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The Pioneer Advantage: Filling The Blank Spots On The Map Of Genome Diversity In Europe, Taras K. Oleksyk, Walter Wolfsberger, Khrystyna Schubelka, Serghei Mangul, Stephen James O'Brien

Biology Faculty Articles

Documenting genome diversity is important for the local biomedical communities and instrumental in developing precision and personalized medicine. Currently, tens of thousands of whole-genome sequences from Europe are publicly available, but most of these represent populations of developed countries of Europe. The uneven distribution of the available data is further impaired by the lack of data sharing. Recent whole-genome studies in Eastern Europe, one in Ukraine and one in Russia, demonstrated that local genome diversity and population structure from Eastern Europe historically had not been fully represented. An unexpected wealth of genomic variation uncovered in these studies was not so …

Associations Of 24-Hour Movement Behaviors, Parental Academic Support, And Academic Achievement In Alaskan Adolescents, You Fu, Ryan D. Burns, Nora Constantino, Xavier Lopez, Samantha Dyer

International Journal of Physical Activity and Health

The purpose of this study was to examine the associations between meeting recommendations for 24-hour movement behaviors, parental academic support, and student academic achievement in a sample of Alaskan adolescents. Data were obtained from the 2019 Alaska Youth Risk Behavior Survey (YRBS; N = 1,897; mean age = 15.8 ± 1.3 years old). The associations between meeting recommendations for the 24-hour movement behaviors of physical activity, screen use, and sleep with high academic achievement (mostly A’s and B’s) were examined using weighted multivariable logistic regressions. Subpopulation analyses determined if associations differed by levels of parental academic support. Approximately 18.8% of …

European Mushroom Assemblages Are Phylogenetically Structured By Temperature, Claus Bässler, Jacob Heilmann-Clausen, Carrie Andrew, Lynne Boddy, Ulf Büntgen, Jeffrey Diez, Et. Al.

Michigan Tech Publications, Part 1

Recent global warming affects species compositions at an unprecedented rate. To predict climate-induced changes in species assemblages, a better understanding of the link between species occurrence and climate is needed. Macrofungal fruit body assemblages are correlated with the thermal environment at the European scale. However, it is still unknown whether macrofungal communities are also phylogenetically structured by thermal environments. Thermal environments are characterized by annual temperature means but also by intra-annual temperature variability (hereafter termed temperature seasonality), which are both considered in this study. Here, we used distribution data of 2882 species based on fruit body records across Europe to …

Frequency Of Bystander Exposure To Antibiotics For Enteropathogenic Bacteria Among Young Children In Low-Resource Settings, Elizabeth T. Rogawski Mcquade, Stephanie A. Brennhofer, Sarah E. Elwood, Timothy L. Mcmurry, Joseph A. Lewnard, Estomih R. Mduma, Sanjaya Shrestha, Najeeha Talat Iqbal, Pascal O. Bessong, Gagandeep Kang

Department of Paediatrics and Child Health

Children in low-resource settings carry enteric pathogens asymptomatically and are frequently treated with antibiotics, resulting in opportunities for pathogens to be exposed to antibiotics when not the target of treatment (i.e., bystander exposure). We quantified the frequency of bystander antibiotic exposures for enteric pathogens and estimated associations with resistance among children in eight low-resource settings. We analyzed 15,697 antibiotic courses from 1,715 children aged 0 to 2 y from the MAL-ED birth cohort. We calculated the incidence of bystander exposures and attributed exposures to respiratory and diarrheal illnesses. We associated bystander exposure with phenotypic susceptibility of E. coli isolates in …

Chd1 Promotes Sensitivity To Aurora Kinase Inhibitors By Suppressing Interaction Of Aurka With Its Coactivator Tpx2, Haoyan Li, Yin Wang, Kevin Lin, Varadha Balaji Venkadakrishnan, Martin Bakht, Wei Shi, Chenling Meng, Jie Zhang, Kaitlyn Tremble, Xin Liang, Jian H Song, Xu Feng, Vivien Van, Pingna Deng, Jared K Burks, Ana Aparicio, Khandan Keyomarsi, Junjie Chen, Yue Lu, Himisha Beltran, Di Zhao

