Digital Commons Network^™

A Deeper Meaning For Shallow-Level Phylogenomic Studies: Nested Anchored Hybrid Enrichment Offers Great Promise For Resolving The Tiger Moth Tree Of Life (Lepidoptera: Erebidae: Arctiinae), Nicolas J. Dowdy, Shannon Keating, Alan R. Lemmon, Emily M. Lemmon, William E. Conner, Clare H. Scott Chialvo, Susan Weller, Rebecca B. Simmons, Melissa S. Sisson, Jennifer M. Zaspel

Department of Entomology: Faculty Publications

Anchored hybrid enrichment (AHE) has emerged as a powerful tool for uncovering the evolutionary relationships within many taxonomic groups. AHE probe sets have been developed for a variety of insect groups, though none have yet been shown to be capable of simultaneously resolving deep and very shallow (e.g., intraspecific) divergences. In this study, we present NOC1, a new AHE probe set (730 loci) for Lepidoptera specialized for tiger moths and assess its ability to deliver phylogenetic utility at all taxonomic levels. We test the NOC1 probe set with 142 individuals from 116 species sampled from all the major lineages of …

Investigation Of An Elevational Gradient Reveals Strong Differences Between Bacterial And Eukaryotic Communities Coinhabiting Nepenthes Phytotelmata, Kadeem J. Gilbert, Leonora S. Bittleston, Mark Arcebal K. Naive, Anthony E. Kiszewski, Perry Archival C. Buenavente, David J. Lohman, Naomi E. Pierce

Publications and Research

Elevation is an important determinant of ecological community composition. It integrates several abiotic features and leads to strong, repeatable patterns of community structure, including changes in the abundance and richness of numerous taxa. However, the influence of elevational gradients on microbes is understudied relative to plants and animals. To compare the influence of elevation on multiple taxa simultaneously, we sampled phytotelm communities within a tropical pitcher plant (Nepenthes mindanaoensis) along a gradient from 400 to 1200 m a.s.l. We use a combination of metabarcoding and physical counts to assess diversity and richness of bacteria, micro-eukaryotes, and arthropods, and compare the …

What Smells? Developing In-Field Methods To Characterize The Chemical Composition Of Wild Mammalian Scent Cues, Cynthia Thompson, Kimberly N. Bottenberg, Andrew W. Lantz, Maria A B De Oliveira, Leonardo C O Melo, Christopher J. Vinyard

Peer Reviewed Articles

Olfactory cues play an important role in mammalian biology, but have been challenging to assess in the field. Current methods pose problematic issues with sample storage and transportation, limiting our ability to connect chemical variation in scents with relevant ecological and behavioral contexts. Real-time, in-field analysis via portable gas chromatography–mass spectrometry (GC-MS) has the potential to overcome these issues, but with trade-offs of reduced sensitivity and compound mass range. We field-tested the ability of portable GC-MS to support two representative applications of chemical ecology research with a wild arboreal primate, common marmoset monkeys (Callithrix jacchus). We developed methods …

Changes In Reef Fish Community Structure Following The Deepwater Horizon Oil Spill, Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David D. Chagaris, William F. Patterson Iii

C-IMAGE Publications

Large-scale anthropogenic disturbances can have direct and indirect effects on marine communities, with direct effects often taking the form of widespread injury or mortality and indirect effects manifesting as changes in food web structure. Here, we report a time series that captures both direct and indirect effects of the Deepwater Horizon Oil Spill (DWH) on northern Gulf of Mexico (nGoM) reef fish communities. We observed significant changes in community structure immediately following the DWH, with a 38% decline in species richness and 26% decline in Shannon-Weiner diversity. Initial shifts were driven by widespread declines across a range of trophic guilds, …

Impacts Of Commercial Biopesticides On Crapemyrtle Bark Scale (Acanthococcus Lagerstroemiae) And Beneficial Insects, Giovana Matos Franco

LSU Master's Theses

The crapemyrtle bark scale (CMBS), Acanthococcus lagerstroemiae (Kuwana) (Hemiptera: Eriococcidae), is an important pest of crapemyrtles, Lagerstromia spp. (Myrtales: Lythraceae) since its damage results in an unpleasant aesthetic. Current CMBS management methods depend heavily on pesticides which impact on beneficial insects. Biopesticides show potential for pest control, host specificity, and low impact towards non-target organisms. The objectives of my thesis were to determine (1) if biopesticides are effective against CMBS infestations when applied in different seasons, and (2) their effects towards coccinellids known to attack CMBS.

