Digital Commons Network^™

Human Impact On Atolls Leads To Coral Loss And Community Homogenisation: A Modeling Study, Bernhard Riegl, Charles R. C. Sheppard, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

We explore impacts on pristine atolls subjected to anthropogenic near-field (human habitation) and far-field (climate and environmental change) pressure. Using literature data of human impacts on reefs, we parameterize forecast models to evaluate trajectories in coral cover under impact scenarios that primarily act via recruitment and increased mortality of larger corals. From surveys across the Chagos, we investigate the regeneration dynamics of coral populations distant from human habitation after natural disturbances. Using a size-based mathematical model based on a time-series of coral community and population data from 1999–2006, we provide hind- and forecast data for coral population dynamics within lagoons …

Evolution Of A Sexually Dimorphic Trait In A Broadly Distributed Topminnow (Fundulus Olivaceus), Jacob F. Schaefer, David D. Duvernell, Brian R. Kreiser, Charles Champagne, Scott R. Clark, Melissa Gutierrez, Laura K. Stewart, Chazz Coleman

Biological Sciences Faculty Research & Creative Works

Understanding the interaction between sexual and natural selection within variable environments is crucial to our understanding of evolutionary processes. The handicap principle predicts females will prefer males with exaggerated traits provided those traits are indicators of male quality to ensure direct or indirect female benefits. Spatial variability in ecological factors is expected to alter the balance between sexual and natural selection that defines the evolution of such traits. Male and female blackspotted topminnows (Fundulidae: Fundulus olivaceus) display prominent black dorsolateral spots that are variable in number across its broad range. We investigated variability in spot phenotypes at 117 sites …

Using High Throughput Sequencing To Explore The Biodiversity In Oral Bacterial Communities, Patricia I. Diaz, A. K. Dupuy, L. Abusleme, B. Reese, C. Obergfell, Linda E. Choquette, Anna Dongari-Bagtzoglou, Douglas E. Peterson, Linda D. Strausbaugh

UCHC Articles - Research

High throughput sequencing of 16S ribosomal RNA gene amplicons is a cost-effective method for characterization of oral bacterial communities. However, before undertaking large-scale studies, it is necessary to understand the technique-associated limitations and intrinsic variability of the oral ecosystem. In this work we evaluated bias in species representation using an in vitro-assembled mock community of oral bacteria. We then characterized the bacterial communities in saliva and buccal mucosa of five healthy subjects to investigate the power of high throughput sequencing in revealing their diversity and biogeography patterns. Mock community analysis showed primer and DNA isolation biases and an overestimation …

Five New Records Of Ants (Hymenoptera: Formicidae) For Nebraska, Kristine T. Nemec, James C. Trager, Elizabeth Manley, Craig R. Allen

The Prairie Naturalist

Ants are ubiquitous and influential organisms in terrestrial ecosystems. About 1,000 ant species occur in North America, where they are found in nearly every habitat (Fisher and Cover 2007). Ants are critical to ecological processes and structure. Ants affect soils via tunneling activity (Baxter and Hole 1967), disperse plant seeds (Lengyel et al. 2009), prey upon a variety of insects and other invertebrates (Way and Khoo 1992, Folgarait 1998), are often effective primary consumers through their prodigious consumption of floral and especially extrafloral nectar, and honeydew (Tobin 1994), and serve as prey for invertebrates (Gotelli 1996, Gastreich 1999) and vertebrates …

Seasonal Food Habits Of Burrowing Owls (Athene Cunicularia) In Human-Altered Landscapes, Carie Marie Wingert

Master's Theses

In 2004, I initiated a year-long study to investigate the food habits of burrowing owls (Athene cunicularia). Burrowing owls have been found in a variety of human-altered landscapes; however, little is known about burrowing owl food habits in urban landscapes. Burrowing owl food habits during the non-breeding season are also largely undocumented, despite increasing concern over the survival of overwintering burrowing owls. Differences in prey consumption between reproductive and non-reproductive owls during the breeding season have not yet been examined. I collected pellets over a 12 month period at four study sites affected by different levels of human …

Spatial Ecology Of Urban Raccoons In Northeastern Ohio: Implications For Oral Rabies Vaccination, Are R. Berentsen, Mike R. Dunbar, Chadd E. Fitzpatrick, W. David Walter

