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Breathing Can Be Dangerous: Coccidioides And The Diverse Community Of The Lung Mycobiome, Paris S. Salazar-Hamm

Biology ETDs

Coccidioidomycosis, caused by soil-dwelling species of Coccidioides, is endemic to the Southwestern United States. It can present as a mild respiratory illness to life-threatening disseminated infections.Multi-gene phylogenetics and tracing patient histories revealed the presence of both Coccidioides species in New Mexico, and Native Americans may represent an unrecognized risk group. A PCR method developed distinguishes Coccidioides species by targeting regions of the mitochondrial genome. Recent advancements in molecular genetics solidifies lungs are not sterile. Illumina community data from 199 small mammals from Arizona, California, and New Mexico demonstrated a great diversity of fungi inhabiting lung tissues. One dominant order, Onygenales, …

Modeling Environmental Factors Related To Drought-Induced Tree Mortality Based On Lidar And Hyperspectral Imagery, Lauren Nicole Sharwood

Dissertations and Theses

Climate change is projected to bring more frequent and prolonged droughts, causing widespread forest die-off. Identifying tree mortality over large spatial extents in response to the most recent California drought will help forest managers and conservationists understand where there may be a greater likelihood of future die-offs. In order to find more at-risk areas, this study evaluated how interacting site-specific topographic, climate, substrate, and stand characteristics mediated tree mortality in the Central Sierra Nevada during the 2012-2016 drought. The author used lidar and hyperspectral imagery provided by the National Ecological Observatory Network to identify individual dead trees using the Random …

Sampling Bias Exaggerates A Textbook Example Of A Trophic Cascade, Elaine M. Brice, Eric J. Larsen, Daniel R. Macnulty

Aspen Bibliography

Understanding trophic cascades in terrestrial wildlife communities is a major challenge because these systems are difficult to sample properly. We show how a tradition of non-random sampling has confounded this understanding in a textbook system (Yellowstone National Park) where carnivore [Canis lupus (wolf)] recovery is associated with a trophic cascade involving changes in herbivore [Cervus canadensis (elk)] behaviour and density that promote plant regeneration. Long-term data indicate a practice of sampling only the tallest young plants overestimated regeneration of overstory aspen (Populus tremuloides) by a factor of 4–7 compared to random sampling because it favoured plants taller than the preferred …

Genetic Resources For Temperate Areas - Achievements And Perspectives, Mónica Rebuffo, T. Abadie

IGC Proceedings (1977-2023)

The processes of natural evolution and domestication of temperate forage genetic resources resulted in a build-up of genetic diversity, being remarkable in natural populations of grasses and legumes from Central Europe and the Mediterranean basin. Worldwide utilization of few species caused further increment in intraspecific genetic differentiation, meanwhile landraces became adapted to local agricultural production systems. Highlights are given to the risk of genetic erosion of indigenous grasslands as a consequence of the ecosystem modifications imposed by agriculture, as well as the drastic reduction of intraspecific genetic diversity caused by the process of plant breeding and environmental leveling in modern …

Differences By School Location In Summer And School Monthly Weight Change: Findings From A Nationally Representative Sample, Ethan T. Hunt, Bridget Armstrong Ph.D., Gabrielle Turner-Mcgrievy Ph.D., Rd, Michael Beets Med, Mph, Phd, Robert Weaver Med, Phd

Faculty Publications

Objectives: To examine changes in accelerations of Body Mass Index (BMI), age-and-sex specific body mass index (zBMI), and 95th percentile of BMI (%BMIp95) during the summer months and school year by school location designation (i.e., urban, suburban, exurban). This study utilized the Early Childhood Longitudinal Study Kindergarten Class of 2010-2011.

Methods: Of the 18,174 children in the ECLS-K:2011 dataset, I restricted participants to those with at least two consecutive measures that occurred August/September or April/May. Mixed-effect regression analyses estimated differences in monthly change in BMI, zBMI, and %BMIp95 between the summer and school year while accounting for the ECLS-K complex …

Machine Learning For Species Habitat Analysis, Abigail Lavallin

USF Tampa Graduate Theses and Dissertations

Management and conservation initiatives will always be controlled by finite resources, whether financialor temporal. Understanding a species’ spatial ecology, and how its requirements vary across habitats and locations is key to a successful species management plan. During recent decades, it has been noted how many species populations have declined, despite conservation practices working to increase their numbers. The most prevalent impacts affecting fauna populations have come from anthropogenic change in the form of habitat loss and destruction, along with fragmentation, and global climate change. There is a clear need for management practices to now operate on an entire landscape instead …

