Digital Commons Network^™

An Exploration Of Palauan Fishing Methods And Fisheries: A Study For The Conservation Of Dugongs, Mia Glover

Electronic Theses and Dissertations

The dugong (Dugong dugon) is an important marine mammal in Palau. However, current population dynamics are not well understood. This study aimed to connect scientific data with local knowledge by examining the social implications of changing fishing methods and their impact on dugong population dynamics in the face of climate change and fisheries commercialization. Through interviews with local fishers, it was found that destructive fishing methods like trawling and long lining have led to habitat loss and degradation for dugongs. These tactics, driven by economic factors, have disrupted the delicate balance between human activities and the preservation of dugong habitats, …

Modeling Occupancy And Detection Probabilities To Update The Status Of Threatened Eastern Massasauga Rattlesnake Populations, Arin J. Thacker, Eric T. Hileman, Paul Keenlance, Eric M. Mccluskey, Alyssa Swinehart, Jennifer Kovach, Jennifer A. Moore

Open Access Publishing Support Funded Articles

Knowledge of a species’ distribution throughout a landscape is crucial for developing long-term conservation practices and effective management plans. Accurate distributional data are particularly important for threatened or rare species with a broad geographic range and low detectability in their preferred habitats, as surveying and successfully encountering this type of species is oftentimes difficult. One such species is the eastern massasauga (Sistrurus catenatus), a small- bodied, federally threatened rattlesnake with a distribution centered around the Great Lakes region. The current status of many massasauga populations remains uncertain, hindering effective recovery efforts. We used single-season occupancy models to reassess the status …

Antioxidant Activity And Total Phenolic Compounds Of Commiphora Gileadensis Extracts Obtained By Ultrasonic-Assisted Extraction, With Monitoring Antiaging And Cytotoxicity Activities, Hani Ahmed, Marwan M A Rashed, Marwan Almoiliqy, Mohammed Abdalla, Mohanad Bashari, Mohamed Y Zaky, Zhu Hailin, Taha A A Naji, Ahmed Eibaid, Jinpeng Wang, Li-Ping Jiang

Faculty, Staff and Student Publications

Commiphora gileadensis (C. gileadensis) has been identified and linked with various health benefits and pharmaceutical potential for its phytochemical activities and chemical constituents. This study aimed to evaluate ultrasonic‐assisted extraction (USE) technique for total phenols content from C. gileadensis leaf compared to the hydrodistillation extraction (HDE). Our results showed that the USE operating conditions were identified as: MeOH·H2O solvent‐to‐fresh sample ratio of 80:20 (v/v); ultrasonic power/frequency at 150 W/20 kHz; and a temperature of 40 ± 1°C; subjected to acoustic waves intermittently for a calculated time (5 min) during the total programmed time of 12 min. The USE …

Concomitant Targeting Of Flt3 And Btk Overcomes Flt3 Inhibitor Resistance In Acute Myeloid Leukemia Through The Inhibition Of Autophagy, Weiguo Zhang, Guopan Yu, Hongying Zhang, Mahesh Basyal, Charlie Ly, Bin Yuan, Vivian Ruvolo, Sujan Piya, Seemana Bhattacharya, Qi Zhang, Gautam Borthakur, Venkata Battula, Marina Konopleva, William G Rice, Michael Andreeff

Faculty, Staff and Student Publications

Strategies to overcome resistance to FMS-like tyrosine kinase 3 (FLT3)-targeted therapy in acute myeloid leukemia (AML) are urgently needed. We identified autophagy as one of the resistance mechanisms, induced by hypoxia and the bone marrow microenvironment via activation of Bruton tyrosine kinase (BTK). Suppressing autophagy/BTK sensitized FLT3- mutated AML to FLT3 inhibitor-induced apoptosis. Furthermore, co-targeting FLT3/BTK/aurora kinases with a novel multikinase inhibitor CG-806 (luxeptinib) induced profound apoptosis in FLT3-mutated AML by co-suppressing FLT3/BTK, antagonizing autophagy, and causing leukemia cell death in FLT3-wildtype AML by aurora kinase-mediated G2/M arrest and polyploidy, in addition to FLT3 inhibition. Thus, CG-806 exerted profound anti-leukemia …

