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A Case Study Of Rhincodon Typus Scarring In Ningaloo Reef: An Assessment Of The Current Scarring Classification System, Laura Korman

Independent Study Project (ISP) Collection

Rhincodon typus are the largest fish in the sea, but little is understood about this elusive species. They are known to annually aggregate in Ningaloo Reef, Western Australia—the location of this study. In order to better understand this species, scarring was observed on a subset of the population that aggregates in Ningaloo Reef. In addition, the scarring classification system was examined to determine if it is the most effective classification system. R. typus were observed, and photographed from April 9th-April 25th, 2014. These photos were then used for identification and scarring classification purposes. The analysis of the scars on R. …

Trail Degradation In Parque Internacional La Amistad: An Intersection Of Design, Management And Use, Jordan Stark

Independent Study Project (ISP) Collection

National parks are created and used for a variety of purposes but are primarily important for the conservation of natural resources and use by visitors. While park use is meant to be non-destructive, human interaction causes changes in ecosystems, leading to conflicts between these goals. Here, I examine the causes of trail degradation and impacts on surrounding forests in Parque Internacional la Amistad (PILA), Panama. This park is a world heritage site with the primary goal of preserving some of the world’s most diverse ecosystems including rare and endangered species. However, the park entrance in Las Nubes, Cerro Punta receives …

Assessing The Homogenization Of Urban Land Management With An Application To Us Residential Lawn Care, Colin Polsky, J. Morgan Grove, Chris Knudson, Peter M. Groffman, Neil D. Bettez, Jeannine Cavender-Bares, Sharon J. Hall, James B. Heffernan, Sarah E. Hobbie, Kelli L. Larson, Jennifer L. Morse, Christopher Neill, Kristen C. Nelson, Laura A. Ogden, Jarlath O'Neil-Dunne, Diane E. Pataki, Rinku Roy Chowdhury, Meredith K. Steele

Environmental Science and Management Faculty Publications and Presentations

Changes in land use, land cover, and land management present some of the greatest potential global environmental challenges of the 21st century. Urbanization, one of the principal drivers of these transformations, is commonly thought to be generating land changes that are increasingly similar. An implication of this multiscale homogenization hypothesis is that the ecosystem structure and function and human behaviors associated with urbanization should be more similar in certain kinds of urbanized locations across biogeophysical gradients than across urbanization gradients in places with similar biogeophysical characteristics. This paper introduces an analytical framework for testing this hypothesis, and applies the framework …

What Kind Of Seed Dormancy Might Palms Have?, Jerry M. Baskin, Carol C. Baskin

Biology Faculty Publications

Palm diaspores are reported to have various kinds of dormancy. However, (1) the embryo is underdeveloped; (2) the endocarp is water permeable; and (3) the diaspores take a long time to germinate. Thus, we conclude that the diaspores of the majority of palm species have morphophysiological dormancy (MPD). The ones that do not have MPD are morphologically dormant.

Utilization Of The Invasive Alga Gracilaria Vermiculophylla (Ohmi) Papenfuss By The Native Mud Snail Ilyanassa Obsoleta (Say), Michele Guidone, Christine Newton, Carol S. Thornber

Biology Faculty Publications

The recent invasions of the red alga, Gracilaria vermiculophylla, to the Atlantic and Eastern Pacific Oceans have the potential to significantly alter intertidal and subtidal soft sediment communities. In particular, G. vermiculophylla increases habitat complexity and provides a novel hard substrate in an otherwise two dimensional habitat. Following our observations that the native omnivorous mud snail Ilyanassa obsoleta utilizes G. vermiculophylla for egg capsule deposition, our field surveys demonstrated that the in situ abundance of egg capsules on G. vermiculophylla matched abundances on a native alga Ceramium virgatumandwere at least 11–50 times greater than on all other co-occurring macrophytes. Additionally, …

Development And Assessment Of Plant-Based Synthetic Odor Baits For Surveillance And Control Of Malaria Vectors, Vincent O. Nyasembe, David P. Tchouassi, Hillary K. Kirwa, Woodbridge A. Foster, Peter E.A. Teal, Christian Borgemeister, Baldwyn Torto