Casting A Critical Lens On Global Development: A Multimethod Investigation Of The Masculine Hegemonic Forces That Marginalize Women In Agriculture, Morgan Alyse Richardson Gilley

LSU Doctoral Dissertations

A critical link between gender equality and agricultural development has been established in the literature. However, disparities between genders have persisted in many areas of the developing world. One strategy that has been used to reduce gender inequalities has been educational outreach opportunities through agricultural extension, which has provided women a critical pathway to empowerment. Despite this, a lack of knowledge on the experiences of women in agriculture throughout Southeast Asia has served as a barrier to the advancement of such work. This investigation sought to better understand the issues facing this region’s fight to attain gender equality. To achieve …

College Of Natural Sciences Scholarship Brunch Program, November 6th 2021, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

This is the program for the first annual College of Natural Sciences Scholarship Brunch, held on November 6th, 2021 at McCrory Gardens.

College Of Natural Sciences Newsletter, November 2021, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 2, Issue 11

Page 1 Dean's Message
Page 2 Awards & Recognition
Page 3 Media Coverage of CNS
Page 4 2021 Day of Scholars
Page 5 Astronomy Outreach
Page 6 SDSU Faculty & Students Host American Society for Microbiology Annual Conference
Page 7 Scholarship Brunch
Page 8 Open PRAIRIE Data, SI Final Exam Review Sessions
Page 9 Aamlid Family Anatomy Lab Photos

Nutrient Cycling In Tropical And Temperate Coastal Waters: Is Latitude Making A Difference?, Christian Lønborg, Moritz Müller, Edward C. V. Butler, Shan Jiang, Seng Keat Ooi, Dieu Huong Trinh, Pui Yee Wong, Suryati M. Ali, Chun Cui, Wee Boon Siong, Erik S. Yando, Daniel A. Friess, Judith A. Rosentreter, Bradley D. Eyre, Patrick Martin

Biological Sciences Faculty Publications

Tropical coastal waters are highly dynamic and amongst the most biogeochemically active zones in the ocean. This review compares nitrogen (N) and phosphorus (P) cycles in temperate and tropical coastal waters. We review the literature to identify major similarities and differences between these two regions, specifically with regards to the impact of environmental factors (temperature, sunlight), riverine inputs, groundwater, lateral fluxes, atmospheric deposition, nitrogen fixation, organic nutrient cycling, primary production, respiration, sedimentary burial, denitrification and anammox. Overall, there are some similarities but also key differences in nutrient cycling, with differences relating mainly to temperature, sunlight, and precipitation amounts and patterns. …

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

Soil Hydrologic Grouping Guide Which Soil And Weather Properties Best Estimate Corn Nitrogen Need, Gregory Mac Bean, Curtis J. Ransom, Newell R. Kitchen, Peter C. Scharf, Kristen S. Veum, James J. Camberato, Richard B. Ferguson, Fabián G. Fernández, David W. Franzen, Carrie A.M. Laboski, Emerson D. Nafziger, John E. Sawyer, Robert L. Nielsen

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Nitrogen fertilizer recommendations in corn (Zea mays L.) that match the economically optimal nitrogen fertilizer rate (EONR) are imperative for profitability and minimizing environmental degradation. However, the amount of soil N available for the crop depends on soil and weather factors, making it difficult to know the EONR from year-to-year and from field-to-field. Our objective was to explore, within the framework of hydrologic soil groups and drainage classifications (HGDC), which site-specific soil and weather properties best estimated corn N needs (i.e., EONR) for two application timings (at-planting and side-dress). Included in this investigation was a validation step using an independent …

Livestock Ticks In The Uae: Prevalence, Distribution, Population Dynamics, And Associated Microorganisms, Nighat Perveen

Dissertations

Ticks are important vectors of an array of viral, bacterial, and protozoan pathogens resulting in a wide range of animal and human diseases in the Middle East and North Africa (MENA). In this study, ticks were collected from camels, cows, sheep, and goats in Abu Dhabi, Dubai, and Sharjah in the United Arab Emirates (UAE). The objectives of the study were to (1) identify tick species of livestock through taxonomic keys and using molecular markers, and determine their prevalence and distribution in the UAE, (2) assess Hyalomma dromedarii seasonal population fluctuation over a year under common camel breeding and management …