Newer Surveillance Data Extends Our Understanding Of The Niche Of Rickettsia Montanensis (Rickettsiales: Rickettsiaceae) Infection Of The American Dog Tick (Acari: Ixodidae) In The United States, Catherine A. Lippi, Holly D. Gaff, Robyn M. Nadolny, Sadie J. Ryan

Biological Sciences Faculty Publications

Background: Understanding the geographic distribution of Rickettsia montanensis infections in Dermacentor variabilis is important for tick-borne disease management in the United States, as both a tick-borne agent of interest and a potential confounder in surveillance of other rickettsial diseases. Two previous studies modeled niche suitability for D. variabilis with and without R. montanensis, from 2002-2012, indicating that the D. variabilis niche overestimates the infected niche. This study updates these, adding data since 2012.

Methods: Newer surveillance and testing data were used to update Species Distribution Models (SDMs) of D. variabilis, and R. montanensis infected D. variabilis, in …

Strategies For Recruiting Underrepresented In Medicine And Sexual And Gender Minority Students To Emergency Medicine, Lauren T Wilson, Benjamin Weigel, Edgardo Ordonez, Navdeep Sekhon, Adedoyin Adesina, Anisha Turner, Aleksandr M Tichter, Sarah Bezek, Ynhi T Thomas

Faculty, Staff and Students Publications

BACKGROUND: Despite having well-described benefits, diversifying the physician workforce has been an ongoing challenge. Within emergency medicine (EM), multiple professional organizations have identified expanding diversity and inclusion as top priorities. The following is a description of an interactive session held at the SAEM annual meeting addressing recruitment strategies for underrepresented in medicine (URiM) and sexual and gender minority (SGM) students into EM.

METHODS: During the session, the authors provided an overview of the current state of diversity in EM. In the small-group portion of the session, a facilitator helped characterize the challenges programs face in recruiting URiM and SGM students. …

Examination Of Parent-Reported Differences In Children’S Daily Screen Use, Sleep, And Sleep Hygiene Behaviors During The School Year And Summer And Their Association With Bmi, Jennette P Moreno, Alexis C Wood, Brooke Reichek, Hafza Dadabhoy, Tom Baranowski, Debbe Thompson, Teresia M O'Connor

Faculty, Staff and Students Publications

OBJECTIVE: The current study examined school-summer differences in children's sleep patterns and sleep hygiene. Cross-sectional relationships with children's sleep, sleep hygiene, and weight status were explored during the school year and summer.

METHODS: Children (5-8 years) and their parents (n = 197 dyads) were recruited from 4 schools in southeastern Texas and via Facebook. Parents reported children's school year and summer sleep, sleep hygiene, and screen media use. Children's body mass index (BMI) was objectively assessed at the beginning and end of the summer. Associations between children's sleep hygiene and screen media use, sleep duration, and weight status were explored. …

Standardizing Sustainable Aquaponic Production Of Leafy Greens And Fish: A Comparison With Conventional Systems In The United Arab Emirates, Drishya Nishanth

Theses

The production of leafy green vegetables through aquaponics is established worldwide, but the production of herbs which are used in day-to-day life in the United Arab Emirates is not yet explored in this system in terms of production efficiency, water usage and the nutrient parameters. In the current study, basil (Ocimum basilicum L.) and coriander (Coriandrum sativum L.), the two commonly used herbs, were grown in a traditional aquaponics system using tilapia fish and catfish effluent water (soil-less agriculture) and an irrigation-based greenhouse cultivation system (soil cultivation). The study's major goal is to evaluate several growth techniques for …

Towards Urban Biodiversity: Simulating Design Parameters For Wildlife-Inclusive Green Infrastrcuture, Alisa Abdulghany, Baher Farahat

BAU Journal - Creative Sustainable Development

As of 2021, more than half of the global population resides in urban areas. This resulted in an overwhelming footprint affecting species habitat areas leading to biodiversity loss. By definition, urban biodiversity is the diversity of living things within the urban realm. By providing chances for habitat as part of new developments, preserving on-site habitats, and attempting to connect with the local ecosystems, we can help promote biodiversity. Green infrastructure (GI), which includes all semi-natural areas in the urban context, can serve as a vessel for biodiversity. Therefore, the problem can be defined by the urban footprint that expands on …

