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Avian Diversity Across Three Distinct Agricultural Landscapes In Guadalupe, Chiriquí Highlands, Panama, Jarred Jones

Independent Study Project (ISP) Collection

Deforestation of tropical forest for agricultural purposes threatens habitat loss of native species. The value of various agricultural landscapes in conserving avian populations is useful in determining diversity-conscious development plans. However, generalized results from regionalscale studies cannot be implemented to insular avian habitats. This study serves as the only current avian diversity study of the Chiriquí Highlands. To determine the effect of agricultural land use within an insular avian habitat, I compared avian diversity and site population similarity in Guadalupe, Chiriquí Highlands of the Talamanca Range, Panama. I hypothesized that avian diversity is greatest at forest edge followed by forest …

Genetic And Environmental Variation In Condition, Cutaneous Immunity, And Haematocrit In House Wrens, Scott K. Sakaluk, Laura A. Vogel, Alastair J. Wilson, E. Keith Bowers, L. Scott Johnson, Brian S. Masters, Bonnie Gp Johnson, Anna M. Forsman, Charles F. Thompson

Faculty Publications – Biological Sciences

Background

Life-history studies of wild bird populations often focus on the relationship between an individual’s condition and its capacity to mount an immune response, as measured by a commonly-employed assay of cutaneous immunity, the PHA skin test. In addition, haematocrit, the packed cell volume in relation to total blood volume, is often measured as an indicator of physiological performance. A multi-year study of a wild population of house wrens has recently revealed that those exhibiting the highest condition and strongest PHA responses as nestlings are most likely to be recruited to the breeding population and to breed through two years …

The Unseen World: Environmental Microbial Sequencing And Identification Methods For Ecologists, Naupaka Zimmerman, Jacques Izard, Christian Klatt, Jizhong Zhou, Emma Aronson

Department of Food Science and Technology: Faculty Publications

Archaea, bacteria, microeukaryotes, and the viruses that infect them (collectively “microorganisms”) are foundational components of all ecosystems, inhabiting almost every imaginable environment and comprising the majority of the planet’s organismal and evolutionary diversity. Microorganisms play integral roles in ecosystem functioning; are important in the biogeochemical cycling of carbon (C), nitrogen (N), sulfur (S), phosphorus (P), and various metals (eg Barnard et al. 2005); and may be vital to ecosystem responses to large-scale climatic change. Rarely found alone, microorganisms often form complex communities that are dynamic in space and time. For these and other reasons, ecologists and environmental scientists have become …

Trophic Dynamic Interactions In A Temperate Karst River, Elizabeth Malloy

Masters Theses & Specialist Projects

Surface streams in karst landscapes are often characterized by high nutrient levels due to incomplete filtration through series of innumerable, below-ground conduits. Seasonal growth of the filamentous alga, Cladophora, is typically associated with nutrient-rich waters. This research compared macroinvertebrate food web structure between riverine reaches with contrasting underlying karst topography, nutrient levels, and Cladophora cover during summer 2012 and autumn 2013. Recent work in these reaches found a high correlation between Cladophora cover and nutrient content, particularly nitrate. Four questions were addressed during this study: 1. Do longitudinal trends in algal and consumer δ13C values relate to decreased DIC availability …

The Vascular Flora Of Steele Creek Park And A Quantitative Study Of Vegetation Patterns In Canopy Gaps, Sullivan County, Tennessee, Phillip C. Klahs

Electronic Theses and Dissertations

An inventory of vascular plants was conducted in Steele Creek Park in Sullivan County, Tennessee from March 2013 to September 2014. The park covers an area of 892 ha and lies within the Ridge and Valley Province. The inventory of vascular plants documented 547 species of 323 genera and 101 families. Two hundred sixteen taxa were newly reported for Sullivan County. Tennessee Special Concern Species included Cardamine rotundifolia, Castanea dentata, Lonicera dioica, Allium tricoccum, Cypripedium acaule, and Panax quinquefolius. A single species, Juglans cinerea L., is considered a Tennessee Threatened Species. Vegetation patterns were studied quantitatively by installing 10 …

