Digital Commons Network^™

Avian Species Distribution Models: Using Location Data To Inform Management Decisions, Marilyn E. Wright

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Both state and federal wildlife agencies strive to conserve and protect wildlife and their habitats as an important public resource. Applied management decisions often rely on being able to obtain data that can efficiently and effectively enhance the understanding of these systems for informing management actions. Wildlife managers often focus efforts on a small subset of species from an ecosystem, typically called focal species, who can serve as surrogates for understanding the health and function of the system. Models that consider how these focal species interact with the ecosystem are often used to better understand important aspects of their life …

Analysis Of Ecological Tradeoffs Between Congeneric Shrimp In Coastal Mississippi Waters, Baylor K. Lynch

Honors Theses

Palaemonidae is an ecologically important and abundant family of shrimp that link the benthos to many estuarine food webs. Palaemon pugio and Palaemon vulgaris regularly co-occur along estuarine edge habitats despite previous studies suggesting different preferred sediment types and salinity regimes. The objective was to determine if competition is occurring between the congeners by comparing their relative abundance and assessing isotope niche space along an estuarine gradient. I seasonally sampled various edge habitats at four sites throughout Biloxi Bay, MS, using fyke nets fished over a tidal cycle from November 2020 to November 2021. Collected organisms were identified to the …

Ectotherm Thermoregulation At Fine Scales: Novel Methods Reveal A Link Between The Spatial Distribution Of Temperature And Habitat Quality, Ian Axsom

Master's Theses

Investigating ecological questions at the scale of individual organisms is necessary to understand and predict the biological consequences of environmental conditions. For small organisms this can be challenging because we need tools with the appropriate accuracy and resolution to record and quantify their ecological interactions. Unfortunately, many of our existing tools are only appropriate for medium to large organisms or those that are wide ranging, inhibiting our ability to investigate the ecology of small organisms at fine scales.

In Chapter 1, I tested a novel workflow for recording animal movements at very fine spatial and temporal scales. The workflow combined …

Landscape Genomics Of The Tussock Cottongrass (Eriophorum Vaginatum) And The Dwarf Birch (Betula Nana) In North Central Alaska, Elizabeth Stunz

Open Access Theses & Dissertations

Global climate change has resulted in geographic range shifts of flora and fauna at a global scale. Extreme environments, like the Arctic, are seeing some of the most pronounced changes. This region covers 14% of the Earthâ??s land area, and while many arctic species are widespread, understanding ecotypic variation at the genomic level will be important for elucidating how range shifts will affect ecological processes. Increase in shrub cover is a major effect of ongoing climate change in arctic tundra ecosystems. The relative increases in abundance and cover of shrub species such as birch, willow, and alder (Betula, Salix, and …

Biology And Epidemiology Of Dengue Viruses In The El Paso And The Surrounding Usa And Mexico Border Communities, Pedro Miguel Palermo Infante

Open Access Theses & Dissertations

Dengue is considered one of the most important human arboviral diseases worldwide. Dengue cases have increased in the last three decades in the Americas, especially along the United States (US)- Mexico (MX) border region, where the main vector of dengue, Aedes aegypti mosquito, is widely distributed. Explosive outbreaks of dengue in northern Mexico have been associated with imported and local transmission of dengue in the US border communities, especially in the Southeast Texas area, also known as Rio Grande Valley. Due to the unknown if dengue virus (DENV) is present in other areas in the US border located west of …

Application Of Stable Isotopes To Study Movement Ecology And Diet Variation In A Migratory Songbird, Andrea Contina, Allison K. Pierce, Scott W. Yanco, Eli S. Bridge, Jeffrey F. Kelly, Michael B. Wunder