To test the efficacy of selected biopesticides, treatments were delivered to potted plants or …

Grassland Management In Wildlife Protected Areas (Pa's) In India, R. K. Pandey

IGC Proceedings (1977-2023)

Ecological status of Indian grasslands had been a subject of conflicting opinion in the past. Existing grasslands are anthropogenic in origin except, Himalayan meadows in high altitudes. Extensive clearing of the forests for human settlements, agricultural cultivation and domestication of animals in the past have been resulted into opening of pockets/grasslands amidst the forest areas. Such tame grasslands are categorized as succession or rotational grasslands. There are four categories of PAs viz., National parks, wildlife sanctuaries, conservation reserves and community reserves. Thus, 683 PAs (102 national parks, 551 wildlife sanctuaries, 47 conservation reserves and 04 community reserves) spread over …

Applications Of Unmanned Aerial Vehicles For Conducting Mesocarnivore And Breeding Waterfowl Surveys In Southern Manitoba, Jacob Bushaw

LSU Master's Theses

Unmanned aerial vehicles (UAVs) are becoming an increasingly important tool for wildlife surveys and equipping UAVs with thermal imaging cameras could make these surveys even more effective. In my thesis I examined the feasibility of using a UAV equipped with a thermal imaging camera to conduct mesocarnivore surveys, search for duck nests built over water, and conduct duck brood surveys in southern Manitoba.

For my first objective, I conducted nighttime mesocarnivore surveys with the UAV and thermal camera. I used a modified point-count survey from six waypoints and surveyed 29.5 ha in each replicate. I conducted a total of 200 …

Soil Sample Timing, Nitrogen Fertilization, And Incubation Length Influence Anaerobic Potentially Mineralizable Nitrogen, Jason Clark, Kristen S. Veum, Fabian G. Fernandez, Newell R. Kitchen, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Carrie A.M. Laboski, Emerson D. Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Agronomy, Horticulture and Plant Science Faculty Publications

Understanding the variables that affect the anaerobic potentially mineralizable N (PMNan) test should lead to a standard procedure of sample collection and incubation length, improving PMNan as a tool in corn (Zea mays L.) N management. We evaluated the effect of soil sample timing (preplant and V5 corn development stage [V5]), N fertilization (0 and 180 kg ha−1) and incubation length (7, 14, and 28 d) on PMNan (0–30 cm) across a range of soil properties and weather conditions. Soil sample timing, N fertilization, and incubation length affected PMNan differently based on soil and weather conditions. Preplant vs. V5 PMNan …

Preliminary Microbiome Analysis Of Freshwater Bivalves From Turnbull National Wildlife Refuge, Dechen Edwards

2020 Symposium Posters

Eukaryotic hosts and their associated microbes exhibit variable relationships. Some are driven by well-documented benefits including microbial contributions to host digestion; others are less understood. In this project, we seek to understand how a host’s microbiome is differentiated from the surrounding, free-living microbial community and whether this process is altered by the presence of pollution. Here we present a protocol developed for the extraction, isolation, and identification of the microbial population found in freshwater “fingernail” clams (Sphaeriidae) based on modified methods from the Earth Microbiome Project and studies of freshwater amphibian and marine bivalve microbiomes. We first developed …

Wpa News 111 (2020), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Spring 2020), number 111