Nutrition In Times Of Crisis: A Qualitative Study In Siargao Island, Philippines, During The Covid-19 Pandemic, Gideon Lasco, Vincen Gregory Yu, Julie Madelo Compra, Phetdavanh Leuangvilay, Rapeepong Suphanchaimat, Yunting Zhang, Charina Javier

Development Studies Faculty Publications

Objectives

Despite the public-health significance of both malnutrition and crises, little has been done to explore the convergence of the two domains and develop ways to improve policies and practices, especially in rural communities. This article remedies that knowledge gap by focusing on nutrition-related changes, responses, and practices during crisis situations in Siargao Island, Philippines, using the COVID-19 pandemic as a backdrop.

Methods

Forty-six (46) semi-structured interviews were conducted among parents, caregivers, local health workers, and local officials of Del Carmen, Siargao Island. Principles of thematic analysis were applied to data analysis using NVivo 12. Afterwards, the preliminary data were …

Effects Of Anti-Retroviral Therapy On Baseline Serum Interleukin-18 Levels In Hiv-I Infected Patients Relative To Viral Suppression And Cd4+ Gain: A Prospective Pilot Study, Olayemi Balogun, Bukhari Isah Shuaib, Abdulrasheed Usman, Aminu Abba Yusuf, Bolanle O. P. Musa, Obiako O. Reginald, Aliyu Ahmadu Babadoko

BioMedicine

Background: In HIV infection, dysregulation of cytokines, including interleukin 18 (IL-18), has been linked to poor clinical outcomes in studies mainly conducted in resource-rich countries. This phenomenon has not been well-studied in resource-limited settings where outcomes could be confounded by exposure to endemic infections and genetic factors.

Objectives: Therefore, the influence of immunological and virological status of HIV-infected, antiretroviral therapy (ART)-naïve patients on serum IL-18 levels at baseline (pretreatment) and 24 weeks following initiation of combination ART (cART24) in a resource-limited setting was investigated. Methods Using the cross-sectional and longitudinal mixed method design, a total of Forty-four (44) newly diagnosed …

Practical Solutions To The Invasion Of Lionfish In Utila, Honduras: Science, Education, Food, And Jewelry, Carolyn Corley

Undergraduate Honors Theses

Lionfish (Pterois sp.) are invasive species capable of devastating coral reef ecosystems due to their lack of predators, large appetites, generalist diet, high fecundity, and rapid spawning rates. As lionfish have expanded their distribution across the Caribbean, many conservation groups have taken it upon themselves to systematically remove these predators from environments where they are threatening native species. However, few have involved the community the way I observed while interning with the Whale Shark and Oceanic Research Center in Utila, Honduras. Protecting coral reefs is extremely important, especially in small communities like Utila, where the majority of people’s …

Social Creatures: The Impact Of Solitary Confinement On Psychophysiological Health And How Inmates Percieve Their Humanity And Social Well-Being, Julia Austin

Honors Projects

This paper will define and examine the use of solitary confinement within the United States prison system and review its mental, physical, and social impacts. As social creatures, human mental and physical well-being depends on meaningful social interactions absent in segregation units. As it currently stands, vulnerable populations, including racial minorities, LGBTQIA+ individuals, and those with developmental disabilities or psychological disorders, are at risk of irrevocable harm and abuse within these facilities from staff as well as other inmates. With a rotating 80,000 inmates held in solitary confinement every day, the current structure of the prison system deemphasizes rehabilitation and …

Bura Ura, Kendu Waiyo (Rain Falls, Water Rises): The Tyranny Of Water Insecurity And An Agenda For Abolition In Kodi (Sumba Island, Indonesia), Cynthia Twyford Fowler

Faculty Scholarship

This article explores the dynamic links between transformations in freshwater ecosystems and social changes in the Kodi region of Sumba (Indonesia). Insights into the politics surrounding changing hydrosocial systems are generated by using a feminist anthropology approach together with critical development studies and intersectionality theory. In aligning with fellow feminists whose advocacy sometimes takes the form of scholarship, I lay out a five-prong strategy for collecting empirical evidence from persons who are vulnerable when hydrological systems change and offer eight principles for future development interventions. The argument related to the five-prong toolkit is that by conducting intensive, extensive, opportunistic, and …

