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Ecological Genomics: Understanding Gene And Genome Function In The Natural Environment, M. C. Ungerer, L. C. Johnson, M. A. Herman

School of Biological Sciences: Faculty Publications

The field of ecological genomics seeks to understand the genetic mechanisms underlying responses of organisms to their natural environments. This is being achieved through the application of functional genomic approaches to identify and characterize genes with ecological and evolutionary relevance. By its very nature, ecological genomics is an interdisciplinary field. In this review, we consider the significance of this new area of study from both an ecological and genomic perspective using examples from the recent literature. We submit that by considering more fully an ecological context, researchers may gain additional insights into the underlying genetic basis of ecologically relevant phenotypic …

Parasite Pathoecology Of Salmon Pueblo And Other Chacoan Great Houses: The Healthiest And Wormiest Ancestral Puebloans, Karl Reinhard

Karl Reinhard Publications

Two fields of paleopathological investigation originated in the Southwest. Archaeoparasitology is the study of ancient parasite infection (Reinhard 1990, 1992b). It includes comparisons between time periods of single societies as well as comparisons of parasitism between different, contemporaneous cultures. For example, Fry (1980) compared Fremont and Anasazi parasitism, and also Archaic hunter-gatherer and ancestral Pueblo parasitism. All of these studies fall into the definition of archaeoparasitology.

By contrast, pathoecology is the reconstruction of relationships among behavior, environment, and disease organisms in the development of illness (Martinson et al. 2003; ReinhardandBuikstra2003; Reinhardet al. 2003; Santoro et al. 2003).1his field developed from …

Geographic Patterns Of At-Risk Species, Curtis H. Flather, Michael S. Knowles, Jason Mcnees

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

This technical document supports the Forest Service’s requirement to assess the status of renewable natural resources as mandated by the Forest and Rangeland Renewable Resources Planning Act of 1974. It updates past reports on the trends and geographic patterns of species formally listed as threatened or endangered under the Endangered Species Act of 1973. We compare the geographic occupancy of threatened and endangered species at the county-level against the geographic occupancy of a broader set of species thought to be at risk of extinction. This is done to determine if new areas where species rarity may be concentrated emerge. Here …

Waterhole Dynamics And Chemical Signals Of African Elephants ( Loxodonta Africana ), Stacie Marie Castelda

College of Graduate Studies: Theses & Dissertations

The distribution of mammals in a savanna environment is influenced by abiotic and biotic factors. The African savanna experiences distinct wet and dry seasons. Species become spatially restricted around water resources during the dry season, resulting in increased intraspecies and interspecies resource-based aggregation. A dominate species, such as the African elephant (Loxodonta africana), may influence this aggregation. I examined the influence of wet and dry seasons and ambient temperature on the use of a waterhole by elephants as well as the co-occurrence of elephants and other mammals at the waterhole. Biodiversity scans (October 2004-June 2007) and were performed at a …

Chapter 15. Proven Practices And Innovative Technologies For On-Farm Crop Nitrogen Management, N. R. Kitchen, K. W. T. Goulding, J.F. Shanahan

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Nitrogen (N) from soil, fertilizer, and manure sources is generally inefficiently used (30-60%) in most crop production systems. As a consequence, unused inorganic N can move off crop fields and contaminate surface and groundwater resources. Local and national governments have responded with guidelines, standards, regulations, and in some cases fines when off-field losses of N have not been reduced. Along with these environmental pressures, soaring energy costs have resulted in commensurate increased costs for N fertilizers. These factors are real for crop producers and are compelling them to scrutinize their crop N management more closely than in previous decades. Numerous …

Evaluating Forest Harvesting To Reduce Its Hydrologic Impact With A Spatial Decision Support System, Yanli Zhang, P. K. Barten, Ramanathan Sugumaran