Invasion Is Contingent On Species Assemblage And Invasive Species Identity Inexperimental Rehabilitation Plots, A. Joshua Leffler, Eamonn D. Leonard, Jeremy J. James, Thomas A. Monaco

Natural Resource Management Faculty Publications

Ecological studies often suggest that diverse communities are most resistant to invasion by exotic plants, but relatively few local species may be available to a rehabilitation practitioner. We examine the ability of monocultures and diverse assemblages to resist invasion by an exotic annual grass (cheatgrass) and an exotic biennial forb (dyer’s woad) in experimental rehabilitation plots. We constructed seven assemblages that included three monocultures of grass, forb, or shrub; three four-species mixtures of grasses, forbs, or shrubs; and a three-species mixture of one species from each growth form in an experimental field setting to test resistance to invasion. Assemblages were …

Octopus Tetricus (Mollusca: Cephalopoda) As An Ecosystem Engineer, David Scheel, Peter Godfrey-Smith, Matthew Lawrence

Publications and Research

The Sydney octopus (Octopus tetricus) occurs in unusual numbers on a shell bed of its prey remains that have accumulated as an extended midden where additional octopuses excavate dens. Here, O tetricus are ecosystem engineers, organisms that modulate availability of resources to other species and to their own species by causing physical state changes in materials. A community of invertebrate grazers and scavengers has developed on the shell bed. Fishes are attracted to the shell bed in numbers significantly greater than in nearby habitats. Large predators, including wobbegong sharks, were attracted to and fed on concentrations of fish, inhibiting the …

Remote Sensing Estimates Of Stand-Replacement Fires In Russia, 2002–2011, Alexander Krylov, Jessica L. Mccarty, Peter Potapov, Tatiana Loboda, Alexandra Tyukavina, Svetlana Turubanova, Matthew Hansen

Michigan Tech Research Institute Publications

The presented study quantifies the proportion of stand-replacement fires in Russian forests through the integrated analysis of Landsat and Moderate Resolution Imaging Spectroradiometer (MODIS) data products. We employed 30 m Landsat Enhanced Thematic Mapper Plus derived tree canopy cover and decadal (2001–2012) forest cover loss (Hansen et al 2013 High-resolution global maps of 21st-century forest cover change Science 342 850–53) to identify forest extent and disturbance. These data were overlaid with 1 km MODIS active fire (earthdata.nasa.gov/data/near-real-time-data/firms) and 500 m regional burned area data (Loboda et al 2007 Regionally adaptable dNBR-based algorithm for burned area mapping from …

Historical Vegetation Of Three Salmon-Bearing Watersheds In The Interior Columbia River Basin, Tyanna Smith

PSU McNair Scholars Online Journal

Land use practices can be a contributing factor to environmental degradation and have been the focus of many ecological studies. One aspect that is less addressed is land use history and the effects that past practices, such as logging and grazing, can have on the current landscape. This paper describes research and the synthesis of material on the environmental history and watershed characteristics for three watersheds located within spawning and rearing areas for Chinook salmon in the Grande Ronde River Basin in Northeast Oregon: upper Grande Ronde River, Catherine Creek, and Minam River. The Grande Ronde Basin is critical spawning …

Consumption Of Low-Moderate Level Arsenic Contaminated Water Does Not Increase Spontaneous Pregnancy Loss: A Case Control Study, Michael S. Bloom, Iulian Neamtiu, Simona Surdu, Cristian Pop, Ioana-Rodica Lupsa, Doru Anastasiu, Edward F. Fitzgerald, Eugen S. Gurzau

Environmental Health Sciences Faculty Scholarship

Previous work suggests an increased risk for spontaneous pregnancy loss linked to high levels of inorganic arsenic (iAs) in drinking water sources (>10 μg/L). However, there has been little focus to date on the impact of low-moderate levels of iAs in drinking water (<10 >μg/L). To address this data gap we conducted a hospital-based case–control study in Timis County, Romania.