Influence Of Environmental Gradients On Genomic Variation In Pediatric Commensals And Pathogens, Sanjam Sawhney

Arts & Sciences Graduate Student Theses and Dissertations

Microbes interact with humans in a myriad of ways. They come together in the human gut to form complex communities that collectively transform and individually evolve in response to changing environmental conditions. Individual microbes can also cause human infection and escape antibiotic clearance through acquisition and development of novel resistance mechanisms. In this thesis, I chronicle the relationships between microbes and humans across two axes: from complex communities to single isolates, and from targeted studies of pediatric populations vulnerable to microbiome perturbations and pathogen challenge, to broader human and animal cohorts spanning colonizing and diagnostic environments.In Chapter 2, I extensively …

An Evolving View Of Host-Microbiome Co-Development In Healthy And Undernourished Children, Robert Yuzen Chen

Arts & Sciences Graduate Student Theses and Dissertations

Affecting more than 795 million children under the age of 5, childhood undernutrition is one of the greatest impediments to the flourishing of humankind. Current dietary interventions fail to ameliorate many of the long-term sequelae of undernutrition, including immune system dysfunction, impaired vaccine responses, persistent central nervous system (CNS) dysfunction, and early mortality. These shortcomings suggest that our understanding of the biological state of undernutrition is incomplete, and that traditional food therapies fail to target key drivers of undernutrition-dependent pathologies. Recently, work from our lab has provided preclinical evidence demonstrating that impaired development of the distal gut microbiota plays a …

Population Dynamics And Habitat Use By Gray Bats In An Anthropogenically Altered Landscape, Haley Price

Electronic Theses & Dissertations

Habitat loss resulting from land use change is among the greatest threats to biodiversity. Yet, in some cases, imperiled wildlife species may benefit from anthropogenic disturbance. The expansion of urbanization, agriculture, renewable energy, and mining practices impact conservation efforts for threatened and endangered bat species, and particularly species that are affected by white nose syndrome (WNS). The federally endangered gray bat (Myotis grisescens) is a cavernicolous species that is susceptible to WNS. Due to their unique roosting and foraging requirements, gray bats inhabit a small portion of the accessible caves within their geographic range. As habitat loss persists, …

Why Teach? Exploring The Motivations And Expectations Of First-Year, Alternatively Certified Agriscience Teachers, Sarah E. Larose, Blake C. Colclasure, Anna J. Warner, Debra M. Barry, Edward W. Osborne

Journal of Research in Technical Careers

School-Based agricultural education increasingly depends upon alternatively certified (AC) teachers to teach agriculture across the United States. Understanding why these individuals become teachers is an important step to better recruit and retain educators who do not complete traditional preparation programs. The purpose of our study was to explore the backgrounds, motivations, and expectations of AC agriscience teachers joining the profession. Our study was guided by the social cognitive career theory and utilized a qualitative phenomenological approach. We interviewed seven AC agriscience teachers in Florida during their first-year teaching to explore their journey into teaching agricultural education. Six major themes were …

Evaluation Of Early Maturing Cultivars, Optimal Harvest Timing, And Canopy Reflectance Of Peanut To Maximize Grade And Yield, Joseph Bryan Whittenton

Theses and Dissertations

Peanut digging timing is difficult to predict due to indeterminate growth and peanut pods maturing underground, resulting in the need to research methods that provide consistent measurements, while reducing time and effort for farmers and researchers. Experiments were conducted to evaluate the accuracy of the Maturity Index 1 and Maturity Index 2 in predicting peanut grade, the accuracy of the North Carolina 2 degree day method in predicting peanut yield, and remote sensing vegetative indices sensitivity equivalence (SEq) to peanut Maturity Index 2 and harvest grade (TSMK) for cultivars IPG-914 and Georgia-06G in Mississippi.

