Of Thousand Cankers Disease And Predict The Future Fate Of Juglans Nigra Within Its Native Range, Geoffrey M. Williams, Matthew D. Ginzel

Purdue University Libraries Open Access Publishing Fund

Bark beetles vector symbiotic fungi and the success of these mutualisms may be limited by competition from other microbes. The outcome of fungal competition is strongly influenced by the physical and chemical conditions of the wood they inhabit. These conditions are in turn subject to climatic variation. In particular, wood moisture content (MC) influences fungal competition and, therefore, could help determine environmental suitability for thousand cankers disease (TCD) caused by Geosmithia morbida and its vector Pityophthorus juglandis. We conducted competition experiments in Juglans nigra wood that was naturally or artificially colonized by G. morbida and other fungi over a range …

Farmers’ Adoption And Perceived Benefits Of Diversified Crop Rotations In The Margins Of U.S. Corn Belt, Tong Wang, Jin Hailong, Yubing Fan, Oladipo Obembe, Dapeng Li

Economics Faculty Publications

Monoculture and simplified two-crop rotation systems compromise the ecosystem services essential to crop production, diminish agricultural productivity, and cause detrimental effects on the environment. In contrast to the simplified two-crop rotation, diversified crop rotation (DCR) refers to rotation systems that contain three or more crops. Despite multiple benefits generated by DCR, its usage has dwindled over the past several decades. This paper examined determinants of farmers' adoption decisions and perceived benefits of DCR in the west margins of the U.S. Corn Belt where crop diversity has declined. We analyzed 708 farmer responses from a farmer survey conducted in the eastern …

College Of Natural Sciences Newsletter, September 2021, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 2, Issue 9.

Page 1 Dean's Message
Page 2 Awards and Recognition
Page 3 Student Clubs in Natural Science
Page 4 Media Coverage of CNS
Page 5 Hobo Day Festivities
Page 6 Open PRAIRIE Data; Grants Awarded in CNS
Page 7 One Day for State Recap

Surveillance Of Wisconsin Organisms For Trends In Antimicrobial Resistance And Epidemiology (Swotare): 2018-2019 Report On Enterobacter Cloacae And Klebsiella Pneumoniae Clinical Isolates, Alyssa Reynoso, Erik Munson

Clinical Lab Sciences Faculty Research and Publications

Objectives: Both Enterobacter cloacae and Klebsiella pneumoniae have been regarded as important opportunistic pathogens for humans. Recent data have described the spread of multi-resistant strains of these organisms. Development of novel resistance phenotypes may result in a reduction in anti-infective efficacy, therefore making patient treatment decisions challenging. The Surveillance of Wisconsin Organisms for Trends in Antimicrobial Resistance and Epidemiology (SWOTARE) program aims to combat this issue and improve antibiotic stewardship by monitoring antimicrobial resistance at a local level.

Design: Multi-center laboratory surveillance, with testing at a single location utilizing standardized media and susceptibility testing protocols

Methods: In the years 2018 …

Vertebrate Scavenger Diversity And Ecosystem Services Along An Elevational Gradient In Central Nepal, Aishwarya Bhattacharjee

Dissertations, Theses, and Capstone Projects

A growing number of studies recognize the ecological significance of vertebrate scavengers, and several species belonging to this diverse, functional guild are of high conservation importance around the globe. Studies on taxonomic and functional components of biodiversity often use elevation gradients to comprehensively examine patterns and drivers across multiple spatial scales. Yet, there are relatively few elevational studies on large vertebrates or multi-taxa guilds, and the related variation of their ecosystem services. In particular, scavenger research has largely focused on local-scale studies or regional/global comparisons of local-scale investigations. Moreover, these studies primarily consider taxonomic community characteristics and the patterns of …

Domesticating The Exotic? An Online Survey Of Attitudes Towards The International Wildlife Pet Trade, Andrea Contina, Christopher E. Anderson, David C. Hille, William F. Oakley, Eli S. Bridge, Jeffrey F. Kelly, Haley O. Smith, Jennifer Koch, Lori L. Jervis