Breeding Time In A Migratory Songbird Is Predicted By Drought Severity And Group Size, Charles R. Brown, Mary Bomberger Brown

School of Natural Resources: Faculty Publications

Global climate change is altering the breeding phenology of many organisms, and one reported consequence of warmer average temperatures is earlier breeding times in migratory songbirds of north temperate latitudes. Less studied are the potential interactions between earlier breeding and social behavior in colonial species. We investigated how breeding time, as measured by colony initiation dates across the entire summer, in Cliff Swallows (Petrochelidon pyrrhonota) of southwestern Nebraska, USA, changed over a 30-year period and could be predicted by climatic variables, year, and colony size. Mean colony initiation date became earlier over the study, with variation best predicted …

Effects Of Biomass Harvest On Eastern Red-Backed Salamanders, Patrick J. Ruhl

Open Access Theses

In a typical forest harvest, the volume of coarse woody debris (CWD) increases from nonmerchantable material (i.e., tree-tops, limbs, and small-diameter trees) left on the forest floor. Biomass harvesting removes much of this material for bioenergy production. When removed, ecosystem services associated with CWD, such as seedbed substrate, nutrient cycling, and essential wildlife habitat, is reduced. Woodland salamanders have strict microhabitat and soil moisture requirements that make them especially sensitive to timber harvest practices, particularly those that remove CWD, a primary habitat for the group.

I monitored the abundance of Eastern red-backed salamanders ( Plethodon cinereus ) in response to …

How Discordant Morphological And Molecular Evolution Among Microorganisms Can Revise Our Notions Of Biodiversity On Earth, Daniel J.G. Lahr, Haywood Dail Laughinghouse, Angela M. Oliverio, Feng Gao, Laura A. Katz

Biological Sciences: Faculty Publications

Microscopy has revealed tremendous diversity of bacterial and eukaryotic forms. Recent molecular analyses show discordance in estimates of biodiversity between morphological and molecular analyses. Moreover, phylogenetic analyses of the diversity of microbial forms reveal evidence of convergence at scales as deep as interdomain: morphologies shared between bacteria and eukaryotes. Here, we highlight examples of such discordance, focusing on exemplary lineages such as testate amoebae, ciliates, and cyanobacteria. These have long histories of morphological study, enabling deeper analyses on both the molecular and morphological sides. We discuss examples in two main categories: (i) morphologically identical (or highly similar) individuals that are …

Persistence And Change In Community Composition Of Reef Corals Through Present, Past, And Future Climates, Robert Van Woesik, Peter J. Edmunds, Mehdi Adjeroud, Marissa L. Baskett, Iliana B. Baums, Ann F. Budd, Robert C.C. Carpenter, Nicholas S. Fabina, Tungyung Fan, Eric C. Franklin

Ocean Engineering and Marine Sciences Faculty Publications

The reduction in coral cover on many contemporary tropical reefs suggests a different set of coral community assemblages will dominate future reefs. To evaluate the capacity of reef corals to persist over various time scales, we examined coral community dynamics in contemporary, fossil, and simulated future coral reef ecosystems. Based on studies between 1987 and 2012 at two locations in the Caribbean, and between 1981 and 2013 at five locations in the Indo-Pacific, we show that many coral genera declined in abundance, some showed no change in abundance, and a few coral genera increased in abundance. Whether the abundance of …

Ecological Niches, Species Distributions, And Biogeographic Processes In Rodents On Neotropical Sky Islands, Mariano Soley

Dissertations, Theses, and Capstone Projects

This dissertation focused on the methodological and theoretical improvement of correlative ecological niche models (ENMs) to better understand the processes governing species distributions and associated evolutionary divergence in rodents inhabiting mesic conditions in the Neotropics. Focusing on a widespread rodent from northern South America (Heteromys anomalus), in the first chapter I proposed and tested a methodological approach to surmount the challenge of incorporating environmental information from the margins of species geographic ranges into ENMs. In so doing, I argue how populations that exist on the borders of species' local ranges (spatial margins) can lead to exaggerated estimates of their niches …

Ethnomedical, Ecological And Phytochemical Studies Of The Palauan Flora, Christopher Kitalong