Faculty, Staff and Student Publications

UNLABELLED: Clinical studies have shown that subsets of patients with cancer achieve a significant benefit from Aurora kinase inhibitors, suggesting an urgent need to identify biomarkers for predicting drug response. Chromodomain helicase DNA binding protein 1 (CHD1) is involved in chromatin remodeling, DNA repair, and transcriptional plasticity. Prior studies have demonstrated that CHD1 has distinct expression patterns in cancers with different molecular features, but its impact on drug responsiveness remains understudied. Here, we show that CHD1 promotes the susceptibility of prostate cancer cells to inhibitors targeting Aurora kinases, while depletion of CHD1 impairs their efficacy in vitro and in vivo. …

Vermicompost Versus Traditional Compost Amendments Leads To Different Soil Health Outcomes In A Mediterranean Vineyard, Elizabeth L. Luck

Master of Science in Environmental Sciences and Management Projects

Compost application has become a common practice in vineyard management to increase soil and crop health, however, the environmental externalities such as greenhouse gas emissions (GHG) from cropping systems that utilize organic fertilizers, such as compost, is uncertain. Vermicompost, which is compost created through the digestion of organic matter by earthworms, and its related ‘extract’ are commonly thought to provide more benefits for soil and crop health compared to standard compost. However, organic fertilizers such as vermicompost, vermicompost extract, and compost have not been compared in their effects on soil health in Mediterranean vineyards. In this two-year study, I assessed …

Nutrient Dynamics And Ecosystem Development Of Urban Forests, Gisselle A. Mejía

Dissertations, Theses, and Capstone Projects

Urban growth and expansion are a major component of global environmental change, with impacts on climate, air and water quality, biodiversity, and human well-being. Forests embedded in urban landscapes are critical in mitigating these impacts at local, regional, and continental scales. However, assessing urban forests is difficult because cities are heterogenous in physical, chemical, biological, and social dimensions. This heterogeneity has constrained how urban forests are defined, and therefore, how they are studied. The objective of this dissertation is to determine how these biophysical and social factors drive ecological processes in urban forests and will address three outstanding challenges in …

Geography, Niches, And Transportation Influence Bovine Respiratory Microbiome And Health, Jianmin Chai, Xinting Liu, Hunter Usdrowski, Feilong Deng, Ying Li, Jiangchao Zhao

Animal Science Faculty Publications and Presentations

Bovine respiratory disease (BRD), one of the most common and infectious diseases in the beef industry, is associated with the respiratory microbiome and stressors of transportation. The impacts of the bovine respiratory microbiota on health and disease across different geographic locations and sampling niches are poorly understood, resulting in difficult identification of BRD causes. In this study, we explored the effects of geography and niches on the bovine respiratory microbiome and its function by re-analyzing published metagenomic datasets and estimated the main opportunistic pathogens that changed after transportation. The results showed that diversity, composition, structure, and function of the bovine …

Evaluation Of Potassium Borate As A Volatility-Reducing Agent For Dicamba, Mason Castner, Jason K. Norsworthy, Trenton Roberts

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Dicamba was labeled in dicamba-resistant cotton (Gossypium hirsutum L.) and soybean [Glycine max (L.) Merr.] in 2017, resulting in a record number of off-target complaints. To address off-target movement via volatilization, experiments were conducted to evaluate the effectiveness of potassium tetraborate tetrahydrate (KBo) as a volatility-reducing agent (VRA) with dicamba. Low-tunnel experiments examined: (1) whether KBo functions as a dicamba VRA, (2) the relationship between KBo concentration and dicamba volatilization, (3) the effectiveness of KBo compared with potassium acetate as a VRA, and (4) the impact of KBo on dicamba volatilization with and without glufosinate. In a large-scale trial (0.4-ha …

The State Of Capacity Development Evaluation In Biodiversity Conservation And Natural Resource Management, Eleanor J. Sterling, Amanda Sigouin, Erin Betley, Jennifer Zavaleta Cheek, Jennifer N. Soloman, Kimberley Landrigan, Ana L. Porzecanski, Et. Al.