Faculty Publications

Timber harvesting changes the condition of forest ecosystems, which are a major influence on the characteristics of headwater streams. Such characteristics include the quantity and timing of base flow and storm flow, concentrations of sediment and dissolved nutrients, water temperature, and the stability of the stream channels. This paper explores previous studies dealing with the relationship between timber harvesting and its hydrologic effects, especially long term water yield increase. The watershed disturbance threshold theory is raised and investigated in detail. The development and evaluation of a spatial decision support system, the Harvest Schedule Review System (HSRS), is then described. The …

Perspectives In Ornithology: Application Of Tracking And Data-Logging Technology In Research And Conservation Of Seabirds, A E. Burger, Scott A. Shaffer

Faculty Publications, Biological Sciences

No abstract provided.

Diet Of Western Slimy Salamander, Plethodon Albagula (Caudata: Plethodontidae), From Two Mountain Ranges In Arkansas, Joseph Milanovich, Stanley E. Trauth, Tanja Mckay

Biology: Faculty Publications and Other Works

We identified stomach contents of 80 Plethodon albagula (Western Slimy Salamander) from two mountain ranges in Arkansas (Ozark and Ouachita) to examine if regional differences in diet occur. Museum specimens from 1985 to 2005 were used from locations throughout each mountain range. Although a wide variety of prey were found in stomachs, Hymenoptera: Formicidae and Coleoptera: Carabidae were found to be the most important food items in the diet of P. albagula. Ants and beetles constituted 85% abundance of their total diet (79.6% Ozark and 90.1% Ouachita) and 52.2% of their total biomass (42.6% Ozark and 64.1% Ouachita). Seventy-eight and …

Introduction To Ecological Landscaping: A Holistic Description And Framework To Guide The Study And Management Of Urban Landscape Parcels, Loren B. Byrne, Parwinder Grewal

Arts & Sciences Faculty Publications

Urbanized ecosystems and urban human populations are expanding around the world causing many negative environmental effects. A challenge for achieving sustainable urban social ecological systems is understanding how urbanized landscapes can be designed and managed to minimize negative outcomes. To this end, an interdisciplinary Ecological Landscaping conference was organized to examine the interacting sociocultural and ecological causes and consequences of landscaping practices and products. This special issue of Cities and the Environment contains a diverse set of articles arising from that conference. In this introductory paper, we describe the meaning of ecological landscaping and a new conceptual framework that helps …

Wolf Body Mass Cline Across Minnesota Related To Taxonomy?, L. David Mech, William J. Paul

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Recent genetic studies suggest that in northern Minnesota two species of wolves (Canis lupus L., 1758 or western wolf and Canis lycaon Schreber, 1775 (= Canis rufus Audubon and Bachman, 1851) or eastern wolf) meet and hybridize. However, little morphological information is available about these two types of wolves in Minnesota. We analyzed the mass of 950 female wolves and 1006 males older than 1 year from across northern Minnesota and found that it increased from 26.30 ± 0.56 kg (mean ± SE) for females and 30.60 ± 0.72 kg for males in northeastern Minnesota to 30.01 ± 0.43 …

A Landscape Perspective In Managing Vegetation For Beneficial Plant-Pestnatural Enemy Interactions: A Foundation For Areawide Pest Management, Michael J. Brewer, Takuji Noma, Norman C. Elliott

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

In the USA, Europe and increasingly in other regions, cropping systems designed for high production output are significant features of the landscape. Deployment of mechanized and high-input cropping systems over the last 50 years has resulted in substantial transformation and fragmentation of major grassland, shrubland and woodland systems throughout the world. These cropping systems are typically less diverse in species composition, structure and ecological functioning than those found in the original plant community (Altieri, 2004). Decreases in plant diversity of agroecosystems (i.e. the crops themselves and surrounding remnants of the original plant system) have negatively affected ecosystem functions (Freemark, 2005). …

A Dgge-Cloning Method To Characterize Arbuscular Mycorrhizal Community Structure In Soil, Zhanbei Liang, Rhae A. Drijber, Donald J. Lee, Ismail M. Dwiekat, Steven D. Harris, David A. Wedin