Pollinator Supplementation Mitigates Pollination Deficits In Smallholder Avocado (Persea Americana Mill.) Production Systems In Kenya, Rose Nyakemiso Sagwe, Marcell K. Peters, Thomas Dubois, Ingolf Steffan-Dewenter, H. Michael G. Lattorff

All Peer-Reviewed Publications

Avocado (Persea americana Mill.) is a major horticultural crop that relies on insect mediated pollination. In avocado production, a knowledge gap exists as to the importance of insect pollination, especially in East African smallholder farms. In this study, conducted in a leading smallholder avocado production region in Kenya, we assessed the dependence of avocado fruit set on insect pollination and whether current smallholder production systems suffer from a deficit in pollination services. Furthermore, we assessed if supplementation with colonies of the Western honey bee (Apis mellifera L.) to farms mitigated potential pollination deficits. Our results revealed a very high reliance …

Genome-Wide Snp Identification In Fraxinus Linking Genetic Characteristics To Tolerance Of Agrilus Planipennis, Cecelia E. Hale, Mark A. Jordan, Gloria Iriarte, Kirk Broders, Andrew J. Storer, Vamsi J. Nalam, Jordan M. Marshall

Michigan Tech Publications, Part 1

Ash (Fraxinus spp.) is one of the most widely distributed tree genera in North America. Populations of ash in the United States and Canada have been decimated by the introduced pest Agrilus planipennis (Coleoptera: Buprestidae; emerald ash borer), having negative impacts on both forest ecosystems and economic interests. The majority of trees succumb to attack by A. planipennis, but some trees have been found to be tolerant to infestation despite years of exposure. Restriction site-associated DNA (RAD) sequencing was used to sequence ash individuals, both tolerant and susceptible to A. planipennis attack, in order to identify single nucleotide polymorphism (SNP) …

Propagation Of A De Novo Gene Under Natural Selection: Antifreeze Glycoprotein Genes And Their Evolutionary History In Codfishes, Xuan Zhuang, C.-H. Christina Cheng

Biological Sciences Faculty Publications and Presentations

The de novo birth of functional genes from non-coding DNA as an important contributor to new gene formation is increasingly supported by evidence from diverse eukaryotic lineages. However, many uncertainties remain, including how the incipient de novo genes would continue to evolve and the molecular mechanisms underlying their evolutionary trajectory. Here we address these questions by investigating evolutionary history of the de novo antifreeze glycoprotein (AFGP) gene and gene family in gadid (codfish) lineages. We examined AFGP phenotype on a phylogenetic framework encompassing a broad sampling of gadids from freezing and non-freezing habitats. In three select species representing different AFGP-bearing …

Understanding Human Impacts On The Marine Environment In Fiji : Insights From An Odemm Conceptual Model And Semi-Structured Interviews, Alumita Talei Sekinairai

World Maritime University Dissertations

No abstract provided.

The Role Of Indigenous Knowledge In The Effective Collective Management Of The Communal Rangelands, A. Finca, S. Linnane, D. Getty, J. H. Slinger

IGC Proceedings (1977-2023)

Numerous scientific studies have highlighted the complexities associated with the collective management of communal rangelands. To date, policy interventions in rangelands have largely ignored people’s traditional ways of managing, with adverse effects on rangeland productivity. Thus, local knowledge has not been considered in spatial planning, despite the fact that local rural communities are often repositories of key indigenous knowledge. Hence this study set out to evaluate the role of indigenous knowledge in the management of the communal rangeland in Cata and Guquka, now and in the future. This was achieved through the use of Participatory GIS (PGIS), specifically participatory mapping …

Good For Baby, Good For Mom: The Determinants Of Breastfeeding Initiation And Continuation Among Working Women In The Midwest U.S., Qingyu Jiang, Holly Hatton-Bowers, Julie A. Tippens, Soo-Young Hong, Kara Kohel

Journal of Human Sciences and Extension

Various factors support or hinder women’s decision to initiate and continue breastfeeding, particularly among working women. Currently, limited literature investigates breastfeeding experiences among working women across time. The purpose of this study was to gain nuanced insight into working women’s breastfeeding experiences during the first year of their infant’s life. Semi-structured, in-depth interviews were conducted with working women residing in a Midwestern state (N = 25) across two time points (when infants were 3-4 months and 9-12 months). Results showed that twenty-one working women initiated and continued breastfeeding when their infants were 3-4 months old, and 14 women in the …

