Digital Commons Network^™

Antibiotic Resistance At Sequence, Population, And Global Scales, Kevin Blake

Arts & Sciences Graduate Student Theses and Dissertations

Antibiotic resistance (AR) can be studied at multiple scales. The smallest is at the level of the DNA or amino acid sequence of AR genes, characterizing how AR genes are encoded, regulated, and expressed. Next is the level of protein structure, deciphering the 3D shape of AR proteins and how that shape affects function. The next higher scale is that of biochemistry, studying the kinetics of these proteins’ mechanism of action and interactions with drug molecules. The level of populations studies individual species of bacteria that are resistant to specific antibiotics. The next higher scale, of microbiomes, examines many species …

Non-Random Sampling Measures The Occurrence But Not The Strength Of A Textbook Trophic Cascade, Daniel R. Macnulty, Elaine M. Brice, Eric J. Larsen

Wildland Resources Faculty Publications

Although sampling the five tallest young aspen in a stand is useful for detecting the occurrence of any aspen recruitment, this technique overestimates the population response of aspen to wolf reintroduction. Our original conclusion that random sampling described a trophic cascade that was weaker than the one described by non-random sampling is unchanged.

Using Genetic Comparisons Of Populations From Arizona, Mexico, And Texas To Investigate Fall Armyworm Migration In The American Southwest, Rodney N. Nagoshi, Ashley E. Tessnow, Yves Carrière, Jeff Bradshaw Dr., Kyle Harrington, Gregory A. Sword, Robert L. Meagher

Department of Entomology: Faculty Publications

Fall armyworm (FAW) is a global agricultural pest, causing substantial economic losses in corn and many other crops. Complicating efforts to control this pest is its capacity for long distance flights, which has been described in greatest detail for the central and eastern sections of the United States. FAW infestations are also routinely found in agricultural areas in southern Arizona, which lie beyond the western limits of the mapped migratory pathways. Climate suitability analysis found that the affected Arizona locations cannot support permanent FAW populations, indicating that these FAW most likely arise from annual migrations. A better understanding of this …

Twelve Wallace Myths, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace’s (1823-1913) bicentennial year is a good time to take stock. In this presentation I discuss twelve Wallace-related issues that I feel have been poorly taken up. These range from the biological to the biographical, including subjects such as social criticism, human evolution, autobiographical memory, natural selection, national affinities, spiritualism, and wokeism.

A Comparison Of The Push And Pull Production Systems At Their Optimal Designs Under The Economic Consideration, Ajstd Editorialboard

ASEAN Journal on Science and Technology for Development

No abstract provided.

Demographic History Shapes North American Gray Wolf Genomic Diversity And Informs Species' Conservation, Bridgett M. Vonholdt, Daniel R. Stahler, Kristin Brzeski, Marco Musiani, Rolf O. Peterson, Michael Phillips, John Stephenson, Kent Laudon, Erin Meredith, John A. Vucetich, Jennifer A. Leonard, Robert K. Wayne

Michigan Tech Publications

Effective population size estimates are critical information needed for evolutionary predictions and conservation decisions. This is particularly true for species with social factors that restrict access to breeding or experience repeated fluctuations in population size across generations. We investigated the genomic estimates of effective population size along with diversity, subdivision, and inbreeding from 162,109 minimally filtered and 81,595 statistically neutral and unlinked SNPs genotyped in 437 grey wolf samples from North America collected between 1986 and 2021. We found genetic structure across North America, represented by three distinct demographic histories of western, central, and eastern regions of the continent. Further, …

Economics Of Conservation And The Application To The Runkle Woods, Indigenous American Cultural Student Association, Brad Kerry, Eliza Hendrix, Mateo Bush, Ryan Diza

Runkle Woods Symposia

Student Eliza Hendrix presents a brief history of local Native American culture to give context to Adjunct Professor Brad Kerry's portion of the presentation focusing on conservation through an economic lens.