Department of Plant Pathology: Faculty Publications

Although arbuscular mycorrhizal fungi (AMF) are crucial for ecosystem functioning, characterizing AMF community structure in soil is challenging. In this study, nested polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE) were combined with cloning of fungal 18S ribosomal gene fragments for the rapid comparison of AMF community structure in soil. Reference AMF isolates, representing four major genera of AMF, were used to develop the method. Sequential amplification of 18S rDNA fragments by nested PCR using primer pairs AM1-NS31 and Glo1-NS31GC followed by DGGE analysis yielded a high-resolution band profile. In parallel, 18S rDNA fragment clone libraries were constructed …

Salt Marshes As A Source Of Chromophoric Dissolved Organic Matter (Cdom) To Southern California Coastal Waters, Catherine D. Clark, Liannea P. Litz, Stanley B. Grant

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

To determine chromophoric dissolved organic matter (CDOM) sources in Southern California coastal waters, optical properties of a river outlet and adjacent tidally flushed salt marshes were monitored (dry season; June July 2001). Average absorption coefficients doubled at ebb vs. flood tides (4.8 +/- 1.5 vs. 2.1 +/- 0.9 m(-1); 300 nm), suggesting significant salt marsh CDOM inputs into coastal waters. Average spectral slopes were not statistically different for any sites or tides (0.010 +/- 0.002 nm(-1)), consistent with salt marsh CDOM dominating coastal waters. Three-dimensional fluorescence excitation-emission matrices (EEMs) at ebb tide showed contributions from terrestrial, protein, and marine humic-like …

Impact Of Small Scale Gold Mining On Soils Of The Wetland Forests In East Usambara, Tanzania, C. Kweyunga, R. B. M. Rbm Senzota

Tanzania Journal of Science

Soil pits in disturbed and natural wetland forests of East Usambara were excavated and soil profile samples collected and analysed for physical and chemical properties. Their physical and chemical characteristics were found to be sharply different from those of the surrounding hills. Differences included lack of A Horizon, water saturation, presence of very high organic matter, very low pH and hence very poor in basic cations, and low microbial activity. Nutrient recycling, especially nitrogen and phosphorus, tended to shift from mineralization to immobilization. Effects of soil disturbance on both physical and chemical characteristics of the soils were also very vivid. …

The Isolation And Characterization Of The Microbial Flora In The Alimentary Canal Of Gromphadorhina Portentosa Based On Rdna Sequences., Amy Renee Robertson

Electronic Theses and Dissertations

Multicellular organisms are not single individuals but carry a complex natural microflora with them. This complex's diversity and function can be considered a distinct ecosystem. Traditional methods of isolation and identification miss >90% of the actual diversity. This study uses the gut microflora of the Madagascar hissing roach, Gromphadorhina portentosa, as a model to examine this ecosystem. Isolated cultured bacteria were used to establish methods for identifying members of the microflora based on ribosomal RNA sequences. Universal primers for Eubacterial, Archaeal, and Eukaryotic 16s/18s rRNA were then used for PCR amplification of total DNA isolated from gut contents. Sequences …

Neochetina Species And Arthropod Communities In Water-Hyacinth Rafts In South Carolina, Benjamin Powell

All Theses

Arthropod communities inhabiting feral water-hyacinth rafts were surveyed monthly in South Carolina's Coastal Plain from March 2005 through February 2006. Special attention was given to the chevroned waterhyacinth weevil [Neochetina bruchi (Hustache)], the mottled waterhyacinth weevil [N. eichhorniae (Warner)] (both Coleoptera: Curculionidae), and the waterhyacinth moth [Niphograpta albiguttalis (Warren)] (Lepidoptera: Crambidae), which were imported into North America to control water-hyacinth. Communities of arthropods are compared among sites, flow regimes (lentic, lotic, and tidal), and months of the year. The arthropod communities in waterhyacinth rafts in South Carolina are more diverse than previously reported. Rafts in each of …