Natural Resource Management Faculty Publications

Capacity development is critical to long-term conservation success, yet we lack a robust and rigorous understanding of how well its effects are being evaluated. A comprehensive summary of who is monitoring and evaluating capacity development interventions, what is being evaluated and how, would help in the development of evidence-based guidance to inform design and implementation decisions for future capacity development interventions and evaluations of their effectiveness. We built an evidence map by reviewing peer-reviewed and grey literature published since 2000, to identify case studies evaluating capacity development interventions in biodiversity conservation and natural resource management. We used inductive and deductive …

Biosecurity Council Of Western Australia Annual Report 2021/2022, Biosecurity Council Of Western Australia

Biosecurity published reports

Understanding the needs and challenges of industry, community and government is key to providing relevant and constructive advice to government. During 2021/22, the Council continued to monitor biosecurity-related developments at national and State levels and proactively engaged with industry, community and government on biosecurity matters.

The key areas of advice that were progressed during the year were:

• The use of biological control agents to manage pests;
• Mechanisms for funding biosecurity and pest management; and
• Other matters as requested by the Minister.

Expulsive Greening: A Cross-Sectional Analysis Of Green Gentrification In The Resilience Paradigm, Brooklyn 2010–2020, Rose Jimenez

Dissertations, Theses, and Capstone Projects

Background: This project analyzes the spatial coincidence between gentrification typologies and urban greening in Brooklyn, New York from 2010 to 2020. Assets formed under the NYC Green Infrastructure Program were chosen as a proxy for urban greening to represent the spatial practice specifically within the 21st-century climate change resilience paradigm of development. Methods: First, five indexes measuring variations of economic and demographic conditions related to gentrification were applied to Brooklyn for comparative analysis: NOAA’s Social Vulnerability Indicators of Gentrification Pressure, The NYC Heat Vulnerability Index, The Small Area Index of Gentrification, Typologies of Gentrification and Displacement, and The Housing Risk …

Spatial Analysis Of Seven Islands In Indonesia To Determine Stunting Hotspots, Tiopan Sipahutar, Tris Eryando, Meiwita Budiharsana

Kesmas

Indonesia is a vast country struggling to reduce its stunting prevalence. Hence, identifying priority areas is urgent. In determining areas to prioritize, one needs to consider geographical issues, particularly correlations among areas. This study aimed to discover whether stunting prevalence in Indonesia occurs randomly or in clusters; and, if it occurs in clusters, which areas are the hotspots. This ecological study used aggregate data from the 2018 National Basic Health Research and Poverty Data and Information Report from the Statistics Indonesia. This study analyzed 514 districts/cities across 34 provinces on seven main islands in Indonesia. The method used was the …

Hydrogeochemical Analysis Of Unconfined Groundwater In The Surrounding Salt Farming Areas Of Pademawu, Madura, Indonesia, Arya Gemilang Wisnu, Jantama Wisha Ulung, Agus Mardyanto Mas

ASEAN Journal on Science and Technology for Development

The Pademawu coast has rapidly transformed into salt ponds, causing seawater intrusion and pollution. This study aims to examine the quality of groundwater in the surrounding settlement area of Pademawu and assess its eligibility for daily use. The psychochemical parameters of groundwater are measured in situ. Groundwater samples from several stations are analyzed in the laboratory and used to collect several chemical compounds, including Ca2+, Mg2+, Na+, K+, HCO3-, Cl-, SO42-, Fe2+, Mn2+, F-, NO2-, NO3, and CaCO3. The detected concentrations are then used to calculate TH, sodium adsorption ratio (SAR), %Na, PI, KR, and MH. Hydrochemical calculation and interpretation …

Spatial Analysis For Enhancing The Use Of Health Data Availability From Different Sources To Help The Decision-Making Process, Tris Eryando

Kesmas

Spatial analysis in public health has become a common method used by researchers to understand the distribution of public health aspects related to the surrounding environment. It can also be used to analyze individual information in the form of a dot and the location or line of aggregated information in a specific area of study. Another benefit is the possibility of using different data sources to be analyzed in one statistical model analysis, as long as the identification area is sufficiently clear as a key variable. Spatial analysis can show an object's distribution on a locational map and explain the …

Flint, Michigan Drinking Water Crisis, J. David Aiken

Cornhusker Economics

Briefly covers the Flint, Michigan drinking water crisis including providing some background, a timeline of events, and key takeaways from the perspective of public policy.

This article was originally prepared for distribution to students in Aiken's AECN 357 environmental and natural resources law course.