Effects Of Proximity To Roads On Tissue Surface Ph, Conductivity And Heavy Metal Contents Of A Grazing Grass Species, C. Munyati, M. S. Mathole

IGC Proceedings (1977-2023)

Globally, road networks are expanding in the countryside. Though beneficial to society, the roads potentially have detrimental effects on grazing quality. The effects are seldom quantified. In this study Eragrostis lehmanniana, a common native grazing grass in parts of the world, was examined for indicative data on the impacts of roads on grasses. Aboveground tissue samples were collected monthly on three occasions during the growing season, at the same respective locations near three high traffic highways. Non-senescent specimens were sampled along transects of up to 400 m perpendicular to the highways, starting from the road edge and then at …

Biodiversity And The Ecological Role Of Grasslands Environment And Territory, Elimane Lo, Makhmutov Serguei, Badim Almazov

IGC Proceedings (1977-2023)

Biodiversity is all the living species that inhabit the planet: plants, animals, microorganisms, but also their genetic diversity and all the ecosystems in which they live. The preservation of biodiversity is vital, because the organisms that constitute it participate in the major ecological cycles of air, soil and water It is today recognized for its intrinsic value and for the functions it provides in ecosystems. The grassland and the hedges that surround them play a key role in carbon storage, water purification, biodiversity and the typicity of landscapes. They partly provide the plants necessary for feeding herds of herbivores (cattle, …

Circular Food Education: Developing A Food Education Programme Based On Sustainability, Experiential Learning And Pleasure In Irish Primary Schools, Michelle Darmody Dr

Doctoral

This research explored how an expanded and sustained education about food within the primary school curriculum in the Republic of Ireland could be achieved. A constructivist ontology underpinned the project, with multiple theoretical frameworks related to constructivist learning and building agency, informing the study. A multi-method action research methodology was used, providing practical solutions through action, reflection, practice and theory. A narrative review of the literature and existing policy preceded three sections of fieldwork. A scoping consultation with key stakeholders was followed by the development and piloting of a food education programme entitled the Global Citizenship Food and Biodiversity Theme …

Ecological Change And Livestock Governance In A Peruvian National Park, Kenneth R. Young, Eyner Alata, Rodney Chimner, Randall B. Boone, Gillian Bowser, Laura Bourgeau-Chavez, Beatriz Fuentealba, Jessica Gilbert, Javier A. Ñaupari, Molly H. Polk, Sigrid Resh, Cecilia Turin, Melody Zarria-Samanamud

Michigan Tech Publications

While the grazing of livestock has occurred for millennia in the Andes, current sustainability debates center on concerns with co-managing climate change and pastoralism. These discussions have special resonance in places protected by the state for biodiversity, scenery, and sustainable and traditional land uses, such as those found in protected areas and biosphere reserves. For this article, we integrate data from a social-ecological research project on the land use systems that affect high-elevation ecosystems in Peru’s Huascarán National Park, with special emphasis on the wetlands. We used land cover and land use data and insights from interactions with pastoralists to …

Population Genetic Structure Of Testudo Hermanni Boettgeri (Hermann's Tortoise) In Türkiye, Can Yilmaz, Oğuz Türkozan, Sezgi̇n Karaman, Celal Ülger

Turkish Journal of Zoology

Multidisciplinary approaches for the conservation of endangered species have great importance in preparing management plans. In addition to ecological and population demographic parameters, genetic data provide vital information for conservation management plans for a species. The Hermann's tortoise (Testudo hermanni) suffers from illegal trade, fires, habitat fragmentation and destruction, and therefore, the genetic diversity of the regional populations has been affected. It was aimed herein to impart knowledge on the population genetic structure of T. hermanni boettgeri, listed as near threatened by the International Union for Conservation of Nature Red List as a subspecies and has limited …

See Me, Hear Me, Know Me: Perspectives On Diet And Physical Activity Influences Among Teens Living In Rural Texas Communities, Debbe Thompson, Julie Miranda, Chishinga Callender, Jayna M Dave, Godlove Appiah, Salma M A Musaad

Faculty, Staff and Students Publications

Teens in rural communities are at greater risk of obesity than teens in urban areas. Diet and physical activity influence obesity risk. Understanding their perspectives is an important step in intervention design. This qualitative investigation explored teen perspectives on how living in a rural community influenced their diet and physical activity choices. Forty parent-teen pairs were recruited. Data collection included surveys and telephone interviews. This paper reports teen perspectives identified in the first interview. Thematic analysis was used to code and analyze the data. Findings revealed that the primary factor driving teens' diet and physical activity behaviors was the teens …

Integrated Periphyton Biofilters In Marine Recirculating Aquaculture Systems, Adam N. Bell

