Digital Commons Network^™

The Campus Flora, California State Polytechnic University, Humboldt, James P. Smith Jr

Botanical Studies

No abstract provided.

Hbb Gene Mutations And Their Impact On Phenotype And Protein Function In Β-Thalassemia Families From Dera Ismail Khan, Pakistan, Muhammad Ayaz, Muhammad Muzammal, Maria Shafiq, Nisar Ahmad, Dua Iman, Maria Faraz, Yaser Uddin Hoti, Sami Siraj, Muzammil Ahmad Khan, Jabbar Khan

Makara Journal of Science

The current genetic study aimed to screen out the genetic basis of ß-thalassemia in five unrelated consanguineous Pakistani families. Blood samples were collected, and targeted Sanger Sequencing of the HBB gene was done. Serum Interleukin-6 (IL-6) and quantitative measurements of T Helper and T Suppressor Lymphocytes were also carried out. Additionally, in silico analysis, including protein modeling, Protein-Protein docking, and Multiple sequence alignment, was also performed. Genetic analysis identified a homozygous mutation c.92+5G > C (IVS-I+5 G > C) in families 1, 2, and 3, which resulted in β⁺/ β⁺ Thalassemia Intermedia phenotype. While in the case of family …

A List Of The Vascular Plants Of Iowa, James P. Smith Jr

Botanical Studies

No abstract provided.

Toxic Plants In Zimbabwe: The Lantana Camara Species, Frank Kapungu, Cecilia Masvingwe

Poisonous Plant Research (PPR)

Lantana camara is a major invasive plant species in Zimbabwe. Its toxic effects pose a threat to livestock production, biodiversity, and development. A survey was carried out throughout the country to investigate the distribution of L. camara in Zimbabwe and assess the extent of its spread. Identification was done by toxicologists with the support of an experienced botanist from the National Herbarium of Zimbabwe. The location of the plants was identified using a portable Garmin eTrex® 10 Handheld GPS navigation device., and the coordinates were recorded. Quantum Geographic Information System (QGIS) was used to plot the map. L. camara was …

Implementation Of The Trojan Sex Chromosome Approach In The San Juan River: Investigation And Validation Of Feminization Methods For Channel Catfish, Chad Teal

Funded Research Records

No abstract provided.

Phosphoric Acid-Mediated Regeneration Of Sugarcane Bagasse Cellulose-Rich Fraction For Enzymatic Production Of Water-Soluble Cellulosic Oligomers, Chiou-Yeong Saw, David Agus Setiawan Wibisono, Tsung-Yen Wu, Yung Chang, Chi-Fai Chau

Journal of Food and Drug Analysis

An integrated strategy was developed to promote conversion of a sugarcane bagasse cellulose-rich fraction into water-soluble cellulosic oligomers (WCOs) through phosphoric acid-mediated regeneration and enzymatic hydrolysis. Alkaline pretreatment on sugarcane bagasse powder increased glucan content from 57.6 to 93.4 g/100 g sample and lowered Klason lignin to 6.1 g/100 g sample. Phosphoric acid-mediated regeneration was subsequently capable of reorganizing the structure of cellulose from sugarcane bagasse, resulting in a decrease of crystallinity from 72.9 to 64.0% and introducing cellulose II-like features. The hydration state of regenerated cellulose strongly influenced hydrolysis performance, as the hydrated form showed significantly higher solubilization (810.4 …

Temporary Cattle Identification: Benefits Of Marking With Hair Bleach, Melanie Heaton, Reganne K. Briggs, Rebekah Iverson, Brooke Holgate, David Secrist

All Current Publications

Temporary identification is an important management tool for beef producers. Animals are routinely marked following breeding, pregnancy diagnosis, vaccination, treatment, sorting, shipping, and marketing so they can be quickly identified without repeated handling. Effective temporary identification improves labor efficiency, reduces animal stress, and helps ensure management decisions are applied to the correct animals. This fact sheet provides information on temporary cattle marking using hair bleach.