The Prairie Naturalist

In 1977, rabies was detected in a raccoon (Procyon lotor) in West Virginia, and since the mid-1980s raccoon variant rabies has spread throughout the eastern United States and moved west as far as the eastern edge of Cleveland, Ohio. The primary tool to combat this spread is the distribution of oral rabies vaccine (ORV) baits. A thorough knowledge of raccoon space use is critical in determining bait placement, particularly in urban areas. We monitored nine raccoons in urban areas of Cleveland, Ohio, calculated home range sizes, monitored raccoon movement with respect to potential movement barriers, and used resource selection functions …

Macrophyte Communities Of Lake Winnebago: Baseline Study Of Species Composition With Abundances And Water Quality Conditions, Mackenzie Kessenich

Lawrence University Honors Projects

Historical records from Lake Winnebago show minimal macrophyte growth; however, reports from recent years claim that macrophyte growth in some areas of the lake has reached nuisance levels. This study aimed to investigate the species of macrophytes present and their abundances in four near-shore locations, as well as measurements of multiple water quality conditions. Rake sampling was used to identify species and quantify their abundances and distributions. In addition, data were collected on light penetration, Secchi depths, and suspended algae chlorophyll concentrations at each site. These data from shallow near-shore sites reveal trends in changing water clarity and light penetration …

Teaching Old Buildings New Tricks: Benefits Of Retrofitting Indianapolis Buildings With Green Roofs, Sarah Elizabeth Strobl

Undergraduate Honors Thesis Collection

Not your basic rooftop garden, green roofs contain growing media and are planted with various types of vegetation. Green roofs can be either intensive, with soil depths above 6 inches and increased size and attractiveness of vegetation, such as trees and shrubs, or extensive, with soil depths between 2-6 inches and low, moss or grass-like plants that require little care (Getter et al. 2009, Indianapolis DPW 2008, Obemdorfer et al. 2007, US DOE 2004).

Although green roofs are initially more expensive than traditional roofing techniques due to the cost of additional materials, the long-term cost savings are high and can …

Effectiveness Of Marine Protected Areas Across A Latitudinal Gradient, Chelsea Roy

Honors Scholar Theses

Use of marine protected areas (MPA) as a tool for conservation and sustainable use of marine biological diversity is increasing worldwide. However, the geographic extent of MPA designation varies, as does a full understanding of the ecological utility of such designations. Progress towards marine conservation goals needs to be evaluated in order to determine areas lacking effective MPA designation. The goal of this study is to evaluate the representation (in terms of communities and habitats) and performance of marine protected areas in the Northwestern Atlantic and Northeastern Pacific across a latitudinal gradient. Presence or absence of MPAs in specific ecological …

Host Specificity Of Ecuadorian Bat Flies (Diptera: Streblidae), Eric Stamper

Mahurin Honors College Capstone Experience/Thesis Projects

Diptera: Streblidae are ectoparasites of bat populations found in many locations throughout the world. These ectoparasites are generally known as bat flies. They attach themselves to the wing membranes and bodies of bats to bite and feed on their blood. Using a large sample consisting of over 2,000 bats and 6,000 bat flies, I have conducted a study of the degree of host specificity of these ectoparasites. Host specificity is a measurement of the degree to which a particular parasite is restricted to its host or hosts. Here I find evidence to support more recent findings that bat flies are …

Drag Reduction In Wave-Swept Macroalgae: Alternative Strategies And New Predictions, Patrick T. Martone, Laurie Kost, Michael L. Boller

Biology Faculty/Staff Publications

Premise of the study: Intertidal macroalgae must resist extreme hydrodynamic forces imposed by crashing waves. How does frond flexibility mitigate drag, and how does flexibility affect predictions of drag and dislodgement in the field? Methods: We characterized flexible reconfiguration of six seaweed species in a recirculating water flume, documenting both shape change and area reduction as fronds reorient. We then used a high-speed gravity-accelerated water flume to test our ability to predict drag under waves based on extrapolations of drag recorded at slower speeds. We compared dislodgement forces to drag forces predicted from slow- and high-speed data to generate new …