Maturity Index 1 and …

Spatial Conservation Planning In The Southeastern United States: Alignments And Opportunities, Bradly Stewart Thornton

Theses and Dissertations

Conservation managers and planners need the ‘best available science’ to support robust and defensible decisions, ensuring that public resources are appropriately allocated. Spatial planning products and decision-support tools developed for this purpose should enable partner organizations to achieve focus, coordination, and increased effectiveness in their investments and actions. Whereas conservation partnerships have historically created distinct planning tools, there is increasing interest for improved coordination, communication, and unifying biological datasets to improve the cohesiveness of regional management activities. We sought to inform spatial conservation planning efforts in the southeastern United States through the development of species distribution models for focal avian …

Coloration Of Western Alaskan Lakes From Spectral Data Correlates With Environmental Factors, Annemarie Timling

Undergraduate University Honors Capstones

The Yukon Kuskokwim Delta region of Alaska consists of over 100,000 small lakes; it is one of the largest lake-dense regions of Alaska. These small lakes are critical aquatic ecosystems that provide habitats for wildlife and play an important role in carbon and nutrient cycling. Lakes in the Yukon Kuskokwim Delta have a wide range of visible and near-infrared satellite spectra, which can vary over small spatial scales. These spectral differences may provide insight into the environmental properties of these small shallow lakes. Therefore, we want to investigate the relationship between the spectral data and environmental differences in these lakes. …

Comparative Analysis Of Rhizosphere And Endosphere Microbiome Of Different Blueberry Species (Vaccinium Sp.), Niladri Bhowmik

Master's Theses

Blueberries are an important agricultural commodity in all over the United States. Due to its health benefits, there is a huge demand globally, thus expanding the industry. Breeding programs are essential to maintain such industries. Challenges that play a role in contemporary breeding programs are various biotic and abiotic stress factors. Studies have shown that microorganisms are recruited by plants to alleviate them during stressful conditions. Though blueberries have been cultivated for about 100 years, how the microbiome has been affected due to this is poorly understood. We hypothesized that interspecific crosses and artificial selection have significantly changed the microbiome …

Du Undergraduate Showcase: Research, Scholarship, And Creative Works, Caitlyn Aldersea, Justin Bravo, Sam Allen, Anna Block, Connor Block, Emma Buechler, Maria De Los Angeles Bustillos, Arianna Carlson, William Christensen, Olivia Kachulis, Noah Craver, Kate Dillon, Muskan Fatima, Angel Fernandes, Emma Finch, Colleen Cassidy, Amy Fishman, Andrea Francis, Stacia Fritz, Simran Gill, Emma Gries, Rylie Hansen, Shannon Powers, Jacqueline Martinez, Zachary Harker, Ashley Hasty, Mykaela Tanino-Springsteen, Kathleen Hopps, Adelaide Kerenick, Colin Kleckner, Ci Koehring, Elijah Kruger, Braden Krumholz, Maddie Leake, Lyneé Alves, Seraphina Loukas, Yatzari Lozano Vazquez, Haley Maki, Emily Martinez, Sierra Mckinney, Audrey Mitchell, Kipling Newman, Audrey Ng, Megan Lucyshyn, Andrew Nguyen, Stevie Ostman, Casandra Pearson, Alexandra Penney, Julia Gielczynski, Tyler Ball, Anna Rini, Christina Rorres, Simon Ruland, Helayna Schafer, Emma Sellers, Sarah Schuller, Claire Shaver, Kevin Summers, Isabella Shaw, Madison Sinar, Claudia Pena, Apshara Siwakoti, Carter Sorensen, Madi Sousa, Anna Sparling, Alexandra Revier, Brandon Thierry, Dylan Tyree, Maggie Williams, Lauren Wols

DU Undergraduate Research Journal Archive

DU Undergraduate Showcase: Research, Scholarship, and Creative Works

Relationships Between Vector Mosquitoes And Climate Change Derived From Long Term Ecological Data In The United States, Nicholas Scott

Honors Program Theses and Projects

Climate change has significant ecological and societal consequences as evident from the past few decades. It has had a large impact on many species, including vector mosquitoes. Although how climate change impacts mosquitoes of the tropical world has been explored, temperate areas remain inadequately studied. Therefore, the medical and healthcare sectors are underprepared for treating mosquito-borne diseases (EEE and Western Nile virus). Based on a long-term ecological dataset covering the past ~10 years across 45 sites, we streamlined, processed, and subsequently analyzed data by building statistical models to understand changes among mosquito populations in the US in response to climate …

A Geospatial Approach To Identify Patterns Of Antibiotic Susceptibility At A Neighborhood Level In Wisconsin, United States, Laurel Legenza, Kyle Mcnair, Song Gao, James P Lacy, Brooke J Olson, Thomas R Fritsche, Lucas T Schulz, Samantha Lamuro, Frances Spray-Larson, Tahmeena Siddiqui, Warren E Rose