Comparison Of Preenrichment And Screening Methods For The Detection Of Salmonella Enterica Serovar Agona In Meat Analog Products, Kylie Sacapano, Amanda Tabb, Biola Fatusin, Samantha M. Covaia, Isha Shingre, Lieuchi Phan, Kyson Chou, Jamie Du, Beilei Ge, Donna Williams-Hill, Rosalee S. Hellberg

Food Science Faculty Articles and Research

With the growing demand and variety of meat analogs on the commercial market, there is a need to revisit testing methods for foodborne pathogens in these products. The U.S. Food and Drug Administration (FDA) regulatory methods for Salmonella enterica detection in meat analogs follow the Bacteriological Analytical Manual and are relatively time-consuming. Therefore, this study aimed to compare preenrichment and screening methods for the detection of Salmonella in meat analogs by evaluating current FDA reference methods alongside alternative preenrichment broths and rapid molecular screening techniques. Meat analog samples were inoculated with S. enterica serovar Agona at three levels: (1) uninoculated …

A Calibrated And Conformal Deep Learning Framework For Trustworthy Antinuclear Antibody Pattern Recognition With Selective Referral To Experts, Hussein Ali Hussein Al Naffakh, Ahmed Dheyaa Radhi, Raghdah Maytham Hameed, Muntaha Abdullah Reishaan, Fouad A. Majeed, Rozaida Ghazali

Karbala International Journal of Modern Science

Reading antinuclear antibody patterns on human epithelial cells by indirect immunofluorescence is the reference screen for systemic autoimmune rheumatic diseases, but it is slow, subjective, and variable between observers. Deep learning reaches high accuracy on this task, yet most systems return a single prediction without stating how reliable it is, which is unsafe in a diagnostic workflow. This paper presents an intelligent decision support framework built around a single calibrated uncertainty signal. That signal is the control variable for four reliability modules: confidence calibration, conformal prediction, error detection, and selective referral. A feature space out of distribution detector serves as …

Barriers And Facilitators To Health Literacy Among Black Americans With Overweight And Obesity In South Carolina: A Mini-Ethnographic Study, Shelly Campbell-Timmons

Doctoral Dissertations and Projects

The purpose of this qualitative mini ethnography adapted from traditional ethnography with limited time and scope, was to explore and understand perceptions of barriers and facilitators to health literacy among Black Americans with overweight and obesity in three South Carolina counties. Population data showed that approximately 40.3% of U.S. adults are obese. Moreover, Non-Hispanic Black communities are disproportionately affected by overweight and obesity despite efforts to combat the weight-related health risk. Still, limited health literacy should be the focus of public health strategies like teach-back and plain language communication, to address overweight and obesity prevalence and disparities. The study was …

Guide To Automated Surge Irrigation In Utah, Ngoni Mufute, Matt Yost, Burdette Barker, Clay Carter, Jonathan A. Holt, Grant Cardon

All Current Publications

This guide discusses the benefits and drawbacks of automated surge irrigation and the equipment needed for setup to make it beneficial to irrigators.

Otolith Morphological Variations Reveal Intraspecific Diversity In Two-Spot Barb, Pethia Ticto (Hamilton, 1822), Inhabiting The Riverine Ecosystem, Insha Hassan, Lubna Yasmeen, Mohd Sadiq, Ameer Hamza, Mohammad Afzal Khan

Turkish Journal of Zoology

The intraspecific variation in otolith wavelet coefficients, contours, and morphometric variables (six size and nine shape indices) was analyzed to discriminate stock variation in Pethia ticto collected from four selected sites along the River Ganga (Narora, Kanpur, Varanasi, and Bhagalpur). The wavelet coefficients extracted revealed symmetrical yet site-specific contour variations, particularly along the rostral, dorsal, and posterior margins, with the fourth-level wavelet explaining 98% of the cumulative accuracy and being selected for contour analysis. Permutational analysis of multivariate dispersion (PERMDISP) (F = 6.11, p = 0.002) and permutational multivariate analysis of variance (PERMANOVA) (F = 8.42, R2 = 0.179, p …