Effects Of Cache Valley Particulate Matter On Human Lung Cells, Todd L. Watterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During the wintertime, residents of the Cache Valley are very aware of the poor air quality that occurs during cold-air inversion episodes. If one somehow avoids the radio and television announcements as well as the electronic roadside signs indicating poor air quality and encouraging less driving, one need only to look upward toward the mountains that surround the valley and notice the lack of daytime visibility. This lack of visibility and health warnings are due to particulate air pollution or particulate matter (PM). PM is only one of many types of regulated air pollution but is the one that occurs …

Developing A High Throughput Protocol For Using Soil Molecular Biology As Trace Evidence, Sabreena A. Larson

Department of Biochemistry: Dissertations, Theses, and Student Research

The use of soil as trace evidence has changed significantly with the addition of new techniques. These techniques include using the biochemical molecules from soil microbial communities to make a fingerprint of the specific soil. This research examines the changes to the microbial community profile that take place during storage of a soil sample. To observe such changes both the DNA and fatty acid profiles will be examined.

The DNA profiles were made with capillary electrophoresis-single stranded conformation polymorphism (CE-SSCP). After statistical analysis using Bray-Curtis distances and ANOSIM (analysis of similarity) it was shown that storage of soil does not …

Stable Isotope Analysis (Delta Nitrogen-15 And Delta Carbon-13) And Bioenergetic Modeling Of Spatial-Temporal Foraging Patterns And Consumption Dynamics In Brown And Rainbow Trout Populations Within Catch-And-Release Areas Of Arkansas Tailwaters, Jon M. Flinders

Graduate Theses and Dissertations

I examined spatial and temporal consumption dynamics using an energy intake model and a bioenergetics model of rainbow trout, Oncorhynchus mykiss, and brown trout, Salmo trutta, within three catch-and-release (C-R) areas in Bull Shoals and Norfork tailwaters to determine whether trout populations were limited by food supply. I also examined the seasonal and ontogenetic shifts in the foraging patterns of brown and rainbow trout within these areas using gut content analysis (GCA) and stable isotope analysis (SIA) of C and N. I examined 605 brown trout and 768 rainbow trout for GCA and SIA at Bull Shoals, Norfork, …

Influence Of Substrate And Hydraulic Variables On Habitat Preferences Of A Sculptured And An Unsculptured Freshwater Mussel, Daniel Goodding

Biology Theses

Freshwater mussels of the family Unionidae in North America have been in decline for at least the past 150 years. Major causes behind the decline are thought to be related to alteration or loss of habitat. Recent efforts by researchers have focused on understanding habitat associations of mussels so that more effective conservation efforts can be applied. Recent studies have identified variables that limit mussel community distributions. These variables are a combination of substrate and hydraulic variables that are associated with substrate stability. Furthermore, recent studies have suggested mussel studies are most informative at larger spatial scales and at high …

Transmission Of Triticum Mosaic Virus And Its Impact On The Biology Of The Wheat Curl Mite Aceria Tosichella Keifer (Eriophyidae), And An Evaluation Of Management Tactics For The Wheat Curl Mite And The Wheat–Mite–Virus Complex, Anthony J. Mcmechan

Department of Entomology: Dissertations, Theses, and Student Research

The wheat-mite-virus complex is an important production constraint to winter wheat production in the Great Plains, and consists of three viruses; wheat streak mosaic (WSMV), wheat mosaic (WMoV) and Triticum mosaic virus (TriMV). Synergistic interactions between these viruses have resulted in increased rates of replication and transmission of viruses, thus increasing the potential impact on wheat yields. The wheat curl mite (WCM), Aceria tosichella Keifer is the only known vector of the viruses within the wheat-mite-virus complex.

Currently, three colonies of WCM have been characterized by differential responses to mite resistant genes (biotypes) in wheat and differential transmission of WMoV. …

Crommet Creek Conservation Area Management Plan, Joanne Glode, Dea Brickner-Wood, Ed Robinson, Wendy Weisiger, Peter Wellenberger, Rachel Stevens

PREP Reports & Publications

The Crommet Creek Conservation Area comprises the largest block of natural lands in the immediate Great Bay watershed, and in New Hampshire’s North Atlantic Coast Ecoregion. It includes the entire watershed of two tidal creeks that flow directly into the Great Bay Estuary. The area has been identified by the Great Bay Resource Protection Partnership as a protection priority due to the size of the natural area; the diversity of habitats and wildlife it supports; and it’s integral role in protecting the regional water quality and resources within the Great Bay Estuary. The Conservation Area includes headwater wetlands, and the …