School of Integrative Biological & Chemical Sciences Faculty Publications

Whether and how migratory organisms exhibit interindividual behavioral and/or physiological variation across movement strategies remains an open question. The Dark-eyed Junco (Junco hyemalis) is a migratory songbird known for its intraspecies variation displayed in relation to morphology, song repertoires, and migration. Thus, studies focusing on juncos can reveal how migratory strategy may covary with other individual-scale factors and, therefore, identify the selective forces driving intraspecies variations throughout its distribution. We used Dark-eyed Junco hydrogen stable isotope feather values (δ²H) and implemented a Bayesian framework to infer the breeding and molting origin of migratory juncos captured on their winter grounds in …

Population Demography, Spatial Ecology, And Habitat Use Of The Florida Box Turtle (Terrapene Bauri) On A Barrier Island, Michael D. Mills

USF Tampa Graduate Theses and Dissertations

Turtles are one the most threatened vertebrate groups in the world due to anthropogenic threats such as habitat loss and overexploitation. In addition to occupying a range that has been vulnerable to major habitat loss, the Florida box turtle (Terrapene bauri) is particularly at risk of overexploitation due to its popularity in the pet trade. Sanibel Island is a barrier island in southwest Florida that has experienced major habitat loss and is the site of a recent poaching event. In response to these threats, studies of both the population demography and spatial ecology were conducted on Sanibel’s Florida box turtle …

An Assessment Of Future Tidal Marsh Resilience In The San Francisco Estuary Through Modeling And Quantifiable Metrics Of Sustainability, James T. Morris, Judith Z. Drexler, Lydia J.S. Vaughn, April H. Robinson

Faculty Publications

Quantitative, broadly applicable metrics of resilience are needed to effectively manage tidal marshes into the future. Here we quantified three metrics of temporal marsh resilience: time to marsh drowning, time to marsh tipping point, and the probability of a regime shift, defined as the conditional probability of a transition to an alternative super-optimal, suboptimal, or drowned state. We used organic matter content (loss on ignition, LOI) and peat age combined with the Coastal Wetland Equilibrium Model (CWEM) to track wetland development and resilience under different sea-level rise scenarios in the Sacramento-San Joaquin Delta (Delta) of California. A 100-year hindcast of …

Visualization Of Lamb Adulteration Based On Hyperspectral Imaging For Non-Destructive Quantitative Detection, Zhao Jing-Yuan, Zhang Jun-Qin, Sun Mei, Chen Xing-Hai, Liu Ye-Lin

Food and Machinery

Objective: This study aimed to establisha rapid and accurate prediction method of lamb adulteration by using visible/near-infrared (400~1 000 nm) and short-wave near-infrared (900~1 700 nm) hyperspectral imaging techniques.Methods: The data acquisition of lamb adulterated with different proportions of duck meat using visible/near-infrared (400~1 000 nm) and short-wave near-infrared (900~1 700 nm) hyperspectral imagers was performed to compare the effect of partial least squares (PLS) modeling with different spectral preprocessing methods in the two band ranges. Then the normalized preprocessing method was selected in the visible-NIR band, and the standard normal variate transformation (SNV) preprocessing method was …

Collective Dynamics Support Group Drumming, Reduce Variability, And Stabilize Tempo Drift, Dobromir Dotov, Lana Delasanta, Daniel J. Cameron, Edward W. Large, Laurel Trainor

Journal Articles

Humans are social animals who engage in a variety of collective activities requiring coordinated action. Among these, music is a defining and ancient aspect of human sociality. Human social interaction has largely been addressed in dyadic paradigms, and it is yet to be determined whether the ensuing conclusions generalize to larger groups. Studied more extensively in non-human animal behavior, the presence of multiple agents engaged in the same task space creates different constraints and possibilities than in simpler dyadic interactions. We addressed whether collective dynamics play a role in human circle drumming. The task was to synchronize in a group …

Combining Isotopic And Genetic Analyses To Quantify Microbial Facilitation Of Recalcitrant Resource Use By Terrestrial And Aquatic Consumers, Alexi Christina Besser