Published by the World Pheasant Association

An Apex Predator In Peril In The Western Lowlands Of Ecuador: Mapping The Population Distribution Of Harpy Eagles (Harpia Harpyja) In A Highly Deforested Region, Samuel Zhang

Independent Study Project (ISP) Collection

The Harpy Eagle (Harpia harpyja) is a highly threatened bird of prey in Ecuador. While they are already elusive in the Ecuadorian Amazon, they are even lesser known in the coastal lowlands, and their existence is threatened by rapid deforestation. This study mapped their potential distribution by examining satellite images to find intact humid forest, their ideal habitat. Habitat areas were quantified using ImageJ. The only sites found to be adequate for sustaining Harpy Eagle populations were the primary forests in the vicinities of Reserva Ecológica Mache Chindul and Reserva Ecológica Cotacachi Cayapas. The two reserves are expected to be …

Ecological And Economic Benefits And Risks Of Using Botanical Insecticides In Tanzanian Farms, Lilia Garcia

Independent Study Project (ISP) Collection

Insect damage is a major concern for smallholder farmers in developing countries like Tanzania. Synthetic insecticides can tame infestations, however they can be expensive, inaccessible, and their misuse can threaten farmer health and ecological conditions. Botanical insecticides are cheap alternatives to treat infestations while preserving beneficial insects such as pollinators, predators, and parasitoids. This study assesses how both synthetic and botanical insecticides affect beneficial insects, crop yield and profit/costs. This study finds botanical insecticides slightly less harmful towards non-target insects. Botanical insecticides seldomly improve crop yields but usually result in a higher profit/lower cost. Due to high variation in ecological …

Integrating The Ecosystem Services Framework To Define Dysbiosis Of The Breastfed Infant Gut: The Role Of B. Infantis And Human Milk Oligosaccharides, Rebbeca M. Duar, Bethany M. Henrick, Giorgio Casaburi, Steven A. Frese

Department of Food Science and Technology: Faculty Publications

Mounting evidence supports a connection between the composition of the infant gut microbiome and long-term health. In fact, aberrant microbiome compositions during key developmental windows in early life are associated with increased disease risk; therefore, making pertinent modifications to the microbiome during infancy offers significant promise to improve human health. There is growing support for integrating the concept of ecosystem services (the provision of benefits from ecosystems to humans) in linking specific microbiome functions to human well-being. This framework is widely applied in conservation efforts of macro-ecosystems and offers a systematic approach to guide restoration actions aimed to recover critical …

Insect Diversity And Association With Plants: A Case Study In Rural Areas Of Dhirkot, Azad Kashmir Pakistan, Abu Ul Hassan Faiz, Mehboob Ul Hassan, Mikhail F. Bagaturov, Majid Mahmood, Ghazal Tariq, Lariab Zahra Faiz

Journal of Bioresource Management

Insects play a vital role for proper functioning of forest ecosystem, including positive roles as pollinators, seed dispersers, genetic linkers and detrimental effects by feeding on and/or killing trees. The present study was conducted to find insect association with plants in rural areas of Dhirkot. The study was conducted from March, 2019 to September, 2019. The sampling was carried out by line transect method. Thirty transects were taken for sampling insects. Sixty-five species of insects in association with 150 plants were recorded.

Diversity And Ethnobotanical Importance Of Pine Species From Sub-Tropical Forests, Azad Jammu And Kashmir, Kishwar Sultana, Sher Wali Khan, Safdar Ali Shah

Journal of Bioresource Management

A general investigation of sub-tropical forests, from Pir Chinasi National Park, Tolipir National Park, Dhirkot Nature Reserve and Banjosa Game Reserve was carried out during different months from February 2008 to May 2010. The relative abundance of species was calculated using line transects of 50m. A total of five different species (Abies pindrow. Cedrus deodara, Pinus wallichiana, Pinus roxburgii and Picea smithiana) from the Pinaceae family were recorded. The main reported use of Cedrus deodara and Pinus wallichiana by the local people was for furniture and construction purposes. Pinus wallichiana was observed as the dominant …