Paleoecological Study Of Unguja: Can Past Environments Be Inferred From Fossilized Corals And Mollusks?, Meredith Burger, Jory Lerback

Independent Study Project (ISP) Collection

A study was conducted on Unguja, an island off the eastern coast of Tanzania, to provide an overview of the paleoecology found in the cliff shelves across the island. It is known that Zanzibar was a submerged reef from the Neogene, approximately 23 million years ago (Ma). Two tests were carried out in 16 sites around the island. One test looked at coral fossils, while the other studied fossilized shells. Both tests measured biodiversity, with one specifically studying patterns of ocean currents, and the other studying nutrient levels and deposition rates. Biodiversity tests were inconclusive but coral diversity showed a …

Parochlus Kiefferi (Garrett, 1925) In Nebraska (Diptera: Chironomidae), Barbara Hayford

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

A rare species of nonbiting aquatic midge, Parochlus kiefferi (Garrett, 1925), was discovered in Squaw Creek in the Pine Ridge of northwest Nebraska. Parochlus is a genus of midge found throughout the Southern Hemisphere and is only represented by this one species in the Northern Hemisphere. The typical North American species distribution of P. kiefferi includes high alpine and northern latitude streams, so the collection of P. kiefferi from a low elevation and low-latitude stream in Nebraska represents a range extension for the species. A survey for P. kiefferi from 83 samples from 53 stream sites in northern Nebraska yielded …

Ecology Of Tenodera Sinensis And Tenodera Angustipennis (Mantodea: Mantidae) In Eastern Virginia, Cory A. Gall

Biological Sciences Theses & Dissertations

My study, conducted on the Wildlife Refuge located on Virginia's Eastern Shore, focused on the life history, ecology, and intra- and interspecies interaction of Tenodera sinensis and T. angustipennis. Field methods included capture-mark-recapture, species, sex, and developmental life stage identification, and recorded key developmental milestones. Also, to analyze food-limiting growth, a laboratory cohort was fed ad lib, with lab and field cohorts measured bi-weekly and their mean weekly growth was compared.

When compared to a lab cohort, Tsinensis field mantises were shown not to be growth limited by the abundance of prey. In 2011, the dates of several developmental stages …

Ecological Studies Of Wolves On Isle Royale, 2011-2012, John A. Vucetich, Rolf O. Peterson

Ecological Studies of Wolves on Isle Royale

Annual Report 2011-2012

Vitamin D Sub-Set Analysis From The Flash Study, Megan Bishop, Laura Hall, Ann Mcdermott, Aydin Nazmi

Master's Theses

Vitamin D is important to the health of college students. The objective of our study was to measure sun exposure, skin pigmentation, vitamin D intake, and serum 25-hydroxyvitamin D (25[OH]D) in a subset of participants from The Following the Longitudinal Aspects of Student Health (FLASH) Study to determine the best predictors of 25(OH)D status. Participants were college-aged freshman who had their blood drawn in spring (Visit 1) and fall 2010 (Visit 2) at California Polytechnic State University (Cal Poly), San Luis Obispo, CA. (35.3°N). Vitamin D intake was measured using a 28-day food frequency recall questionnaire (specific to vitamin D …

Links From Mantle To Microbe At The Lau Integrated Study Site: Insights From A Back-Arc Spreading Center, Margaret K. Tivey, Erin Becker, Roxanne Beinart, Charles R. Fisher, Peter Girguis, Charles H. Langmuir, Peter J. Michael, Anna-Louise Reysenbach

Biology Faculty Publications and Presentations

The Lau Integrated Study Site (ISS) has provided unique opportunities for study of ridge processes because of its back-arc setting in the southwestern Pacific. Its location allows study of a biogeographical province distinct from those of eastern Pacific and mid-Atlantic ridges, and crustal compositions along the ridge lie outside the range of mid-ocean ridge crustal compositions. The Lau ISS is located above a subduction zone, at an oblique angle. The underlying mantle receives water and other elements derived from the downgoing lithospheric slab, with an increase in slab influence from north to south. Water lowers the mantle melting temperature and …

Effects Of The Manipulation Of Aboveground Plant Diversity In Restoration Management On The Diversity Of Belowground Arthropod Assemblage, Claire E. Gilmore