Biology ETDs

Quantifying the flow of energy and nutrients through food webs is foundational to understanding the structure and function of ecosystems. Here, I utilize the stable carbon and nitrogen isotope analysis of individual amino acids to trace the movement of essential amino acids through terrestrial and freshwater food webs in New Mexico, USA. I first explore isotopic patterns among co-occurring terrestrial plants and aquatic algae. I then combine this molecular isotopic approach with 16S and 18S rRNA sequencing to demonstrate the importance of gut microbiota as sources of essential amino acids to wild mammalian hosts. Next, I explore the roles of …

County-Level Societal Predictors Of Covid-19 Cases And Deaths Changed Through Time In The United States: A Longitudinal Ecological Study, Philip J. Bergmann, Nathan A. Ahlgren, Rosalie A. Torres Stone

Biology

People of different racial/ethnic backgrounds, demographics, health, and socioeconomic characteristics have experienced disproportionate rates of infection and death due to COVID-19. This study tests if and how county-level rates of infection and death have changed in relation to societal county characteristics through time as the pandemic progressed. This longitudinal study sampled monthly county-level COVID-19 case and death data per 100,000 residents from April 2020 to March 2022, and studied the relationships of these variables with racial/ethnic, demographic, health, and socioeconomic characteristics for 3125 or 97.0% of U.S. counties, accounting for 96.4% of the U.S. population. The association of all county-level …

Viewing Animal Migration Through A Social Lens, Ellen O. Aikens, Iris D. Bontekoe, Lara Blumenstiel, Anna Schlicksupp, Andrea Flick

Natural Resource Management Faculty Publications

Evidence of social learning is growing across the animal kingdom. Researchers have long hypothesized that social interactions play a key role in many animal migrations, but strong empirical support is scarce except in a few unique systems and species. In this review, we aim to catalyze advances in the study of social migrations by synthesizing research across disciplines and providing a framework for understanding when, how, and why social influences shape the decisions animals make during migration. Integrating research across the fields of social learning and migration ecology will advance our understanding of the complex behavioral phenomena of animal migration …

Design And Assessment Of A Novel Edna Survey Method For The Eastern Indigo Snake (Drymarchon Couperi), Emily K. Galbraith

USF Tampa Graduate Theses and Dissertations

1. Accurate information about species range declines is the cornerstone of effective conservation when habitat loss drives biodiversity loss. The Eastern Indigo snake (Drymarchon couperi) is an apex predator in Florida and, like many other native Florida species, is threatened by widespread habitat destruction. Environmental DNA (eDNA) monitoring of this elusive snake would provide a low-risk and low-cost approach to expand our knowledge of the species’ range and distribution.

2. We designed and tested an eDNA assay that can detect the presence of Eastern Indigo snake from soil samples of their natural habitat. This assay was …

A Spectral Three-Dimensional Color Space Model Of Tree Crown Health, William B. Monahan, Colton E. Arnspiger, Parth Bhatt, Zhongming An, Frank J. Krist, Tao Liu, Robert P. Richard, Curtis Edson, Robert E. Froese, John Steffenson, Tony C. Lammers, Randy Frosh

Michigan Tech Publications, Part 1

Protecting the future of forests in the United States and other countries depends in part on our ability to monitor and map forest health conditions in a timely fashion to facilitate management of emerging threats and disturbances over a multitude of spatial scales. Remote sensing data and technologies have contributed to our ability to meet these needs, but existing methods relying on supervised classification are often limited to specific areas by the availability of imagery or training data, as well as model transferability. Scaling up and operationalizing these methods for general broadscale monitoring and mapping may be promoted by using …