All Peer-Reviewed Publications

Background: Recent malaria vector control measures have considerably reduced indoor biting mosquito populations. However, reducing the outdoor biting populations remains a challenge because of the unavailability of appropriate lures to achieve this. This study sought to test the efficacy of plant-based synthetic odor baits in trapping outdoor populations of malaria vectors. Methodology and Principal Finding: Three plant-based lures ((E)-linalool oxide [LO], (E)-linalool oxide and (E)-β-ocimene [LO + OC], and a six-component blend comprising ( E)-linalool oxide, (E)-β-ocimene, hexanal, β-pinene, limonene, and ( E)-β-farnesene [Blend C]), were tested alongside an animal/human-based synthetic lure (comprising heptanal, octanal, nonanal, and decanal [Blend F]) …

Migration Plasticity As An Adaptation To Climate Change: The Spatial Distribution And Abundance Of A Subset Of Neotropical Migrant Landbirds Wintering In The Northeastern United States, Juliette Goulet

Dissertations, Theses, and Capstone Projects

There is a need for accurate predictions of the effects of climate change on wildlife populations. Bioclimatic relationships however are potentially complicated by various environmental factors operating at multiple spatial and temporal scales. Therefore, in order to test the hypothesis that climate constraints of winter bird distributions are modified by species-specific responses to weather and climate, I relied on Christmas Bird Count data (CBC). With nearly 100 years of data, the CBC is a valuable source of information on historic and recent changes in the status and distribution of birds during the early winter period in the United States and …

Historical Vegetation Of The Tiller Area, Douglas County, Oregon Based On Glo Survey Notes, O. Eugene Hickman, John Christy

Institute for Natural Resources Publications

This project was conducted in the Tiller area east of Canyonville, to develop a landscape perspective of historical vegetation for the early settlement era. The project area covered about 128,214 acres, of which 42% was private land, 17% BLM, and 41% USFS. This area of complex topography, transitional between interior valleys of the Umpqua River and the Cascade Range, has a small rural population base sometimes impacted by local natural resource problems and management. The study area includes portions of the South Douglas County Wildland-Urban Interface zone.

Historical land survey notes from General Land Office (GLO) were used to create …

Intraspecific Variation In Carapace Morphology Among Fiddler Crabs (Genus Uca) From The Atlantic Coast Of Brazil, Kelsey R. Hampton, Melanie J. Hopkins, John C. Mcnamara, Carl L. Thurman

Faculty Work

Isolation due to geographical barriers should promote genetic and morphological divergence among populations. Marine currents flowing in opposing directions along landmasses can constitute barriers that isolate populations dependent upon aquatic dispersal. The distribution of fiddler crabs (genus Uca) is regulated primarily by the oceanic transport of their planktonic larvae and by available adult habitat. Along the Brazilian coast of eastern South America, the flow of 2 major oceanic currents separates northern from southern Uca populations, which may promote intraspecific divergence in ‘trans-Brazilian’ species. Populations of 10 Uca species were sampled at 64 locations north and south of the Ponta …

Post Disturbance Coral Populations: Patterns In Live Cover And Colony Size Classes From Transect Studies In Two Oceans, Claire A. Dolphin

HCNSO Student Theses and Dissertations

This study analyzes data acquired in French Polynesia in the Pacific and The Bahamas (Atlantic), both oceans affected by recent, well documented and sequential disturbances. For the purposes of this study, a disturbance is defined as a perturbation of environmental, physical or biological conditions that causes a distinct change in the ecosystem. After several decades of coral bleaching events, biological change, and anthropogenic impacts, rapid assessments of the coral community were accomplished by collecting photo-transects across the reefs to extract size structure of the corals, percent live tissue cover and perform a faunal evaluation. Cluster analyses and spatial autocorrelation tests …

Effects Of Invasive Winter Moth Defoliation On Tree Radial Growth In Eastern Massachusetts, Usa., Michael J. Simmons, Thomas D. Lee, Mark J. Ducey, Joseph S. Elkinton, George H. Boettner, Kevin J. Dodds