Using Plot Photographs To Estimate Tundra Vegetation Cover In Northern Alaska, Hana Christoffersen

Masters Theses

Plot photography can provide a quick, robust method to measure vegetation, especially in polar environments where logistics can be expensive and challenging. The success and widespread adoption of plot photography in the Arctic hinges on the accuracy of image analysis and data product interpretation. The relative cover of eight vegetation classes was estimated using a point frame and digital camera across thirty, 1-m² plots at Utqiaġvik, Alaska from 2012 to 2021. Geographic object-based image analysis (GEOBIA) was applied to generate objects and classify the three band (red, green, blue) images. Machine learning classifiers (random forest, gradient boosted model, classification …

Practicing Food Solidarity: Garden Biodiversity, Culturally Important Foods, And Diets Of Immigrant Farmworker Communities Accessing Emergency Food Pantries, Rebecca Leigh Garofano

Theses - ALL

No abstract provided.

Watering The Desert, Draining The Oasis: Navigating Drought, Development, And Irrigation Politics In The Draa Valley, Morocco, Jamie Fico

Theses - ALL

No abstract provided.

Temperature Effects On The Development Of The Axial Skeleton And Body Shape In Astyanax Mexicanus (Teleostei: Characidae), Joseph David Forberg

College of Science and Health Theses and Dissertations

Humans are causing large-scale changes in environmental conditions across the planet including in temperature. Changes in the environmental conditions can lead to phenotypic changes in ectotherms that affect adaptively important traits like body shape and the axial skeleton. Previous studies have shown that temperature changes during development significantly affects body shape and vertebral number in the Mexican tetra Astyanax mexicanus. How these changes arise early in development is not clear. In this study, I examine how changes in developmental temperature affect body shape in larval and juvenile fish, the order of ossification of elements of the axial skeleton, the size …

Multi-Species Multi-Seasonal Wildlife Occupancy Along An Urban-To-Rural Gradient In Southeastern Massachusetts, Bobbi M. Scully

Honors Program Theses and Projects

Documenting wildlife distributions along urban to rural gradients (URGs) creates opportunities to comparatively analyze wildlife habitat associations. In urban environments, wildlife diversity is expected to be impoverished and limited to invasive and generalist species while more diverse wildlife assemblages are expected in rural environments. Using motion-triggered game cameras I documented presence of the eastern gray squirrel (EGS), the coyote, and the white-tailed deer (WTD) along an URG in southeastern Massachusetts, to determine the effects of urbanization on their occupancy patterns. I used a multi-seasonal dynamic occupancy modeling approach to determine the overall occupancy probability of each study species along the …

From The Headlines: A Textual Analysis Of Social Polarization And Discord In Times Of Pandemic Across A Century In The United States, Alexa Demarco

Undergraduate Honors Theses

Within the past century, three major pandemics have affected the United States – the Spanish Flu, AIDS, and COVID-19. Each of these pandemics has tested the capabilities of the public health sector and the social resilience of the population. Scientists have studied the viruses and implemented public health measures to limit viral transmission, but the social responses to these preventative measures proved to be difficult to predict and control. The dissonance and polarization between the public health initiatives and the response of the general public in the most recent pandemic was apparent. Was this a pattern in other pandemics? Was …

An Ecological And Physiological Assessment Of Feather Mite-Bird Symbioses, Kevin James Krajcir

Student Theses and Dissertations

Feather mites are ectosymbiotic arthropods that reside primarily on the wing and tail feathers of most birds. Despite our growing understanding of feather mite biology, previous studies of the nature of the feather mite-avian host relationship report mutualism, parasitism, and commensalism. Such inconsistencies are likely due to narrow study designs that fail to capture the possibility of context dependency in this interaction. To provide some clarity surrounding the nature of this symbiotic system, we explored how geographical, climatic, and ecological contexts relate to variation in feather mite abundance and how that abundance, consequently, associates with multiple metrics of host condition …

Spatio-Temporal Changes In Vegetation In The Last Two Decades (2001–2020) In The Beijing–Tianjin–Hebei Region, Yuan Zou, Wei Chen, Siliang Li, Tiejun Wang, Le Yu, Min Xu, Ramesh P. Singh, Cong-Qiang Liu

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

In terrestrial ecosystems, vegetation is sensitive to climate change and human activities. Its spatial-temporal changes also affect the ecological and social environment. In this paper, we considered the Beijing–Tianjin–Hebei region to study the spatio-temporal vegetation patterns. The detailed analysis of a moderate-resolution imaging spectroradiometer (MODIS) data were carried out through the Google Earth Engine (GEE) platform. Our results show a slow and tortuous upward trend in the average leaf area index (LAI) in the study region for the periods 2001–2020. Specifically, Beijing had the highest LAI value, with an average of 1.64 over twenty years, followed by Hebei (1.30) and …