Faculty, Staff and Student Publications

The global threat of antimicrobial resistance (AMR) varies regionally. This study explores whether geospatial analysis and data visualization methods detect both clinically and statistically significant variations in antibiotic susceptibility rates at a neighborhood level. This observational multicenter geospatial study collected 10 years of patient-level antibiotic susceptibility data and patient addresses from three regionally distinct Wisconsin health systems (UW Health, Fort HealthCare, Marshfield Clinic Health System [MCHS]). We included the initial Escherichia coli isolate per patient per year per sample source with a patient address in Wisconsin (N = 100,176). Isolates from U.S. Census Block Groups with less than 30 isolates …

Disturbance Regimes And Management Strategies Of Mountain Ash Forest Ecosystems In Victoria, Australia; A Literature Review, Zoe Plumb

Sustainability and Social Justice

This paper discusses the ecology of mountain ash forests, the disturbances regimes that currently exist in these ecosystems, and finally addresses the current management practices and future management practices. Mountain ash forests are subjected to a wide range of research in the Central Highlands of Victoria, an area approximately 14,000 hectares in range. These forests are dominated by montane ash trees (Eucalyptus regnans F. Muell), which are critically endangered and at risk of collapse, attributed to the decline in large hollow-bearing trees throughout the region. Management of these forests are controlled by the Department of Environment, Land, Water, and …

Country-Scale Crop Field Mapping For Zambia Using U-Net, Yao-Ting Yao

Sustainability and Social Justice

Cropland mapping is a crucial tool for evaluating food security. Cropland in African countries is expected to expand by at least 140M ha by 2050 to satisfy food demand. Developing accurate, large-area cropland maps of Africa’s smallholder agricultural systems is critical. To address this need, we use U-Net, a convolutional neural network, to map cropland for the year 2021 in the Republic of Zambia, a country experiencing rapid agricultural growth. To undertake this work, we first created a labeling platform and workflow protocol on Google Earth Engine (GEE) to collect labels from high spatial-resolution Planet-Scope NICFI Basemaps (4.77m) within grids …

Evaluation Of Rice Stink Bug, Oebalus Pugnax (F.), Resistance To Lambda-Cyhalothrin And The Economic Impact On Rice Grain Quality For Multiple Foliar Insecticides, Trevor Bradley Newkirk

Graduate Theses and Dissertations

Rice stink bug, (RSB), Oebalus pugnax (F.), (Fabricius 1775) is the major pest of headed rice, Oryza sativa L. in the southern rice producing states. The evaluation of current insecticides is imperative to efficient and economical RSB management for rice growers. Multiple reports of field failures with lambda-cyhalothrin have been documented since 2019. Lambda-cyhalothrin has been the standard for RSB control for the past two decades. The objective for this research was to determine if RSB is becoming resistant to lambda-cyhalothrin in Arkansas, and the most economical insecticide choice for growers with respect to RSB control and grain quality. RSB …

Climate Change, Food Security, And The Myth Of Unlimited Abundance, Susan A. Schneider

Journal of Food Law & Policy

The Biden-Harris White House can be commended for convening the historic White House Conference on Hunger, Nutrition, and Health highlighting the critical connections between access to healthy food and sustaining a healthy population. This article explores the impact of climate change and seeks to fill a critical gap in the national discussion. It argues that dramatic changes are needed in the way we think about domestic food security and that meaningful change will be required to assure an adequate supply of healthy food, as envisioned by the White House Conference. It explores the impact of the changes to the climate …

Assessing The Utility Of High-Throughput Phenotyping For Ecological Applications, Annabree Corlew

Honors Theses

A phenotype describes the expressed traits of an organism. These traits can provide insight into interactions between an organism and its environment, making them a key focus of ecological research. But the process of phenotyping traits can be tedious to collect for large-scale experiments. High-throughput phenotyping software has the ability to speed up the phenotyping process by allowing multiple traits to be phenotyped at once. However, the utility of this relatively new and continually developing computational tool is still being assessed, especially beyond applications focused on agricultural crops and grasses. I investigated the accuracy and efficiency of the open-access high-throughput …