Natural Resources & the Environment

Abstract

Winter moth, Operophtera brumata L. (Lepidoptera: Geometridae), has been defoliating hardwood trees in eastern Massachusetts since the 1990s. Native to Europe, winter moth has also been detected in Rhode Island, Connecticut, eastern Long Island (NY), New Hampshire, and Maine. Individual tree impacts of winter moth defoliation in New England are currently unknown. Using dendroecological techniques, this study related annual radial growth of individual host (Quercus spp. and Acer spp.) trees to detailed defoliation estimates. Winter moth defoliation was associated with up to a 47% reduction in annual radial growth of Quercus trees. Latewood production of Quercus was reduced by …

Shell Shape Convergence Masks Biological Diversity In Gliding Scallops: Description Of Ylistrum N. Gen. (Pectinidae) From The Indo-Pacific Ocean, Alvin Alejandrino, Glené Mynhardt, Louise Puslednik, Joezen Corrales, Jeanne M. Serb

Biology

The scallop genus Amusium Röding, 1798 is one of few genera of Pectinidae that includes taxa capable of long-distance swimming or gliding. Membership of the genus has been defined primarily by shell shape, and it currently includes only three species: the type species A. pleuronectes (Linnaeus, 1758), A. balloti (Bernardi, 1861) and A. japonicum (Gmelin, 1791). In this study, we use molecular data and aspects of shell morphology to resolve the systematics of the genus. Phylogenetic reconstruction of Pectinidae using nuclear and mitochondrial DNA sequence from four genes supports a polyphyletic Amusium. Differences in internal ribbing pattern provide morphological …

Examining The Effects Of Liming On Gyrinophilus Porphyriticus With A Comparison Of Multiple Sampling Methods, Elise Marie Edwards

Theses, Dissertations and Capstones

Environmental acidification is affecting stream-associated species around the globe. As a result, different management strategies have been implemented to deal with acidification resulting from acid rain and acid mine drainage. Adding limestone to streams attempts to reverse the effects of acidification. While liming increases the pH of many acidic environments, studies involving the effects of liming on different animal species have shown mixed results. In this study, I examined the effects of liming on Gyrinophilus porphyriticus (the Spring Salamander) abundance and I also determined the best method of detection for G. porphyriticus. From June 10th to September 1st 2013, I …

The Role Of Elevation And Soil Chemistry In The Distribution And Ion Accumulation Of Floral Morphs Of Streptanthus Polygaloides Gray (Brassicaceae), A Californian Nickel Hyperaccumulator, Nathaniel S. Pope, Michael Fong, Robert S. Boyd, Nishanta Rajakaruna

Biological Sciences

Background: The flora of serpentine/ultramafic soils provides an excellent model system for the study of natural selection in plant populations. Streptanthus polygaloides is a nickel hyperaccumulator that is endemic to serpentine soils in the Sierra Nevada of California, and has four floral morphs (yellow, purple, yellow-to-purple and undulate).

Aims: We investigate three hypotheses: (1) the purple morph occurs in colder, wetter climates than the yellow morph; (2) tissue–soil ionic relationships differ among morphs; and (3) morphs occur on soils with differing elemental concentrations.

Methods: We queried herbarium records to investigate patterns of occurrence among the yellow and purple floral morphs, …

The Unseen World: Environmental Microbial Sequencing And Identification Methods For Ecologists, Naupaka B. Zimmerman, J. Izard, C. Klatt, J. Zhou, E. Aronson

Biology Faculty Publications

Microorganisms inhabit almost every environment, comprise the majority of diversity on Earth, are important in biogeochemical cycling, and may be vital to ecosystem responses to large-scale climatic change. In recent years, ecologists have begun to use rapidly advancing molecular techniques to address questions about microbial diversity, biogeography, and responses to environmental change. Studies of microbes in the environment generally focus on three broad objectives: determining which organisms are present, what their functional capabilities are, and which are active at any given time. However, comprehending the range of methodologies currently in use can be daunting. To provide an overview of environmental …

Quantitative Analysis Of Woodpecker Habitat Using High-Resolution Airborne Lidar Estimates Of Forest Structure And Composition, James E. Garabedian, Robert Mcgaughey, Stephen E. Reutebuch, Bernard R. Parresol, John C. Kilgo, Christopher E. Moorman, M. Nils Peterson