Dissertations, Theses, and Capstone Projects

There has been a serious deterioration of Palauan culture, language and traditional practices over the last century. To promote health and avoid this deterioration of tradition, ecological, ethnobotanical and phytochemical studies have been carried out on the plant Phaleria nisidai Kaneh. (Thymelaeaceae), "Delal a Kar", Palauan for "Mother of Medicine". This study is the first study that sets the foundations for the development of natural Palauan therapeutics, through validation of ethnomedically significant plants. Validations of these plants is done through documenting Palauan plant ethnomedical data; mapping the distribution of Palauan plants on limestone Rock Islands; and analyzing ethnopharmacological and phytochemical …

Spatial And Temporal Patterns Of Carbon Storage In Forest Ecosystems On Hainan Island, Southern China, Hai Ren, Linjun Li, Qiang Liu, Xu Wang, Yide Li, Dafeng Hui, Shuguang Jian, Jun Wang, Huai Yang, Hongfang Lu, Guoyi Zhou, Xuli Tang, Qianmei Zhang, Dong Wang, Lianlian Yuan, Xubing Chen

Biology Faculty Research

Spatial and temporal patterns of carbon (C) storage in forest ecosystems significantly affect the terrestrial C budget, but such patterns are unclear in the forests in Hainan Province, the largest tropical island in China. Here, we estimated the spatial and temporal patterns of C storage from 1993–2008 in Hainan's forest ecosystems by combining our measured data with four consecutive national forest inventories data. Forest coverage increased from 20.7% in the 1950s to 56.4% in the 2010s. The average C density of 163.7 Mg C/ha in Hainan's forest ecosystems in this study was slightly higher than that of China's mainland forests, …

Factors Limiting The Spread Of The Protective Symbiont Hamiltonella Defensa In Aphis Craccivora Aphids, Hannah R. Dykstra, Stephanie R. Weldon, Adam J. Martinez, Jennifer A. White, Keith R. Hopper, George E. Heimpel, Mark K. Asplen, Kerry M. Oliver

Entomology Faculty Publications

Many insects are associated with heritable symbionts that mediate ecological interactions, including host protection against natural enemies. The cowpea aphid, Aphis craccivora, is a polyphagous pest that harbors Hamiltonella defensa, which defends against parasitic wasps. Despite this protective benefit, this symbiont occurs only at intermediate frequencies in field populations. To identify factors constraining H. defensa invasion in Ap. craccivora, we estimated symbiont transmission rates, performed fitness assays, and measured infection dynamics in population cages to evaluate effects of infection. Similar to results with the pea aphid, Acyrthosiphon pisum, we found no consistent costs to infection using …

Sympatric Prey Responses To Lethal Top-Predator Control: Predator Manipulation Experiments, Benjamin L. Allen, Lee R. Allen, Richard M. Engeman, Luke K.-P. Leung

United States Department of Agriculture Wildlife Services: Staff Publications

Introduction: Many prey species around the world are suffering declines due to a variety of interacting causes such as land use change, climate change, invasive species and novel disease. Recent studies on the ecological roles of top-predators have suggested that lethal top-predator control by humans (typically undertaken to protect livestock or managed game from predation) is an indirect additional cause of prey declines through trophic cascade effects. Such studies have prompted calls to prohibit lethal top-predator control with the expectation that doing so will result in widespread benefits for biodiversity at all trophic levels. However, applied experiments investigating in situ …

Pendapatan Daerah, Pembiayaan Kesehatan, Dan Gizi Buruk Pada Balita: Studi Korelasi Tingkat Kabupaten/Kota, Septyana Choirunisa, Asri C. Adisasmita