Proposals For Innovation And Improvement Of The Quality Of Life In Caprine Pastoralist Communities Of Subsistence In The Monte Desert, Argentina, E. M. Abraham, C. Rubio, D. Soria, L. Corso, A. Therburg, D. Bran, A. Maggi, P. Maccagno, C. Policastro, S. Verón, V. Pietragalla, M. Wilson

IGC Proceedings (1977-2023)

In a satisfactory alliance between the main environmental policy organizations and the academy, the National Observatory on Land Degradation and Desertification (ONDTyT) is created. The ONDTyD provides information regarding status and trends of land degradation/desertification in order to promote prevention and mitigation measures used for advising public and private decision-makers in Argentina. It is based in the development of 17 Pilot Sites that constitutes the local level network, providing bio-physical and socio-economic indicators of land degradation.

In this network the pilot site of the Monte, the largest dry region of Argentina (Lavalle desert, Mendoza), aims to improve the living conditions …

Participatory Management Of Rangeland Hydrology – A New Socio-Ecological Technology To Effectively Adapt To And Mitigate Climate Change: Case From Morocco, Lhoussaine Bouchaou, El Hassane El Mahdad, El Hassan Beraaouz, Abdelfettah Sifeddine, Alessandro Rizzo, Mohamed Hssaisoune, Hanane Reddad, Abdelghani Chehbouni, Elisabeth Huber-Sannwald

IGC Proceedings (1977-2023)

Morocco’s drylands cover over 90% of the land area; low and irregular rainfall and high potential evaporation contribute to extremely high-water deficits. These phenomena have greatly impacted rangeland hydrology and nomadic and transhumant pastoralism. To adapt to this predominant water deficit, the inhabitants of these areas have developed two forms of lifestyles, which include household and livestock mobility: (i) a pendulum movement for seasonal transhumance between the mountains and their bordering plains; and (ii) random nomadic mobility regulated by the sporadic frequency of rains and thus water availability. In both cases, this mobility is controlled by the degree of development …

Long-Term Socio-Ecological Research In The Biosphere Reserve In Mapimi, Mexico: A Multidimensional Participatory Observatory Of Rangeland/Pastoral Systems, V. M. Reyes Gómez, Elisabeth Huber-Sannwald, N. Martínez Tagüeña, I. Espejel Carvajal, S. Lucatello, M. A. Bowker, C. L. Lauterio Martínez

IGC Proceedings (1977-2023)

Since the creation of the UNESCO Biosphere Reserve Mapimi (BRM) in Mexico 45 years ago, pastoralism has undergone a series of transformations. Upon the arrival of the Spaniards, horse breeding flourished until 1900; thereafter extensive cattle production lasted for six decades. Only recently, farmers have adopted alternative management types for organic meat production. National and international efforts to achieve the Sustainable Development Goals (SDGs) require basic, applied, and participatory research efforts. In the socio-ecological pastoral system BRM, first halophytic ecosystems were examined for their ecohydrological role in rangeland productivity. In 1996, a long-term ecological research site was installed to monitor …

Wildlife Conservation And The Role Of The Indigenous Communities Living Around Conservation Areas, N. Parmisa, K. A. Galvin

IGC Proceedings (1977-2023)

The Indigenous Kenyan Maasai community has coexisted with the wildlife surrounding it for decades from Nairobi National Park, Maasai Mara and Amboseli. These parks border Maasai lands. Although the northern, eastern, and western perimeters of the Nairobi National Park are fenced, the southern part is not. It is at this point that the Maasai community’s land meets the park. This area also acts as a wildlife dispersal area where wildlife can freely migrate to other parks, including Maasai Mara and Amboseli. The park is only 117sq kms and its vitality depends on the plains to the south where the Maasai …

Producing Useful Knowledge For Sustainable Development, K. A. Galvin

IGC Proceedings (1977-2023)

Africa makes a relatively minor contribution to global greenhouse gas emissions compared with developed nations, yet the African continent will be increasingly vulnerable to climate change processes in the coming decades. Critical challenges include meeting basic needs for food, water, shelter, and other necessities without undermining biodiversity and ecosystem services. Coordination efforts to address multiple global change related stressors has generally occurred at the national level and taken an external approach, with national governments favoring collaboration with foreign-based NGOs and other international institutions. However, the involvement of actors at the local level correlates with decisions that are better adapted to …

Synthesis Of A Multimodal Ecological Model For Scalable, High-Resolution Arboviral Risk Prediction In Florida, Sean P. Beeman