Spatial Variation In Hard Bottom Coral Communities Of The Coastal West Florida Shelf, Nicole Blank, Sandra D. Brooke, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Hard bottom coral and sponge communities differ along portions of the West Florida Shelf (WFS) in species occurrence, diversity, and/or size. However, the composition and spatial distribution of these communities are not well understood. Community transitions have been proposed in the central portion of the WFS around Tampa Bay, Cedar Key, and as far south as Charlotte Harbor, but supporting data are sparse. Fifteen sites in three regions of Florida were surveyed for species distribution, density, and demographics. Distinct communities were found between St Teresa, Hudson, and Tarpon Springs. Coral and sponge densities were highest off Tarpon Springs followed by …

Afforestation And Biodiversity: Bryophyte Richness Changes Between Icelandic Forest Types, Kian Mcdonough

Independent Study Project (ISP) Collection

Forest-dwelling bryophytes (mosses, liverworts, hornworts) greatly contribute to biodiversity and ecosystem function but are largely under-studied in comparison to vascular plants. With Iceland’s large-scale afforestation efforts there is a need to understand how different afforestation species are affecting biodiversity, including bryophyte diversity. This study looked at differences in ground-floor bryophyte richness across Sitka spruce, lodgepole pine, and downy birch forests and found that bryophyte richness was highest in the Sitka spruce forests and lowest in downy birch forests. While this suggests a negative correlation between bryophyte richness and light availability, since the conifer species have the densest copy cover, other …

Filamentous Green Algae (Cladophora Glomerata) In Near Shore Lake Ontario: An Investigation Of Tissue And Water Nutrient Dynamics Through A Period Of Growth And Decomposition., James L. Wagner Jr

Biology Theses

Cladophora glomerata, a filamentous green alga abundant in the Laurentian Great Lakes, has long been considered a nuisance throughout the region. Previous phosphorus (P) abatement practices and legislation successfully reduced the abundance of the algae, but with the introduction of dreissenid mussels, a resurgence has been observed. Though there is substantial literature and modeling of the growth cycle of Cladophora, relatively little research has been dedicated to the decomposition stage of the algae, a period which may contribute to a substantial influx of nutrients to near-shore environmental regions. By first examining a period of in-situ growth within Lake …

Investigations Into The Negative Impact Of Temperature Stress On Fertility In Wild Strains Of Caenorhabditis Elegans, Nicholas B. Sepulveda

Dissertations (1934 -)

Sexual reproduction and its coincident genetic recombination are powerful adaptive strategies. However, sexual reproduction has disadvantages. One ancient and conserved disadvantage is temperature sensitivity. In organisms diverse as plants, insects, nematode worms, and humans, as temperatures increase, fertility decreases. The goal of this dissertation is to examine the negative impact of elevated temperature stress on fertility in sexually reproducing organisms using wild strains of Caenorhabditis elegans. C. elegans presents a unique opportunity to study these effects broadly in two contexts, as worms may be either self-fertile hermaphrodites that produce both egg and sperm or males which produce only sperm. In …

Importance And Winter Ornithological Value Of Lake El-Golea (Ghardaïa, Algerian Sahara, Biad Radhia, Bounab Choayb, Guergueb El Yamine, Biad Mohamed Fetheddine, Houhamdi Moussa

Journal of Bioresource Management

This study is carried out on two winter period (2018-2019 and 2019-2020) in Lake El-Golea (Ghardaïa, northern Sahara of Algeria). Its objective is to determine the ornithological value of this lake and to in ferits importance in maintaining aquatic avifauna during the winter season. This inventory shows a diversity equivalent to forty-one species belonging to thirteen families and nine orders of which eighteen are protected by various Algerian and international laws. The most represented family is that of the Anatidae with twelve species while the family with the highest number is that of the Phenicopteridae represented only by one species, …

Biodiversity Of Culicidae (Insecta: Diptera) In The Region Of Khenchela (Northeast Algeria), Imane Halimi, Fatima Zohra Zohra Kara-Toumi, Salim Lebbal, Ruben Bueno Mari, Asma Ghorab, Fairouz Saidi