USF Tampa Graduate Theses and Dissertations

Marine aquaculture is a growing industry that has the potential to reduce eutrophication, overfishing, and loss of biodiversity. Recirculating aquaculture systems (RAS) are a type of aquaculture system that decreases discharge, raises biological control, and conserves water; however, RAS are challenged due to high energy cost, low biodiversity, water quality control, and waste nutrients. Periphyton biofilters are a new technology that allows for feed production, water quality control, microbial diversity, and resource recovery in marine aquaculture systems. The overarching question that this dissertation investigates is, how can periphyton biofilters be integrated into RAS to address the challenges of modern sustainable …

The Spatial Dissimilarities And Connections Of The Microbiota In The Upper And Lower Respiratory Tract Of Beef Cattle, Zhihao Zhang, Chengqian Zhang, Yikai Zhong, Shuli Yang, Feilong Deng, Ying Li, Jianmin Chai

Animal Science Faculty Publications and Presentations

Bovine respiratory disease (BRD) causes morbidity and mortality in cattle. The critical roles of the respiratory microbiota in BRD have been widely studied. The nasopharynx was the most popular sampling niche for BRD pathogen studies. The oral cavity and other niches within the respiratory tract, such as nostrils and lung, are less assessed. In this study, oropharyngeal swabs (OS), nasal swabs (NS), nasopharyngeal swabs (NP), and bronchoalveolar lavage (BAL) were collected from calves located in four countries and analyzed for investigation of the dissimilarities and connections of the respiratory microbiota. The results showed that the microbial diversity, structure, and composition …

Editorial: Respiratory Microbiome In Health And Disease, Yimin Zhuang, Tao Ding, Jiangchao Zhao, Jianmin Chai

Animal Science Faculty Publications and Presentations

Editorial on the Research Topic:

Respiratory microbiome in health and disease

Precipitation And Greenness In Pastoral Lands Of East Turkana, Kenya, Paul Akpejeluh

School of Natural Resources: Dissertations, Theses, and Student Research

Pastoralism has long supported livelihoods and provided essential ecosystem services in landscapes of East Africa. Vegetation productivity is central to the functioning of pastoral systems but may be affected by changes in climate and landuse. Vegetation monitoring is important for understanding the effects of global change in pastoral lands; however, it can be time and resource intensive. Remote sensing provides opportunities for efficient multi-scale monitoring of vegetation and climatic drivers. In this thesis, I explore the utility of satellite and UAV remote sensing for monitoring vegetation and precipitation trends and relationships in the East of Lake Turkana Region of northern …

Economic Equity And People With Disabilities: Development And Characterization Of A Novel Index, Bhavneet Walia, Katherine Mcdonald, Joy Hammel, Lex Frieden, Michael Morris, Barry Whaley, Vinh Nguyen

Faculty, Staff and Student Publications

Here we develop two new social indices: The ADA PARC Absolute Economic Opportunity Index and the ADA PARC Relative Economic Opportunity Index. These indices allow us novel examinations of economic equity between people with and without disabilities within a U.S. State and between people with disabilities in different states using aggregations of multiple component economic indicators. These represent the first efforts to offer U.S. indices of this focus, an important development given the distinct economic needs of people with disabilities and the value in accounting for distinct national policies. The indices rely on U.S. Census and other data on economic …

Neoadjuvant Durvalumab Alone Or Combined With Novel Immuno-Oncology Agents In Resectable Lung Cancer: The Phase Ii Neocoast Platform Trial, Tina Cascone, Gozde Kar, Jonathan D Spicer, Rosario García-Campelo, Walter Weder, Davey B Daniel, David R Spigel, Maen Hussein, Julien Mazieres, Julio Oliveira, Edwin H Yau, Alexander I Spira, Valsamo Anagnostou, Raymond Mager, Oday Hamid, Lin-Yang Cheng, Ying Zheng, Jorge Blando, Tze Heng Tan, Michael Surace, Jaime Rodriguez-Canales, Vancheswaran Gopalakrishnan, Bret R Sellman, Italia Grenga, Yee Soo-Hoo, Rakesh Kumar, Lara Mcgrath, Patrick M Forde