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Light detection and ranging (LiDAR) technology has the potential to radically alter theway researchers and managers collect data onwildlife–habitat relationships. To date, the technology has fostered several novel approaches to characterizing avian habitat, but has been limited by the lack of detailed LiDAR-habitat attributes relevant to species across a continuum of spatial grain sizes and habitat requirements. We demonstrate a novel three-step approach for using LiDAR data to evaluate habitat based on multiple habitat attributes and accounting for their influence at multiple grain sizes using federally endangered red-cockaded woodpecker (RCW; Picoides borealis) foraging habitat data fromthe Savannah River Site (SRS) …

Effects Of River Current Inflow On Dissolved Oxygen And Temperature Of Refuge Zones For Cisco In Lake Bemidji, Bryant C. Swenson

Journal of Earth and Life Science

The objectives of this study were to (1) determine if the inflow current from the Mississippi River affects temperature and dissolved oxygen in Lake Bemidji, (2) determine how the amount of suitable cisco Coregonus artedi habitat changes over the summer in Lake Bemidji, and (3) predict how much cisco habitat would be available under a climate warming scenario. Summer fish kill of cisco occurs in most years on Lake Bemidji resulting from low dissolved oxygen in the hypolimnion and high water temperatures in the epilimnion. Dissolved oxygen and temperature profiles provided evidence to suggest the north basin is more suitable …

A Mega-Diverse Water Beetle Genus (Coleoptera: Hydraenidae: Hydraena Kugelann) Commonly Overlooked In Southeast Asia And Its Potential Use For Environmental Biomonitoring, Hendrik Freitag

Biology Faculty Publications

This study summarizes the current knowledge of the water beetle genus Hydraena Kugelann in Southeast Asia. The surprising species diversity and endemism rates in Hydraenopsis Janssens, the only subgenus present in Southeast Asia, are discussed. Data of five published Hydraena surveys from the Philippines and Singapore are used to evaluate species richness and the occurrence of species assemblages that are subject to the presence and quality of forests. Species richness was found to be generally higher in old grown forests. Some species appeared to be confined to near-natural forests. The denomination of indicator species is impeded by adequate sampling data, …

Right Place, Wrong Species: A 20-Year Review Of Rabies Virus Cross Species Transmission Among Terrestrial Mammals In The United States, Ryan M. Wallace, Amy T. Gilbert, Dennis Slate, Richard Chipman, Amber Singh, Cassie Wedd, Jesse D. Blanton

United States Department of Agriculture Wildlife Services: Staff Publications

Introduction: In the continental US, four terrestrial mammalian species are reservoirs for seven antigenic rabies virus variants. Cross species transmission (CST) occurs when a rabies virus variant causes disease in non-reservoir species.

Methods: This study analyzed national surveillance data for rabies in terrestrial mammals. The CST rate was defined as: number of rabid non-reservoir animals/number of rabid reservoir animals. CST rates were analyzed for trend. Clusters of high CST rate counties were evaluated using space-time scanning statistics.

Results: The number of counties reporting a raccoon variant CST rate >1.0 increased from 75 in 1992 to 187 in 2011; counties with …

The Foraging Areas Of Attine Ants At The Firestone Reserve, Costa Rica, Elana A. Goldstein

Scripps Senior Theses

In tropical forest systems, attine ants are the dominant herbivores. They construct large nest structures that include foraging trails that extend to multiple plant sources throughout the forest. These foraging areas vary from nest to nest and they are highly dynamic over time and season changes. It was expected that characteristics of both the nest structure and the surrounding environment would affect the size of nest foraging areas. In this study, COMPASS survey software and ArcGIS were used to map the foraging trails and calculate the foraging areas of 12 attine ant nests located on the Firestone Reserve, over the …

Minute Pirate Bug (Orius Insidiosus Say) Populations On Transgenic And Non-Transgenic Maize Using Different Sampling Techniques, Santiago A. Palizada, Bamphitlhi Tiroesele, Difabachew B. Kondidie, Muhammad Irfan Ullah, Fatima Mustafa, Thomas E. Hunt, Pete L. Clark, Jaime Molina-Ochoa, Steven R. Skoda, John E. Foster