Journal of Bioresource Management

Mosquitoes are considered as vectors of serious human diseases. The prevention of parasitic and arboviral vector-borne diseases is based mostly on vector control strategies. This control cannot be effective unless a strong knowledge of mosquito biology and distribution in the working area. In this context, and in order to improve the knowledge on the specific diversity of the culicids fauna in the region of Khenchela (northeast of Algeria), an inventory of mosquitoes was carried out for the first time in this region. Larval collection was conducted in various types of habitats through continuous monitoring of seven sites from May 2020 …

Next-Generation Technologies Unlock New Possibilities To Track Rangeland Productivity And Quantify Multi-Scale Conservation Outcomes, Caleb P. Roberts, David E. Naugle, Brady W. Allred, Victoria M. Donovan, Dillon T. Fogarty, Matthew O. Jones, Jeremy D. Maestas, Andrew C. Olsen, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Historically, relying on plot-level inventories impeded our ability to quantify large-scale change in plant biomass, a key indicator of conservation practice outcomes in rangeland systems. Recent technological advances enable assessment at scales appropriate to inform management by providing spatially comprehensive estimates of productivity that are partitioned by plant functional group across all contiguous US rangelands. We partnered with the Sage Grouse and Lesser Prairie-Chicken Initiatives and the Nebraska Natural Legacy Project to demonstrate the ability of these new datasets to quantify multi-scale changes and heterogeneity in plant biomass following mechanical tree removal, prescribed fire, and prescribed grazing. In Oregon’s sagebrush …

Poster Session, Kentucky Water Research Institute

Kentucky Water Resources Annual Symposium

• Evaluating the Effects of Beaver Dam Removal on the Hydrology, Water Quality, and Bioindicators of a Restored Wetland
• Predictive Sediment Flux Modeling of a Karst Spring Using High Resolution Sensors and Stable Carbon and Nitrogen Isotopes
• Development and Validation of qPCR Assays for Use in eDNA Detection of Four Species of Semiaquatic Salamanders .
• Analyzing Recent Spatio-Temporal Rainfall Erosivity Patterns and Trends Across Kentucky
• Development of eDNA Protocols for Detection of Four Darter (Percidae: Etheostomatinae) Species in Central Kentucky Streams
• Assessing Change in the Seasonality of Stable Isotopes δ18O and δ2H for Meteoric and Terrestrial Waters of Central Kentucky
• Coupling …

Montezuma Quail In The Edwards Plateau Of Texas: Detection, Occurrence, And Habitat, Zachary J. Pearson, Eric D. Grahmann, Fidel Hernández, Robert Perez, Leonard A. Brennan, Humberto L. Perotto-Baldivieso

National Quail Symposium Proceedings

Montezuma quail (Cyrtonyx montezumae) were historically found throughout nearly every county in the Edwards Plateau region of Texas, USA. Over the last century, shifting land use, reduction of fire on the landscape, and the subsequent encroachment of woody vegetation have constricted the distribution of Montezuma quail to a few counties in the southern portion of the Edwards Plateau. A renewed interest in management for Montezuma quail over the last decade has been met with a lack of information regarding their habitat requirements in this region. This lack of general information and increased sightings of this elusive species in …

Effect Of Food Distribution On Northern Bobwhite Resource Selection, Rachel R. Gardner, John Maerz, Theron M. Terhune Ii, Ira B. Parnell, James A. Martin

National Quail Symposium Proceedings

Supplemental feeding is a common management tactic used to increase survival and reproduction of northern bobwhite (Colinus virginianus; hereafter, bobwhite). Different supplemental feeding methods alter the distribution of resources across a landscape in unique ways and may influence the space use and resource selection of target species differently. Predators may concentrate their movements near fed sites, and different distributions of supplemental feed may encourage bobwhite to concentrate their movements closer to feed than other areas, thereby altering the potential for predator-prey interactions near feed. We used radio-tracked locations and movements in areas with stationary feeders (“feeder fed”) and …