Kesmas

Pendanaan kesehatan merupakan salah satu faktor penting dalam memengaruhi derajat kesehatan, termasuk salah satu masalah gizi pada balita yang disebut gizi buruk. Oleh karena itu, penelitian ini bertujuan mendeskripsikan pendapatan daerah dan pembiayaan kesehatan serta korelasinya dengan gizi buruk pada balita di tingkat kabupaten/kota di Indonesia tahun 2007. Penelitian ini merupakan studi ekologi/korelasi. Data pendapatan daerah dan pembiayaan kesehatan didapat dari Kementerian Keuangan, sedangkan data gizi buruk menggunakan data Riset Kesehatan Nasional tahun 2007. Sebanyak 250 kabupaten/kota yang diteliti dengan tidak mengikutsertakan kabupaten/kota yang datanya tidak lengkap atau tidak valid. Secara nasional, hanya persentase pendapatan asli daerah (PAD) per total …

Acute Effects Of Tio2 Nanomaterials On The Viability And Taxonomic Composition Of Aquatic Bacterial Communities Assessed Via High-Throughput Screening And Next Generation Sequencing, Binh Chu, Tiezheng Tong, Jean-François Gaillard, Kimberley A. Gray, John J. Kelly

Biology: Faculty Publications and Other Works

The nanotechnology industry is growing rapidly, leading to concerns about the potential ecological consequences of the release of engineered nanomaterials (ENMs) to the environment. One challenge of assessing the ecological risks of ENMs is the incredible diversity of ENMs currently available and the rapid pace at which new ENMs are being developed. High-throughput screening (HTS) is a popular approach to assessing ENM cytotoxicity that offers the opportunity to rapidly test in parallel a wide range of ENMs at multiple concentrations. However, current HTS approaches generally test one cell type at a time, which limits their ability to predict responses of …

Historical Demography And Dispersal Patterns In The Eastern Pipistrelle Bat (Perimyotis Subflavus), Alynn M. Martin

Masters Theses

The recent emergence of threats to North American bat conservation has prompted increased population genetics research on high risk species. The eastern pipistrelle bat is affected by both white-nose syndrome and wind turbine mortality. However, little work has been done regarding the population structure and effective population size of this species. Using the HVI region of the mitochondria and eight microsatellite loci, I analyzed male and female structure across the sample range of P. subflavus and estimated the effective population size of their populations. Pairwise F_ST values indicate that there is one panmictic population based on microsatellite data, while …

Effects Of Contaminated St. Lucie River Saltwater Sediments On An Amphipod (Ampelisca Abdita) And A Hard-Shell Clam (Mercenaria Mercenaria), Tham C. Hoang, Gary M. Rand

School of Environmental Sustainability: Faculty Publications and Other Works

The St. Lucie estuary (SLE) ecosystem in South Florida has been shown to be contaminated with metals and pesticides. Our earlier studies also showed that aquatic organisms, especially benthic species in the SLE ecosystem, might be potentially at high risk from copper (Cu) exposure. The objectives of this study were to conduct studies with separate groups of organisms exposed to seven field-collected sediment samples from the St. Lucie River according to standard procedures to evaluate toxicity and tissue concentrations of Cu and zinc (Zn). Short term and longer term whole sediment acute toxicity studies were performed with Ampelisca abdita and …

Analysis Of High Fat Diet Induced Genes During Mammary Gland Development: Identifying Role Players In Poor Prognosis Of Breast Cancer, Raquel C. Martinez-Chacin, Megan Keniry, Robert Dearth

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Background

Epidemiological studies have shown that consumption of a high-fat diet (HFD) increases the risk of developing breast cancer (BC). Studies in rodents have shown HFD causes changes in the genetic programming of the maturing mammary gland (MG) increasing the susceptibility of developing the disease. Less is known about how HFD induced genes impact BC development. HFD exposure two weeks before conception to six weeks of age was previously shown to dramatically change MG gene expression in 10 week old mice. Therefore, we investigated these differentially expressed HFD-induced genes for their expression in BC using the NKI 295 breast tumor …

The Show Cave Of Diros Vs. Wild Caves Of Peloponnese, Greece - Distribution Patterns Of Cyanobacteria, Vasiliki Lamprinou, Daniel B. Danielidis, Adriani Pantazidou, Alexandra Oikonomou, Athena Economou-Amilli