Density And Aboriginal Uses Of Wild Tree Species In Milawilila Forest Reserve In Morogoro Region, Tanzania, David Sylvester Kacholi

Tanzania Journal of Science

This study assessed density and local uses of wild tree species in Milawilila forest reserve, Morogoro rural district. A total of six transects were set in the forest for assessing density and diversity of trees. In each transect, three plots of 20 m x 20 m were established and all trees with Diameter at Breast Height (DBH) ≥ 10 cm were identified, counted and DBH recorded in each plot. A semi structured questionnaire was used to obtain data on the use of tree species by the locals. Data were analyzed using Microsoft Excel and Statistical Package for Social Science software. …

Steppes And Grasslands In Morocco: Diversity, Functional Ecology And Socio-Economic Role, Mohammed Sghir Taleb, Jalal El Oualidi

IGC Proceedings (1977-2023)

With Morocco’s geographical situation (at the crossroads between Europe and Africa, the Mediterranean Sea and the Atlantic Ocean), its diverse climate and habitats supports a varied natural vegetation. The floristic richness of the country is related to the heterogeneity of biotypes. From the desert to the high mountains and the littoral to the continental borders, Morocco offers varied ecological conditions that support many different plant species. Steppes and grasslands are important parts of the main plant associations encountered in Morocco. They contain a wealth of flora, play important ecological roles and, from a socioeconomic perspective, are highly significant.

Weather And Exposure Period Affect Coyote Detection At Camera Traps, Anastasia E. Madsen, Lucia Corral Hurtado, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Abstract Camera traps are an increasingly popular means to monitor wildlife populations. However, like other techniques for measuring populations, camera traps are subject to sources of error that may bias population estimates. Past studies accounting for detection error have failed to account for a simple but potentially widely pervasive source of environmental error: weather conditions. Using 5,108,416 photographs from 804 scent‐lured camera traps deployed in western Nebraska, USA, during spring and autumn of 2014 and 2015, we analyzed the relationship between weather conditions (barometric pressure, wind speed, precipitation, and temperature) and coyote (Canis latrans) detection probability. Using binomial …

Taxonomy And Systematics Of The New Zealand Pselaphini (Coleoptera: Staphylinidae: Pselaphinae), Brittany Elin Owens

LSU Doctoral Dissertations

The New Zealand (NZ) Pselaphini was revised at the species level, a phylogenetic analysis was performed using morphological data, and first steps were taken towards the construction of a molecular analysis of the tribe. Eight new genera and 33 new species were discovered from specimens collected from the NZ mainland, offshore islands, Chatham Islands and the Subantarctic Islands. Of the 13 species originally described in the genus Pselaphus by Thomas Broun during the late 19^th and early 20^th centuries, all were either reassigned to the genera Pselaphaulax and Pselaphogenius, or were placed into new genera. Three names …

Improving Grassland Quality In Communal Arable Lands In The Eastern Cape Province, South Africa, Theunis L. Morgenthal, Pieter W. Conradie, Gideon Jordaan, Unathi Gulwa, Neil Ballard, John Howieson

IGC Proceedings (1977-2023)

Overgrazing and shifting cultivation practise have severely degraded communal lands in the Eastern Cape of South Africa. Methods need to be developed to improve forage quality of grazing land, especially previously cultivated lands. The aim of the study was to investigate legume species to rehabilitate arable lands abandoned from cropping, to enhance their forage quality, productivity and ecological integrity. The study was conducted in seven communities within the Eastern Cape Province. This study showed that within the communal lands studied extensive areas have been cultivated and the majority of this land is now poorly utilised. Natural grasslands ploughed for cropping …

Modelling The Effects Of Climatic Factors On The Biomass And Rodent Distribution In A Tibetan Grassland Region In China, Quanzhen Wang, Maolin Xia, Bai-Song, Xi-Rao-Zhuo-Ma, Ba-Sang, Jiang- Cuo, Zha-Dui, Jin-Mei, Ze-Duo, Surong Li, Zha-Xi, Yang-Ba, Jia-Yang, Dan-Pei, Jian Cui, Jimin Cheng