Faculty, Staff and Student Publications

Neoadjuvant chemoimmunotherapy improves pathologic complete response rate and event-free survival in patients with resectable non-small cell lung cancer (NSCLC) versus chemotherapy alone. NeoCOAST was the first randomized, multidrug platform trial to examine novel neoadjuvant immuno-oncology combinations for patients with resectable NSCLC, using major pathologic response (MPR) rate as the primary endpoint. Eighty-three patients received a single cycle of treatment: 26 received durvalumab (anti-PD-L1) monotherapy, 21 received durvalumab plus oleclumab (anti-CD73), 20 received durvalumab plus monalizumab (anti-NKG2A), and 16 received durvalumab plus danvatirsen (anti-STAT3 antisense oligonucleotide). MPR rates were higher for patients in the combination arms versus durvalumab alone. Safety profiles …

Wrack Lines Volume 23, No. 2, Fall-Winter 2023-2024, Syma A. Ebbin, Ralph Lewis, Judy Benson, Diana Payne, Miriah Russo Kelly

Wrack Lines

Learn about the inspiring journey of a mini sailboat, lessons from beaches and school aquariums and the unique geology of the Connecticut shoreline in the Fall-Winter 2023-2024 issue of Wrack Lines magazine. More good reading can be found in articles about how the ocean literacy campaign and ocean identity research are working to expand marine science education.

Titled, “Learning about the Sea: How it Becomes Real, Visible and Connecticut to Human Life,” the issue presents the diverse and exciting realm of marine science education, from international excursions to the geologic stories of our coast; from classrooms and beach field trips …

Agricultural Groundcover Update October 2023, Justin Laycock

Natural resources published reports

Summary

• About 98% of the grainbelt had adequate vegetative groundcover (more than 50%) to prevent wind erosion in October 2023. This amount of groundcover is normal at the end of spring and pre-harvest in most areas.
• There was a larger than average area with 51–60% groundcover, and groundcover in these areas is expected to reduce over summer to below 50%.
• About 2% of the grainbelt (293,000 ha) had less than 50% groundcover, which is inadequate to prevent wind erosion. Mullewa to Morawa Ag Soil Zone had the highest risk of wind erosion and 8% of this farmland had inadequate groundcover. …

Oritavancin Vs Standard Of Care For Treatment Of Nonendovascular Gram-Positive Bloodstream Infections, Ryan P Moenster, Ashleigh Wallace-Lacey, Hannah Western, Seth Tiefenaur, Anosha Abdulbasir, Justin Alberts, Jonathan Doty, Hartley Abner, Danielle Skouby, Michael Lorenz, Rebecca Fong, Jyoti Arora, Travis W Linneman

Faculty, Staff and Student Publications

BACKGROUND: Data is limited comparing oritavancin (ORT) to the standard-of-care (SOC) for the treatment gram-positive blood stream infections (BSI).

METHODS: This was a retrospective study of all patients in the Veteran's Affairs Health Care System treated with at least 1 dose of oritavancin or at least 5 days of vancomycin, daptomycin, ceftaroline, ampicillin, ampicillin-sulbactam, nafcillin, oxacillin, or cefazolin for a documented gram-positive BSI from 1 January 2015 to 30 June 2021. Patients with polymicrobial blood cultures or positive cultures from other sites were included if the organisms were sensitive to the incident antimicrobial; no concomitant antimicrobials could be used once …

Quercetin In Sports And Exercise: A Review, Jennifer Kurtz, Trisha Vandusseldorp, Jeff Otis

International Journal of Exercise Science

International Journal of Exercise Science 16(2): 1334-1384, 2023. This paper systematically reviews the latest evidence regarding Quercetin’s (Q) effect following exercise performance, aerobic and anaerobic exercise, muscle-damaging bouts and highlights blood biomarkers associated with muscle damage and recovery. Google Scholar, Web of Science, and MedLine (PubMed) searches were conducted through July- December 2021. Peer-reviewed studies that investigated Q as a single ingredient or in combination with other ingredients at dosages of 500 mg - 3000 mg, ranging from 15 min-to-1 h prior to exercise bout or chronic dose (7 days - 8 weeks) of consumption were included. A total of …

Habitat Use And Diet Composition Of The Common Eland (Tragelaphus Oryx) In Ngorongoro Conservation Area, Tanzania, Gregory A. Mtega, Cuthbert L. Nahonyo, Steven Temu, George Sangu, John Bukombe