USF Tampa Graduate Theses and Dissertations

West Nile virus (WNV) and Eastern Equine Encephalitis virus (EEEV) represent the two greatest endemic arboviral risks to the state of Florida. Currently, no approved human vaccine exists for the prevention of either virus. In the absence of a vaccine, effective disease surveillance is paramount for public health. In Florida, WNV and EEEV sentinel chicken surveillance is conducted by mosquito control programs operated at the county, municipality, or special taxing district level. This program was implemented in 1978 following human outbreaks of St. Louis Encephalitis virus (SLEV) that occurred between 1959 and 1977, with initial sentinel coops placed in proximity …

The Role Of Women In Rural Livestock: Which Women? Which Livestock?, Gabriela Litre, Daniela Nogueira, Alessandra Matte, Virginia Courdin

IGC Proceedings (1977-2023)

We explore the conceptual and empirical limitations of the question about “the role of women in rural livestock production” as well as the widespread assumption that women in livestock are subsistence or smallholder farmers. While this is correct in many situations, “essentialist” development discourses often disregard new demographic trends and the heterogeneity of live-stock production systems. Our research, which focuses on the livelihoods of women involved with livestock production in the Pampas’ grasslands of Brazil, proposes: 1) to critically analyse some of the most widely spread assumptions about women involved in beef livestock production, including the belief that women are …

Transdisciplinary Research In Practice: Lessons From Participatory, Folklore And Community-Supported Approaches In The Greater American West, H. Wilmer, L. Carr Childers, L. M. Porensky

IGC Proceedings (1977-2023)

Rapid social and ecological changes on global rangelands amplify the challenges to achieving biodiversity conservation, rural economic viability and social well-being, and rangeland sustainability. These dynamics create a need for transdisciplinary science that is inclusive of ecological, sociological, and participatory approaches in order to rebuild meaningful working relationships between scientists, ranchers and managers, and other rangeland stakeholders. In real application, however, transdisciplinary science faces numerous social, ethical, and logistical challenges, including the question of how the work might benefit rangeland stakeholders. Our objective is to advance rangeland researchers’ toolbox for meaningful engaged research by describing three lessons from transdisciplinary projects …

Towards A Holistic Understanding Of Pastoralism, M. Cabeza, P. Manzano, D. Burgas, L. Cadahía, J. Eronen, Á. Fernández-Llamazares, S. Bencherif, Ø. Holand, M. Fortelius, O. Seitsonen, María E. Fernández-Giménez, K. A. Galvin, N. Chr. Stenseth

IGC Proceedings (1977-2023)

Pastoralism is a globally-important livelihood, with large social, environmental and economic importance across much of our planet. Yet, it is also a vulnerable practice with widespread crises, urgently calling for better systemic understanding. The current disciplinary compartmentalization of research not only hampers this but allows perpetuation of unfortunate misconceptions. Furthermore, a long-standing marginalization of the livelihood prevails, with pastoralism being largely overlooked in international environmental and economic forums or sustainability agendas.

Here we call for transformative approaches to pastoralism research that can advance an integrated understanding of these social-ecological systems through a comparative lens. We develop a framework that uses: …

Rangelands And Pastoralism In Central Asia And Mongolia: Challenges And Perspectives, T. Ulambayar

IGC Proceedings (1977-2023)

Livestock herding contributes 10-45% of national GDPs across the Central Asia and Mongolia (CAM) region while supporting the livelihood of nearly one-third of the region’s population. Over 171 million herds graze the region's rangelands, occupying 65-73% of the territories in Central Asia (CA) and Mongolia. Traditional pastoralism has been affected dramatically by climate change. For the last decades, the annual mean air temperature has risen two to three times higher than the global average in CA and Mongolia respectively. Annual precipitation has a decreasing trend over the same period, causing increased aridity, a decline in lakes and rivers leading to …

User-Based Pasture Management In Kyrgyzstan: Achievements, Challenges, And Trends, Andrei Dörre, Ulan Kasymov

IGC Proceedings (1977-2023)

In Kyrgyzstan, a high mountain country in Central Asia, grasslands occupy almost half of the territory. These extensive resources represent the basis for seasonally mobile animal husbandry, which is relevant for both individual households and the national economy. With the dissolution of the Soviet Union and Kyrgyzstan’s transition into a market economy, these formerly state-owned grasslands were parceled out and privatized. Considerable socio-economic distortions and ecological problems occurred during this process. In order to meet such unintended effects, a legal framework for user-based pasture management was established in the course of an institutional learning process. This package of measures corresponded …