IGC Proceedings (1977-2023)

To identify the main climatic factors from 2007 to 2009 that influence biomass and rodent distribution, 576 fixed sample plots within 81 million km² of different climatic grassland in Tibet were monitored. The aboveground biomass, the total burrows, the active burrows, the burrow index, and the rodent density in the plots were measured yearly in October. The monthly precipitation and the average temperatures from April to November were obtained for four successive years (2006-2009). Correlative and modelling analyses between the aboveground biomass, the rodent density, and the climatic factors were performed. The results showed that biomass and rodent density …

Sandhill Crane Abundance In Nebraska During Spring Migration: Making Sense Of Multiple Data Points, Andrew J. Caven, Dana M. Varner, Jeff Drahota

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The USFWS conducts an annual one-day aerial survey of the North and Central Platte River Valleys, generally on the fourth Tuesday in March, to estimate the abundance of the midcontinent Sandhill Crane population. However, these abundance indices demonstrate unrealistic inter-annual variation as a result of deviations in migration chronology and other factors. Additional research efforts have been undertaken within the region to estimate Sandhill Crane abundance over time and space but these projects generally seek to answer unique questions, employ differing survey methods, and cover overlapping yet distinct survey areas. Despite the wealth of information there remains significant uncertainty regarding …

Nutrient Composition And Flux In A Semi-Arid Grazing Land Of Southern India, K. Karunaichamy, K. Paliwal

IGC Proceedings (1977-2023)

The distribution and cycling of minerals in various compartments of the ecosystem form one of the important aspects of ecosystem study. The uptake of nutrients through the root system and their release via litter and root decomposition depends upon a number of factors including the species, growth and stage of maturity. The semi-arid grazing land ecosystem at Madurai has developed under short evolutionary grazing histories and low moisture regimes, in which grazing pressure has had dramatic effects on the plant community and biomass (Karunaichamy 1992). The biological cycle includes circulation of nutrients between soil and biotic communities by the phenomena …

Reproductive Ecology Of Dragonfishes (Stomiiformes: Stomiidae) In The Gulf Of Mexico, Alex Marks, David Kerstetter, David Wyanski, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The most abundant fishes on Earth live in the meso- and bathypelagic (deep-pelagic, collectively) zones of the open ocean, where they play a key role in deep-sea food webs by mediating energy flow from surface waters to great depth. Of these fishes, the most speciose taxon is the family Stomiidae (dragonfishes). Despite being the numerically dominant predators of the global mesopelagic zone, stomiid reproductive ecology is poorly known. Research surveys rarely catch larger adults, impeding reproductive ecology studies. Between 2010 and 2011, the Offshore Nekton Sampling and Analysis Program sampled the Gulf of Mexico using a research-sized, opening/closing trawl (10-m …

Evolutionary Traits That Enable Scleractinian Corals To Survive Mass Extinction Events, Gal Dishon, Michal Grossowicz, Michael Krom, Gilad Guy, David F. Gruber, Dan Tchernov

Publications and Research

Scleractinian “stony” corals are major habitat engineers, whose skeletons form the framework for the highly diverse, yet increasingly threatened, coral reef ecosystem. Fossil coral skeletons also present a rich record that enables paleontological analysis of coral origins, tracing them back to the Triassic (~241 Myr). While numerous invertebrate lineages were eradicated at the last major mass extinction boundary, the Cretaceous-Tertiary/K-T (66 Myr), a number of Scleractinian corals survived. We review this history and assess traits correlated with K-T mass extinction survival. Disaster-related “survival” traits that emerged from our analysis are: (1) deep water residing (>100 m); (2) cosmopolitan distributions, …

The Gut Microbiota Of A Wild American Black Bear (Ursus Americanus) Population, Sierra Gillman