International Journal of Speleology

The karst cave ‘Vlychada’of Diros, one of the oldest show caves in Peloponnese, sustains extended phototrophic biofilms on various substrata – on rocks inside the cave including speleothems, and especially near the artificial lighting installation (‘Lampenflora’). After a survey of the main abiotic parameters (Photosynthetically Active Radiation -PAR, Temperature -T, Relative Humidity -RH, Carbon Dioxide -CO₂) three clusters of sampling sites were revealed according to Principal Component Analysis (PCA): i) the water gallery section predominately influenced by CO₂, ii) the dry passages influenced by RH and PAR, and iii) the area by the cave exit at …

The Gps Craze: Six Questions To Address Before Deciding To Deploy Gps Technology On Wildlife, A. David M. Latham, M. Cecilia Latham, Dean P. Anderson, Jen Cruz, Dan Herries, Mark Hebblewhite

Wildlife Biology Faculty Publications

GPS and satellite technology for studies on wildlife have improved substantially over the past decade. It is now possible to collect fine-scale location data from migratory animals, animals that have previously been too small to deploy GPS devices on, and other difficult-to-study species. Often researchers and managers have formatted well-defined ecological or conservation questions prior to deploying GPS on animals, whereas other times it is arguably done simply because the technology is now available to do so. We review and discuss six important interrelated questions that should be addressed when planning a study requiring location data. Answers will clarify whether …

A Multi-Scale Approach To Study Predator-Prey Interactions And Habitat Use Of Pinfish, Lagodon Rhomboids, Dinorah Helena Chacin

USF Tampa Graduate Theses and Dissertations

Biological processes like species interactions and patterns such as abundance and distribution observed in nature can vary depending on the scale at which the subject of interest is evaluated. Knowing that there is no single natural scale at which systems should be studied, in this thesis, I conducted a series of basic and applied ecological approaches in order to examine the phenomena that can occur at different scales of space, time, and ecological organization.

Species abundances can vary over large spatial and temporal scales. By studying the habitat use of an abundant species, which uses a wide range of habitats, …

Fact Or Fiction: Random Mating In Field Populations Of Western Corn Rootworm (Diabrotica Virgifera Virgifera Leconte) Emerging On Bt And Refuge Corn Plants, Steven Joel Smith

Open Access Theses

The western corn rootworm, or WCR, (Diabrotica virgifera virgifera LeConte) is the most significant pest of field corn (Zea mays) in the United States, and has recently expanded its range into Europe. Since 2004, hybrid corn containing Bt toxins targeting the corn rootworm complex have been heavily adopted and are now the primary control measure for this pest in North American corn production. ^ The evolution of resistance is an ongoing concern, and to ensure Bt products will retain their usefulness, insect resistance management (IRM) tactics using various refuge structures have been adopted. One of the key …

Can Fire Atlas Data Improve Species Distribution Model Projections?, Shawn M. Crimmins, Solomon Z. Dobrowski, Alison R. Mynsberge, Hugh D. Safford

Forest Management Faculty Publications

Correlative species distribution models (SDMs) are widely used in studies of climate change impacts, yet are often criticized for failing to incorporate disturbance processes that can influence species distributions. Here we use two temporally independent data sets of vascular plant distributions, climate data, and fire atlas data to examine the influence of disturbance history on SDM projection accuracy through time in the mountain ranges of California, USA. We used hierarchical partitioning to examine the influence of fire occurrence on the distribution of 144 vascular plant species and built a suite of SDMs to examine how the inclusion of fire-related predictors …

Pattern And Rate Of Decline Of A Population Of Carolina Hemlock (Tsuga Caroliniana Engelm.) In North Carolina, Foster Levy, Elaine S. Walker

ETSU Faculty Works

We monitored a population of Carolina Hemlocks in northwestern North Carolina for four years to examine the rate and pattern of decline in response to infestation by Adelges tsugae (Hemlock Woolly Adelgid). Our yearly census of hemlock condition and severity of the adelgid infestation included trees of all sizes. We estimated declines in condition as the portions of the leaf canopy that were lost. Initially, infestation occurred throughout the population but was severe in only a small cluster of individuals. Within 1 year, the area of severe infestation increased in size to encompass 48% of the population. In another region …