Phylogenetic Diversity Of Animal Oral And Gastrointestinal Viromes Useful In Surveillance Of Zoonoses, Anthony Michael Esposito, Michelle Marie Esposito, Albert Ptashnik

Publications and Research

Great emphasis has been placed on bacterial microbiomes in human and animal systems. In recent years, advances in metagenomics have allowed for the detection and characterization of more and more native viral particles also residing in these organisms. The digestive tracts of animals and humans—from the oral cavity, to the gut, to fecal excretions—have become one such area of interest. Next-generation sequencing and bioinformatic analyses have uncovered vast phylogenetic virome diversity in companion animals, such as dogs and cats, as well as farm animals and wildlife such as bats. Zoonotic and arthropod-borne illnesses remain major causes of worldwide outbreaks, as …

Spatial Analysis Of Seven Islands In Indonesia To Determine Stunting Hotspots, Tiopan Sipahutar, Tris Eryando, Meiwita Budiharsana

Kesmas

Indonesia is a vast country struggling to reduce its stunting prevalence. Hence, identifying priority areas is urgent. In determining areas to prioritize, one needs to consider geographical issues, particularly correlations among areas. This study aimed to discover whether stunting prevalence in Indonesia occurs randomly or in clusters; and, if it occurs in clusters, which areas are the hotspots. This ecological study used aggregate data from the 2018 National Basic Health Research and Poverty Data and Information Report from the Statistics Indonesia. This study analyzed 514 districts/cities across 34 provinces on seven main islands in Indonesia. The method used was the …

Niche Overlap In Sympatric Rocio (Teleostei: Cichlidae) Of Guatemala, Cesar Estuardo Fuentes Montejo

College of Science and Health Theses and Dissertations

Rocio is a small genus of Neotropical freshwater fishes that is distributed in Atlantic drainages of northern Middle America. Two species in the genus exhibit sympatry in the Río Dulce basin (in Izabal, Guatemala), where one species is endemic (R. spinosissima), while the other only includes this area as part of a larger geographic range (R. octofasciata). Unfortunately, the ecology of these species has been poorly studied. This study sought to determine the ecological and morphological differences between these two closely related sympatric freshwater fishes. We hypothesized that R. octofasciata would exhibit greater ecological and morphological …

Prevalence Of Mortality Among Covid-19 Patients In Kurdistan Region And Various Parts Of The World And The Role Of Ecological And Environmental Factors In Shaping Sars-Cov-2 Virulence, Muayad A. Mahmud

Polytechnic Journal

Evolutionary theories predict that virulence (host death due to a pathogen) positively associates with the pathogen transmission rates to new susceptible hosts. Severe acute respiratory syndrome coronavirus 2 (SARS- CoV-2), the causative agent of coronavirus disease 2019 (covid-19) pandemic, like other RNA viruses, has quite variable genetic content due to its unique nucleus enzymes thus mutations can continuously occur during viral replications. Phenotype variations among new viral progeny can include individuals with different replication rates, infectivity, stability in the abiotic environment, and transmission rate. Here, the rate of transmission to new susceptible hosts may be affected by the pathogen’s vitality …

Planttracker: An R Package To Translate Maps Of Plant Occurrence Into Demographic Data, Alice E. Stears, Peter B. Adler, Shannon E. Albeke, David H. Atkins, Jared Studyvin, Daniel C. Laughlin

Wildland Resources Faculty Publications

1. Long-term demographic data are rare yet invaluable for conservation, management, and basic research on the underlying mechanisms of population and community dynamics. Historical and contemporary mapped datasets of plant location and basal area present a relatively untapped source of demographic records that, in some cases, span over 20 years of sequential data collection. However, these maps do not uniquely mark individual plants, making the process of collecting growth, survival, and recruitment data difficult.
2. Recent efforts to translate historical maps of plant occurrence into shapefiles make it possible to use computer algorithms to track individuals through time and determine individual growth …