All NMU Master's Theses

The gut microbiome (GMB), the mutualistic microbial communities located in the gastrointestinal tract (GIT), has co-evolved in vertebrates to perform micro-ecosystem services to facilitate physiological functions. Despite the key role of the GMB in host health, wildlife managers have been slow to consider the ramifications of anthropogenic pressures to wildlife-GMB diversity. For example, although diet is one of the most influential determinants of a host’s GMB, many wildlife agencies allow baiting with human-provisioned foods to facilitate the harvest of wildlife such as American black bear (Ursus americanus). Additionally, much of our knowledge of wildlife-GMB relationships is based on …

Characterization And Mapping Of Halophyte Vegetation Using Gis And Remote Sensing Technique In Kachchh Plane Of Gujarat, India, J. P. Singh, D. Deb, R. Srinivasan, R. S. Chaurasia, Archana Singh, Ashwini Kumar, M. Shamsudheen

IGC Proceedings (1977-2023)

One of the pressures of a burgeoning population is need to increase agricultural production through both irrigated agriculture and the development of land that was previously regarded as marginal. About 8.56 m ha land in India is affected by salt. Out of this, about 1.2 m ha land is in Gujarat which is next to Uttar Pradesh (1.295 m ha). Kachchh, the second largest district of the country, has more than 53% of the total geographical area under Ranns (salt-marshy lands). The soil salinity in this region ranges from 3.2 to 32 EC and sodicity from 8.0 to 10.0 pH. …

Surveillance Of Culex And Aedes Mosquitoes In Lincoln, Lancaster County, Nebraska, William Noundou

Department of Entomology: Dissertations, Theses, and Student Research

In 2018, West Nile virus (WNV) was identified as the leading cause of mosquito-borne disease in the continental United States. In response to this very serious problem, the Lincoln-Lancaster County Public Health Department (LLCHD) reinforced their mosquito surveillance program, which constitutes one of the best available tools to fight against this serious threat to human health. The objectives of this study were to 1) expand knowledge of the activity and relative abundance of mosquito communities in understudied areas and 2) evaluate differences in mosquito communities by urban and rural location, especially focusing on known vector species. A total of 6 …

Live Specimens Of The Parasite Petrarca Madreporae (Crustacea: Ascothoracida) From The Deep-Water Coral Madrepora Oculata In Japan, With Remarks On The Development Of Its Spectacular Galls, Hiroyuki Tachikawa, Mark J. Grygier, Stephen D. Cairns

Journal of Marine Science and Technology–Taiwan

Grossly enlarged corallites, which had earlier been interpreted as tumors, epibionts, or parasitic galls, on colonies of deep-sea scleractinians of the genus Madrepora from various Indo-Pacific localities, were recognized as galls in 1996 by Grygier and Cairns on account of the new species of ascothoracidan crustacean, Petrarca madreporae Grygier, they had found inside enlarged corallites from a site in Indonesia. Here we report the confirmatory recovery of living specimens of P. madreporae from an enlarged corallite of a possibly undescribed variant of Madrepora oculata Linnaeus in Japan. Two affected coral colonies were taken by fishermen off Katsuura, Chiba Prefecture, at …

Role Of Fires, Herbicides And Fertilizer In Manipulating Shrub/Grass Balance In Mediterranean Grasslands, Zalmen Henkin

IGC Proceedings (1977-2023)

The decline of traditional pastoral systems has highlighted the problem of managing shrub encroachment in shrublands of the Mediterranean region, especially in marginal habitats. Ephemeral grasslands appear after fire in Mediterranean shrub communities on phosphorus-deficient soils, but natural successional processes rapidly led to their dominance. In a study, aimed at reducing the rate of successional change and extending the period of grassland dominance, phosphorus was applied after fire to improve herbaceous growth and two years later the regenerating Sarcopoterium spinosum shrubs were controlled with selective herbicide. Subsequently, the vegetation in the treated areas was monitored for more than 20 consecutive …