School of Integrative Biological & Chemical Sciences Faculty Publications

There are a variety of perspectives on wildlife management and conservation, necessitating interdisciplinary research to develop better management strategies. We answered the call to action provided by Teel et al. (2018) to integrate social sciences into conservation and explored an important but understudied issue: views on the international pet-trade of exotic animals. Some pet owners advocate the pet trade as a means to promote conservation, where removing wild animals from their natural habitat could protect them from degraded environments. To gauge how prevalent this attitude is in a cross-national sample, we conducted an online survey that asked 882 participants worldwide …

Does Dicamba Exposure Elicit A Hormetic Response In Sensitive Soybean?, Mason Castner, Jason K. Norsworthy, L. Tom Barber, Edward Gbur, Trenton Roberts

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Applications of dicambaherbicide to dicamba-resistant (DR) soybean [Glycine max (L.) Merr.] and cotton (Gossypium hirsutum L.) may increase the risks of non-DR soybean exposure to dicamba. Dicamba residue in sprayers poses a challenge for applicators that also treat non-DR soybean. Risks for non-DR soybean producers increase as the planted acreage and usage of DR crops increases, as there is potential for volatilization of the herbicide in the summer months, posing a risk for nearby non-DR soybean producers. There has been widespread speculation that a low-dose exposure of dicamba to sensitive soybean may elicit a positive response in yield …

Biosecurity Council Of Western Australia Annual Report 2020/2021, Biosecurity Council Of Western Australia

Biosecurity published reports

Understanding the needs and challenges of industry, community and government is key to ensuring relevant and constructive advice to government. During 2020/21, the Council continued to monitor biosecurity-related developments at national and State levels and proactively engaged with industry, community and government on biosecurity matters. The key areas of advice that were progressed during the year were:

• mechanisms for funding biosecurity in WA
• the effectiveness of WA’s border biosecurity system
• how Western Australians perceive ‘biosecurity’ and their role in pest, weed and disease prevention, surveillance and response; and
• the quadruple bottom line of biosecurity.

Constructing An Imaginary Wall In The Ocean: A Technical Cartography Study On The Delimitation Of Maritime Boundaries In The Provinces Of South Sumatra And Bangka Belitung Islands Based On Gis, Kurniawan Agung, Khakhim Nurul, Slamet Hardjo Karen, Iwan Santoso Agus, Setiyo Pranowo Widodo

ASEAN Journal on Science and Technology for Development

Marine management areas in Indonesia can be claimed 12 nautical miles from the coastline by regional governments, according to Law 23 of 2014. However, in reality, there are many provinces whose distances to other provinces are fewer than 2 × 12 nautical miles, necessitating that they be delimited fairly and proportionally. The provinces of South Sumatra and Bangka Belitung Islands are such an example. The absence of clear boundaries drawn on the national map of Indonesia was the fundamental problem and focus of this study, owing to the need for delimitation of regional sea boundaries. The delimitation method used to …

High-Throughput Phenotyping Of Rice Grains Subjected To High Nighttime Temperature Stress, Shannon Shareice Cunningham

Student Theses and Dissertations

Rice grain size is affected by high nighttime temperature stress (HNT). Although studied in small subsets, the Rice Diversity Panel 1 has not been extensively studied to determine HNT effects on grain size. Accessions have been identified as tolerant and sensitive to HNT under greenhouse conditions (Dhatt et al., 2020). A high throughput phenotyping (HTPP) method and a PlantCV2 workflow were implemented in this work to determine grain dimensions. Seed area was found to be a good indicator of HNT tolerance with a coefficient of variation being 15%. Among tolerant accessions, seed area increased by an average of 1.57 mm2 …

Observations Of Post-Wildfire Landcover Trends In Boreal Alaska Using A Suite Of Remote Sensing Approaches, Eric John Deutsch

Theses - ALL

Wildfires are a common occurrence in the boreal ecosystems of the Pacific Northwest. Studies suggest that anthropogenic climate change has fostered more frequent and higher severity fires in recent decades in these forests, which may result in substantial changes in vegetation structure and ecosystem functioning. However, large-scale studies examining the linkages between changing boreal wildfire regimes and vegetation structure have historically been limited in spatial scope due to the broad area and inaccessibility of many boreal regions, including the Alaskan interior. The development and advancement of satellite remote sensing instruments and geospatial analysis techniques provide researchers with unmatched abilities to …