Enhancing The Ability Of Panicum Virgatum To Survive Flooding And Its Effects On Soil Activity When Used For Lakeshore Stabilization, Lee Edwards

All Dissertations

Reservoirs in upstate South Carolina are subject to erosion and vegetation has been placed to help stabilize banks, but soils are nutrient-poor and have high bulk densities. Panicum virgatum L. (switchgrass) has been planted in several sites, and it is hypothesized that over time, changes in microbial activity and soil quality will occur in response to the planting. As vegetated sites aged, acid phosphomonoesterase, nitrate reductase, and dehydrogenase activity increased. Low values of nitrogen fixation and substrate-induced respiration were measured at all sites with no statistical differences between sites. Fatty acids indicative of Gram negative bacteria were found in vegetated …

Correlation Between Boldness And Body Mass In Natural Populations Of The Poeciliid Brachyrhaphis Episcopi, C. Brown, F. Jones, V. Braithwaite

Sentience Collection

The boldness of individual Brachyrhaphis episcopi, collected from regions of high and low predation, was investigated using two independent assays: (1) the time to emerge from cover and (2) the propensity to leave shoal mates and investigate a novel object. A strong correlation between the two assays was revealed such that fish that emerged from shelter sooner were also more likely to approach a novel object. This is indicative of a boldness personality axis acting across both behavioural contexts. Fish from high-predation areas were bolder than those from low-predation areas and males were bolder than females. A significant correlation between …

Phenotypic Plasticity Of Reproduction In Schizachyrium Scoparium (Poaceae) Populations In Relation To Ecological History, Elizabeth M. Obee, James A. Quinn

Aliso: A Journal of Systematic and Floristic Botany

Genetic differentiation in reproduction in the wide-ranging Schizachyrium scoparium (Poaceae) has been demonstrated in uniform gardens. However, the fine-tuning of flowering phenology and biomass allocation in relation to spatial and temporal fluctuations in the local environment is best accomplished by plastic responses to local variability. An earlier central New Jersey study suggested that S. scoparium populations in old fields of 2 to 40 years differed in plasticity. To test this apparent effect of ecological history on the development of different levels of plasticity, genotypes were collected from high- and low-fertility sites in New Jersey (forest biome) and in Oklahoma (grassland …

Species Invasion Shifts The Importance Of Predator Dependence, Blaine D. Griffen, David G. Delaney

Faculty Publications

The strength of interference between foraging individuals can influence per capita consumption rates, with important consequences for predator and prey populations and system stability. Here we demonstrate how the replacement of a previously established invader, the predatory crab Carcinus maenas, by the recently invading predatory crab Hemigrapsus sanguineus shifts predation from a species that experiences strong predator interference (strong predator dependence) to one that experiences weak predator interference (weak predator dependence). We demonstrate using field experiments that differences in the strength of predator dependence persist for these species both when they forage on a single focal prey species only (the …

Spatial Ecology Of The Desert Tortoise: Sampling Frequency And Biological Influences, Meagan L. Harless

Loma Linda University Electronic Theses, Dissertations & Projects

Understanding the spatial ecology of an animal is crucial for making positive efforts to provide for its recovery. As a part of this understanding, home range estimates are used to answer a variety of questions in ecological studies. However, home range estimates based on a collection of radio-telemetry locations are sensitive to methodological variables, such as sample size, sampling frequency, and the choice of estimator. Further confounding these estimates are a number of physical, social, and ecological factors. Identifying the main determinants of space use patterns by a species may aid conservation efforts.