Department of Entomology: Faculty Publications

Field experiments were conducted to evaluate the populations of minute pirate bug [Orius insidiosus (Say)] using visual, sticky cards and destructive sampling techniques in transgenic and non-transgenic maize in three locations in Nebraska (Mead, Clay Center. and Concord) United States of America. during 2007 and 2008 . All sampling methods revealed significant counts of O. insidiosus on CP4 EPSPS maize plus an insecticide application for control of first generation O. nubilalis at R2 (blister) sampling period. Similarly, visual observations of O. insidiosus on Cry1Ab x Cry3Bb1 x CP4 EPSPS maize yielded significantly higher mean adult counts at R2 (blister) …

Effects Of Dams On Fish And Macroinvertebrate Communities In The Vermilion River, Il, Ryan Patrick Hastings

Masters Theses

Dams are a main source of anthropogenic disturbances on river systems and can affect rivers in a variety of ways. Dams have the ability to change rivers from lotic to lentic habitats, affect sediment transportation, connectivity, water quality, linkages with wetlands and the quality of in-stream and riparian habitats. The Danville Dam was constructed in 1914 on the Vermilion River in Danville, Illinois and is becoming a safety hazard for human recreation on the Vermilion River, resulting in three deaths in the last 10 years. The Illinois Department of Natural Resources in conjunction with the city of Danville has proposed …

The Effects Of Stress Hormones On Preferences For Acoustic Signals In Female Green Treefrogs (Hyla Cinerea) And Barking Treefrogs (Hyla Gratiosa), Anna Gabriell Davis

Electronic Theses and Dissertations

Ecological stressors (i.e., high predator density, low food availability) are often associated with increased variation in mate choice by females. The association between environmental stressors and variation in mate choice suggests that circulating stress hormones (i.e., glucocorticoids) may mediate such effects, but this idea remains largely unexplored. I examined how circulating glucocorticoids affect preferences for male advertisement calls in female green treefrogs, Hyla cinerea, and barking treefrogs, Hyla gratiosa. Specifically, I examined whether administration of corticosterone (CORT) decreases preferences for call rate and/or call duration - two acoustic features that are highly variable and characteristically under directional selection via mate …

The Marine Microbial Eukaryote Transcriptome Sequencing Project (Mmetsp): Illuminating The Functional Diversity Of Eukaryotic Life In The Oceans Through Transcriptome Sequencing, Patrick J. Keeling, Fabien Burki, Heather M. Wilcox, Bassem Allam, Eric E. Allen, Linda A. Amaral-Zettler, E. Virginia Armbrust, John M. Archibald, Arvind K. Bharti, Callum J. Bell, Bank Beszteri, Kay D. Bidle, Connor T. Cameron, Lisa Campbell, David A. Caron, Rose Ann Cattolico, Jackie L. Collier, Kathryn Coyne, Simon K. Davy, Phillipe Deschamps, Sonya T. Dyhrman, Bente Edvardsen, Ruth D. Gates, Christopher J. Gobler, Spencer J. Greenwood, Stephanie M. Guida, Jennifer L. Jacobi, Kjetill S. Jakobsen, Erick R. James, Bethany Jenkins, Uwe John, Matthew D. Johnson, Andrew R. Juhl, Anja Kamp, Laura A. Katz

Biological Sciences: Faculty Publications

No abstract provided.

Atrazine In Maternal Drinking Water Supply Below The Federal Maximum Contaminant Level And Risk Of Preterm Birth, Small For Gestational Age, Cryptorchidism And Hypospadias, Daniel Rice

Legacy Theses & Dissertations (2009 - 2024)

The prevalence of preterm birth, small for gestational age (SGA), and hypospadias has been increasing for several decades in the U.S resulting in significant morbidity and mortality and direct costs to society. Drinking water provides a mechanism for prolonged chronic exposure to environmental contaminants but is one of the least assessed environmental exposures in pregnancy and birth outcomes. To test the hypothesis that maternal exposure to atrazine through drinking water during pregnancy, or one or more trimesters of gestation, is associated with an increased risk of preterm birth, small for gestational age, cryptorchidism and hypospadias a retrospective cohort study was …