Road Traffic Accidents And Environmental Risk Factors In Erbil City, Hayman Mohammed Saeed Rashid, Kameran Hassan Ismail

Polytechnic Journal

Motorization has improved the lives of people and societies; these benefits have to go with a value. Though the number of lives lost in road accidents in high-income nations points to a downward style in recent decades, for many of the world's population, the liability of road-traffic injury in terms of social and economic costs is rising considerably. This study aims to determine the prevalence of the environmental factors associated with the outcomes in Erbil city. A community-based cross-sectional descriptive household visits survey study was carried out from March-November 2021 and was composed of 3743 individuals selected through a multi‐stage …

Manual Of Sustainable Urban Practices Towards Long-Term Conservation, Haley Kilmer

Capstone Collection

This paper analyzes how urban living and design can be detrimental to the surrounding ecosystems and how it is directly affecting the biodiversity loss of an area. To answer this question, I first did extensive background research on urbanization, climate change, and biodiversity loss as it relates to urban ecosystems. Then, the public’s perceptions were collected through surveys and interviews in order to make meaningful suggestions in the construction of an interactive, biological corridor map. The results showed that increasing the biodiversity of an urban area can help to mitigate many of the common environmental challenges associated with living in …

Strategies Of Adaptation And Coping To Climate Change Impacts Among Women Farmers In Guinayangan, Quezon, Philippines: A Life History And Comparative Approach, Miranda Salters

Capstone Collection

The unique struggles and needs of marginalized communities must be considered in a local context prior to addressing climate change mitigation on a global scale. The study uses life history interviews and focus group discussions to capture the challenges, diverse adaptation strategies, and coping mechanisms of women farmers from upland and coastal areas of Guinayangan, Quezon, Philippines. These perspectives may initiate advocacy efforts for increased support so that these agricultural livelihoods can continue to feed populations in the future, as climate change persists. Results suggest that both women from upland and coastal areas experience similar climate vulnerabilities, but the way …

Sustainable Avitourism On Curieuse Island In The Seychelles, Chesley Davis

Capstone Collection

In Seychelles, tourism is a vital part of the country’s overall economy. Increasingly, sustainable tourism is essential to conserve environments and wildlife, meet the needs of local communities and the state, and ensure the longevity of high-quality experiences for international visitors to the country. This project assesses sustainability of avitourism on Curieuse Island. The Seychelles has many endemic and pelagic birds that draw tourists from around the world, including the Seychelles Black Parrot, Seychelles Magpie Robin, and Seychelles Flycatcher. This is a mixed methods research project that entails bird biodiversity surveys, examination of birding databases, and personal observations. This study …

An Exploration Of Factors That Impact Uptake Of Human Papillomavirus Vaccines, David Samuel Redd

Theses and Dissertations

Introduction The discovery and continued development of vaccines is arguably one of the most important innovations in human history. Vaccination greatly reduces the worldwide incidence and transmission of diseases, preventing permanent injury and premature death. Mass vaccination campaigns have led to the eradication or partial eradication of severe infectious such as smallpox and polio, have reduced childhood mortality, and has led to an overall increase in average health in the human population globally. Despite the documented benefits of vaccination, vaccine hesitancy is increasing, and the uptake of some vaccines is low. Vaccines have been so successful at preventing disease that …

Valuing Angling On Reservoirs Using Benefit Transfer, Richard T. Melstrom, Mark A. Kaemingk, Nicholas W. Cole, John C. Whitehead, Christopher J. Chizinski, Kevin L. Pope

Biology Faculty Publications

Economic assessments are rarely applied to inland recreational fisheries for management purposes, especially when compared to fish, habitat, and creel assessments, yet economic assessments can provide critical information for management decisions. We provide a brief overview of economic value, key terminology, and existing economic techniques to address these issues. Benefit transfer, a technique used to measure economic value when an original analysis is not practicable, is conducted by drawing on existing estimates of economic value in similar contexts. We describe an application of benefit transfer to measure the economic value of several recreational fisheries in Nebraska, USA. We examine two …