The Desert Tortoise (Gopherus agassizii)of the …

New And Emended Descriptions Of Gregarines From Flour Beetles (Tribolium Spp. And Palorus Subdepressus: Coleoptera, Tenebrionidae), John J. Janovy Jr., Jillian Tikka Detwiler, Samana Schwank, Matthew G. Bolek, Alaine Knipes, Gabriel J. Langford

John J. Janovy, Jr. Publications

The following new gregarine taxa are described from larvae of flour beetles (Coleoptera: Tenebrionidae): Awrygregarina billmani, n. gen., n. sp., from Tribolium brevicornis; Gregarina cloptoni, n. sp., from Tribolium freemani; Gregarina confusa, n. sp., from Tribolilum confusum; and Gregarina palori, n. sp., from Palorus subdepressus. In addition, the description of Gregarina minuta Ishii, 1914, from Tribolium castaneum, is emended. Scanning electron micrograph studies of these species’ oocysts reveal differences in surface architecture. The Gregarina species have oocysts with longitudinal ridges, visible with SEM, whereas Awrygregarina billmani oocysts have fine circumferential striations; …

Bats Of Barbuda, Northern Lesser Antilles, Scott C. Pedersen, Peter A. Larsen, Hugh H. Genoways, Matthew Morton, Kevel C. Lindsay, Jerry Cindric

University of Nebraska State Museum: Mammalogy Papers

Five species of bats are known to occur on the Lesser Antillean island of Barbuda—Noctilio leporinus, Monophyllus plethodon, Brachyphylla cavernarum, Tadarida brasiliensis, and Molossus molossus. During the present study, two additional species of bats—Artibeus jamaicensis and Natalus stramineus—were added to the chiropteran fauna of the island. Although the ecological diversity of Barbuda is limited, this bat fauna matches those of islands in the region such as Antigua, Nevis, and St. Kitts. It is proposed that this biodiversity of bats is maintained because of the geology of Barbuda provides ample roosting sites and access to freshwater …

Animal Minds, Cognitive Ethology, And Ethics, Colin Allen, Marc Bekoff

Sentience Collection

Our goal in this paper is to provide enough of an account of the origins of cognitive ethology and the controversy surrounding it to help ethicists to gauge for themselves how to balance skepticism and credulity about animal minds when communicating with scientists. We believe that ethicists’ arguments would benefit from better understanding of the historical roots of ongoing controversies. It is not appropriate to treat some widely reported results in animal cognition as if their interpretations are a matter of scientific consensus. It is especially important to understand why loose references to ‘‘cognitive ethology’’ by philosophers can signal ignorance …

Genetic Evidence For The Persistence Of The Critically Endangered Sierra Nevada Red Fox In California, John D. Perrine, John P. Pollinger, Benjamin N. Sacks, Reginald H. Barrett, Robert K. Wayne

Biological Sciences

California is home to both the native state-threatened Sierra Nevada red fox (Vulpes vulpes necator), which historically inhabited high elevations of the Sierra Nevada and Cascade mountains, and to multiple low-elevation red fox populations thought to be of exotic origin. During the past few decades the lowland populations have dramatically expanded their distribution, and possibly moved into the historic range of the native high-elevation fox. To determine whether the native red fox persists in its historic range in California, we compared mitochondrial cytochrome-b haplotypes of the only currently-known high-elevation population (n = 9 individuals) to samples …

Differential Resource Allocation In Deer Mice Exposed To Sin Nombre Virus, Eric Wilson, Erin M. Lehmer, Christine A. Clay, Stephen St. Jeor, Denise M. Dearing

Faculty Publications

The resource allocation hypothesis predicts that reproductive activity suppresses immunocompetence; however, this has never been tested in an endemic disease system with free-ranging mammals. We tested the resource allocation hypothesis in wild deer mice (Peromyscus maniculatus) with natural exposure to Sin Nombre Virus (SNV). Immunocompetence was estimated from the extent of swelling elicited after deer mice were injected with phytohemagglutinin (PHA); swelling is positively correlated with immunocompetence. After livetrapping deer mice, we determined their reproductive state and SNV infection status. Males were more likely to be seropositive for SNV than females (37% vs. 25%) and exhibited 10% less swelling after …