Ellenberg’S Indicator Values For Soil Nitrogen Concentration And Ph In Selected Swamp Forests In The Central Black Sea Region Of Turkey, Burak Sürmen, Hamdi̇ Güray Kutbay, Dudu Duygu Kiliç, Rena Huseyinova, Mahmut Kilinç

Turkish Journal of Botany

Ellenberg developed a system that assigns indicator scores for habitat characteristics of individual plant species. Swamp forests are highly diverse ecological communities and include different plant species, all of which have different ecological requirements. Ellenberg's indicator values (EIVs) were calculated for soil pH and nitrogen (N) concentration in some swamp forest species in the Central Black Sea region of Turkey. In this study, the EIVs for soil pH were usually similar in the swamp forest species studied, while some differences were found with respect to EIVs for soil nitrogen concentration. Tolerance values (TVs) of all of the studied species were …

Status Of Native Stream Fishes Within Selected Protected Areas Of The Niobrara River In Western Nebraska, Jonathan J. Spurgeon, Richard H. Stasiak, George R. Cunningham, Kevin L. Pope, Mark A. Pegg

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Lotic systems within the Great Plains are characterized by highly fl uctuating conditions through both space and time. Fishes inhabiting these systems have adopted specifi c life- history strategies to survive in such environments; however, anthropogenic disturbance to prairie streams has resulted in declines and extirpation of many native stream fi shes. Terrestrial protected areas (i.e., parks and reserves) are designated to support native fl ora and fauna and, it is assumed, to provide protection to native fi shes. We assessed the presence and relative abundance of stream fi sh populations within protected areas along the Niobrara River in western …

Evolution Of The Freshwater Sardinella, Sardinella Tawilis (Clupeiformes: Clupeidae), In Taal Lake, Philippines And Identification Of Iits Marine Sister-Species, Sardinella Hualiensis, Demian Willette, Kent E. Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

We identify the sister species of the world's only freshwater sardinella, Sardinella tawilis (Herre, 1927) of Taal Lake, Philippines as the morphologically-similar marine Taiwanese sardinella Sardinella hualiensis (Chu and Tsai, 1958). Evidence of incomplete lineage sorting and a species tree derived from three mitochondrial genes and one nuclear gene indicate that S. tawilis diverged from S. hualiensis in the late Pleistocene. Neutrality tests, mismatch distribution analysis, sequence diversity indices, and species tree analysis indicate populations of both species have long been stable and that the divergence between these two lineages occurred prior to the putative 18th century formation of Taal …

Interspecific Competition Of A New Invasive Mosquito, Culex Coronator, And Two Container Mosquitoes, Aedes Albopictus And Cx. Quinquefasciatus (Diptera: Culicidae), Across Different Detritus Environments, D. A. Yee, J. F. Skiff

Faculty Publications

The mosquito Culex coronator (Dyar and Knab) (Diptera: Culicidae) has undergone rapid range expansion in the United States since 2003, with its historical distribution in the southwest expanding eastward to the Atlantic coast. Although Cx. coronator nominally use small natural aquatic habitats for development, the use of containers (e.g., tires) makes it potentially important as container invasive. To determine the potential ecological effects of Cx. coronator on resident container species, we conducted a laboratory experiment to assess its competitive ability with two common tire-inhabiting species, Aedes albopictus (Skuse) and Culex quinquefasciatus (Say) (Diptera: Culicidae). Larvae were reared under a factorial …

The Role Of Surface Chemistry In The Toxicity Of Manufactured Cerium Dioxide Nanomaterials To Caenorhabditis Elegans, Emily Kay Oostveen

Theses and Dissertations--Plant and Soil Sciences

Manufactured CeO₂ nanomaterials (CeO₂-MNMs) are used for a wide variety of applications including diesel fuel additives and chemical/mechanical planarization media. To test the effects of CeO₂-MNM surface coating charge on to model organism Caenorhabditis elegans, we synthesized 4 nm CeO₂ with cationic (DEAE-), anionic (CM-), and neutral (DEX) coatings. In L3 nematodes exposed for 24 hours, DEAE-CeO₂ induced lethality at lower concentrations than CM- or DEX-CeO₂. Feeding slightly decreased CeO₂ toxicity, regardless of coating. In L2 nematodes exposed for 48 hours with feeding, DEAE-CeO₂ caused lethality at the …