Tanzania Journal of Science

Ngorongoro Conservation Area (NCA) is renowned worldwide for its multiple land use where pastoralism and wildlife conservation co-exist. Thus, the NCA must meet a delicate balance of competing needs between livestock and wildlife. Currently the NCA is  conducting resettlement program to facilitate pastoralists who are willing to move and resettle outside of the conservation area in order to reduce the number of people and livestocks in NCA. The common eland (Tragelaphus oryx) are among the large herbivore species found in the NCA that might be affected by possible competition between livestock and wildlife. The information on this species including habitat …

2023 Celebration Of Scholarship, Creativity, And Engagement, Todd Bruns, Diane Highland

Programs

Annually, Eastern Illinois University honors faculty achievements in the areas of research, creativity, and engagement. This year, the list of faculty accomplishments is again truly impressive, reflective of an engaged faculty committed to excellence and the ongoing pursuit and creation of knowledge. A number of these accomplishments occurred in collaboration with our students, who serve as co-authors, research assistants and partners in bringing these activities to fruition. Indeed, in some cases these professional ambitions transpired over the course of many years, and are a testament to persistence and tenacity--ensuring that these works extend to a broader community of scholars that …

Wics Conference 2023: Moving Beyond The Ordinary, Daren Redfearn, Daran Rudnick

Water and Integrated Cropping Systems Conferences

The theme of this year’s WICS Conference is Moving Beyond the Ordinary with the goal of addressing Team Science. Our vision is to provide opportunities and connection points among IANR faculty to leverage their individual knowledge, skills, abilities, and passions. A tendency for land grant institutions is often to deliver information biased from a single, primary discipline and perspective. This is known as comfort zone mega bias and has been defined as “the tendency to drag a problem into our comfort zone and solve the problem that we know how to solve, rather than solving the problem that needs to …

Crop Weed Infestation Forecasting Using Data Mining Methods, Kirill Maksimovich, Olga Alsova, Vladimir Kalichkin, Dmitry Fedorov

Turkish Journal of Agriculture and Forestry

No abstract provided.

Spatial Ecology Of The Texas Alligator Lizard (Gerrhonotus Infernalis) In Blanco County, Texas, Corey M. Fielder, Wade A. Ryberg, Danielle K. Walkup, Jared M. Holmes, Toby J. Hibbitts

Western North American Naturalist

Texas Alligator Lizards (Gerrhonotus infernalis) range from Central Texas into adjacent northeastern Mexico, and published ecological studies on their terrestrial and arboreal movement patterns are lacking. We used radiotelemetry to assess movements, annual home range, and arboreal activity of G. infernalis at Bamberger Ranch Preserve, Blanco County, Texas, to provide baseline ecological data for populations occurring in the northernmost extent of the species’ range. Movement patterns were influenced by temporal (e.g., seasonal) and behavioral cues (e.g., breeding period), but generally no differences were observed between sexes. Annual home range varied, but males averaged larger 95% MCP (minimum convex …

Potentially Adaptive Significance Of Genome Size Diversity Across Ecological Gradients And Seed Size In Ivesia (Rosaceae), Israel T. Borokini, Shaun R. Broderick, Zhi Gao, Joshua M. Hallas, James A. Birchler, Mary M. Peacock

Western North American Naturalist

Variation in genome size across taxa has been explained using neutral and nonadaptive theories; however, genome size variation among taxonomic groups can also be shaped by natural selection if it correlates with functional traits. This study investigated the potential adaptive significance of genome size in Ivesia, a radiating genus distributed in the western North American desert ecosystems. We estimated the genome size of 34 taxa (including 31 Ivesia taxa, 2 Potentilla taxa, and 1 Horkelia taxon) using flow cytometric methods. For each taxon, leaf samples were collected from 6 individuals in 1 location each; intraspecific genome size variation was …

Different Stages Of Urbanization Lead To Cropland Loss: Geospatial Data Analysis In A Global Rural-Urban Continuum Perspective, Xiyu Li, Le Yu

I-GUIDE Forum

Rapid urbanization has resulted in widespread loss of cropland, but the spatial-temporal patterns and key stages of this transformation have not been clearly understood. In this study, we mapped cropland loss caused by urban expansion in rural-urban continuum since 2000 based on multiple global land maps. Results show a total 3.35 × 10⁶ ha cropland loss resulting from urban expansion and about 70 % of this land use change occurred in Asia. However, there is a trend of reducing cropland loss area caused by urbanization over the years. In a detailed view of urbanization stages, most cropland losses occurred …