Representation Justice As A Research Agenda For Socio-Hydrology And Water Governance, Melissa Haeffner, Dana E. Hellman, Alida Cantor, Idowu Ajibade, Vinka Oyanedel-Craver, Maura Kelly, Laura Schifman, Lisa Weasel

Environmental Science and Management Faculty Publications and Presentations

We propose representation justice as a theoretical lens for socio-hydrology and water governance studies. An exploratory survey of 496 water sector employees in the United States revealed that self-identifying females felt more strongly discriminated against due to their gender and other social factors, compared to self-identifying males. Responses unveiled how macro- and microaggressions impede career pathways to leadership positions and, therefore, representation. We identify ways in which socio-hydrology can benefit from a representation justice lens by considering the following: (1) how power and politics shape the composition of the water sector and decision-making processes; (2) how available quantitative data do …

The Third Generation Of Pan-Canadian Wetland Map At 10 M Resolution Using Multisource Earth Observation Data On Cloud Computing Platform, Masoud Mahdianpari, Brian Brisco, Jean Granger, Fariba Mohammadimanesh, Bahram Salehi, Saeid Homayouni, Laura Bourgeau-Chavez

Michigan Tech Publications, Part 1

Development of the Canadian Wetland Inventory Map (CWIM) has thus far proceeded over two generations, reporting the extent and location of bog, fen, swamp, marsh, and water wetlands across the country with increasing accuracy. Each generation of this training inventory has improved the previous results by including additional reference wetland data and focusing on processing at the scale of ecozone, which represent ecologically distinct regions of Canada. The first and second generations attained relatively highly accurate results with an average approaching 86% though some overestimated wetland extents, particularly of the swamp class. The current research represents a third refinement of …

Population Structure In Two Imperiled Sparrows With Differing Vagility, Amie Elizabeth Settlecowski

LSU Doctoral Dissertations

Characterizing population structure and genetic differentiation can inform the management of imperiled species and the relative influences of ecological and evolutionary factors on species evolution. One trait that is expected to influence the amount of population structure a species exhibits is vagility, or the ability to move across the landscape. Species with higher vagility may be more likely to disperse, potentially facilitating gene flow among populations and limiting population structure. My dissertation focuses on characterizing population structure in 2 imperiled sparrows that are both largely nonmigratory with broad distributions in eastern North America: Seaside Sparrow (Ammospiza maritima) and Bachman’s Sparrow …

Effects Of Shoreline And Watershed Development On Eastern Lake Michigan Drowned River Mouth Ecology, Megan M. Mader, Carl R. Ruetz Iii

Masters Theses

Lake Michigan’s drowned river mouths (DRM) are hydrologically unique systems with riverine and large-lake influences that create biologically diverse ecosystems. Serving as focal points for human development due to the ecosystem services they provide, DRMs have experienced a history of industrialization, urbanization, and are now moving towards an era of rehabilitation. Today, DRM shorelines have been hardened, their riparian zones have been severely altered, and their watersheds exist on a latitudinal gradient of less to greater anthropogenic stress (agriculture and development). The main goal of this study was to understand the current ecological state of DRMs related to anthropogenic development …

Comparative Analysis For Herdsmen's Income Under The Different Background Systems, Jiri Xi

IGC Proceedings (1977-2023)

No abstract provided.

Farm Type And High Tunnel Management: Connections Between Farm Characteristics And High Tunnel Outcomes In Indiana, Analena B. Bruce, Elizabeth Maynard, Julia C.D. Valliant, James R. Farmer

Department of Horticulture & Landscape Architecture Faculty Publications

High tunnels are a low-cost technology that can strengthen local and regional food systems and have been shown to help farmers extend the growing season and increase the yield and shelf life, and improve the quality of their crops. This study addresses a need for a better understanding of farmers’ experience with integrating high tunnels into their operations, to understand the human dimensions of high tunnel management. We present an analysis of survey and interview data to examine how farm characteristics affect the outcomes of growing specialty crops in high tunnels. Our findings show that farmers managing different types of …