College of Science and Health Theses and Dissertations

A missing element in restoring belowground soil systems to a relatively healthy state may lie in promoting microarthropod diversity. By contributing to healthy nutrient cycling and assisting in the breakdown of leaf litter a diverse microarthropod population helps improve the overall soil quality. My study evaluated how current restoration practices aimed at maintaining aboveground diversity affects belowground microarthropod populations. I examined how the aboveground manipulation of plant diversity in restoration management practices affects the hyperdiverse assemblage of belowground arthropod communities. Additionally, I examined the relationship between soil nutrient content and microarthropod diversity. This study was conducted within the boundaries of …

The Milliped Genus Euryurus Koch, 1847 (Polydesmida: Euryuridae) West Of The Mississippi River; Occurrence Of E. Leachii (Gray, 1832) On Crowley’S Ridge, Arkansas, Rowland M. Shelley, Chris T. Mcallister, Henry W. Robison

Insecta Mundi

The milliped genus Euryurus Koch, 1847, and the species, E. leachii (Gray, 1832) (Polydesmida: Euryuridae), are recorded from three sites on the northern part of Crowley’s Ridge (Cross, Lee, and Poinsett counties), Arkansas, where the only prior familial records are of Auturus evides (Bollman, 1887). Coupled with the published locality of E. leachii in Phillips Co., at the southern extremity of the Ridge, the only known occurrences of both the genus and species in Arkansas and west of the Mississippi River are in this physiographic feature. The Arkansas population is geographically peripheral but anatomically intermediate between the two recognized subspecies, …

Effects Of Vegetation, Corridor Width And Regional Land Use On Early Successional Birds On Powerline Corridors, Robert A. Askins, Corrine M. Folsom-O'Keefe, Margaret C. Hardy

Biology Faculty Publications

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were

Superglue Is Not Super: An Assessment Of Superglue For Suturing Tag Incisions In A Cultured Marine Fish, Vincent Raoult, Culum Brown, Jane E. Williamson

Aquaculture Collection

No abstract provided.

Environmentally Realistic Exposure To The Herbicide Atrazine Alters Some Sexually Selected Traits In Male Guppies, Kausalya Shenoy

Biology Faculty Publications

Male mating signals, including ornaments and courtship displays, and other sexually selected traits, like male-male aggression, are largely controlled by sex hormones. Environmental pollutants, notably endocrine disrupting compounds, can interfere with the proper functioning of hormones, thereby impacting the expression of hormonally regulated traits. Atrazine, one of the most widely used herbicides, can alter sex hormone levels in exposed animals. I tested the effects of environmentally relevant atrazine exposures on mating signals and behaviors in male guppies, a sexually dimorphic freshwater fish. Prolonged atrazine exposure reduced the expression of two honest signals: the area of orange spots (ornaments) and the …

Response Of Moth Assemblages To Pine-Grassland Restoration For Red-Cockaded Woodpeckers, Kristen Robyn Benjamin

Theses and Dissertations

I examined community composition, species richness, and abundance of forest moths in three restored pine-grasslands and three nearby areas with similar site characteristics but no history of restoration management. My study addressed questions of how restoration practices impact moth species richness and abundance, whether distinct moth communities are associated with restored and unrestored plots, how vegetation has responded to restoration treatments, and how moths have responded to vegetation. I expected that changes in moth community composition could be predicted by host specialization, with species having narrow feeding niches occurring in greatest numbers where essential resources were most abundant. As expected, …

A Spatial Cluster Analysis Of Tractor Overturns In Kentucky From 1960 To 2002, Daniel M. Saman, Henry P. Cole, Agricola Odoi, Melvin L. Myers, Daniel I. Carey, Susan C. Westneat

Epidemiology and Environmental Health Faculty Publications

BACKGROUND: Agricultural tractor overturns without rollover protective structures are the leading cause of farm fatalities in the United States. To our knowledge, no studies have incorporated the spatial scan statistic in identifying high-risk areas for tractor overturns. The aim of this study was to determine whether tractor overturns cluster in certain parts of Kentucky and identify factors associated with tractor overturns.

METHODS: A spatial statistical analysis using Kulldorff's spatial scan statistic was performed to identify county clusters at greatest risk for tractor overturns. A regression analysis was then performed to identify factors associated with tractor overturns.

RESULTS: The spatial analysis …