Validation Of Next‑Generation Sequencing‑Derived Circulating Mrna Variants As Potential Diagnostic Tools In Hepatocellular Carcinoma And Cholangiocarcinoma, Daniel Zezulinski, Maarouf A. Hoteit, David E. Kaplan, Tingting Zhan, Cataldo Doria, Timothy M. Block, Aejaz Sayeed

Department of Pharmacology, Physiology, and Cancer Biology Faculty Papers

Liquid biopsy can transform oncology practice through early detection and real‑time monitoring of cancer progression and response to treatment. Circulating cell‑free tumor RNA offers promise as a novel and emerging alternative to circulating cell‑free tumor DNA for detecting the presence and understanding the biology of liver tumors. Both circulating DNA and RNA, which predominantly reside in extracellular vesicles, carry evidence of vital germline and somatic mutations. High impact single nucleotide changes, insertions and deletions in circulating RNA (ctRNA) serve a key role in cancer development and progression. Tumor cells exploit the RNA splicing machinery to induce structural and functional changes …

Simotang Oral Liquid Alleviates Functional Dyspepsia-Related Motility Dysfunction Through Ca²⁺-Dependent Smooth Muscle Contraction And Nrf2/Nf-Κb Modulation, Guo Mao, Chunxiang He, Jiaqin Liu, Dahua Wu, Puhua Zeng, Ye Mao

Journal of Food and Drug Analysis

Functional dyspepsia (FD) is a disorder of gut-brain interaction involving heterogeneous motor, sensory, immune, and oxidative stress-related mechanisms. Simotang oral liquid (SMT), a traditional Chinese medicine formulation used for dyspeptic and gastrointestinal motility-related symptoms, has not been evaluated with an integrated clinical, functional, and molecular framework. This single-arm prospective pre-post study assessed gastric emptying by the 13C-octanoic acid breath test, gastric electrical activity by electrogastrography, postprandial tolerance by nutrient drink testing, symptom scores, serum biomarkers, and gastric antral tissue markers in patients with FD. FD-like mice were used for charcoal meal transit, smooth muscle strip tension, calcium channel blockade, and …

Spatiotemporal Variations Of Tidal Asymmetry Along The Coast Of Taiwan: Characteristics And Implications, Ting-Chieh Lin, Tai-Wen Hsu, Tzu-Chun Huang, Chun-Yuan Lin

Journal of Marine Science and Technology–Taiwan

This study presents the first systematic investigation into the spatiotemporal characteristics and evolutionary trends of tidal asymmetry along the coast of Taiwan from 2003 to 2022, employing a moving window method combined with the S_TIDE toolbox.  By quantifying the skewness of the Main Tidal Asymmetry Combinations (MTAC) and their temporal variations, the study reveals significant regional disparities between the eastern and western coasts.  The western coast is primarily dominated by the M2-M4 combination, with the northwestern region exhibiting a flood dominance pattern and the southwestern region characterized by ebb dominance.  Conversely, the eastern coast, attributed to its open topography and …

Synchronous Deep Reinforcement Learning For Optimized Storage Assignment Of Ship Blocks, Gawon Lee, Jaehyeon Heo, Misung Kim, Hyerim Bae

Journal of Marine Science and Technology–Taiwan

This paper presents a deep reinforcement learning (RL) framework for optimizing block storage allocation in shipbuilding yards. During the shipbuilding process, vessels are constructed in block units to maximize the operational efficiency. Following assembly, these blocks must be stored in limited yard spaces, creating a complex variant of the binary packing problem. This storage allocation problem is further complicated by operational constraints, including the barge capacity and transportation time restrictions. Moreover, poor storage decisions can lead to redundant block movements, which can adversely affect downstream processes and increase operational costs. To resolve this problem, a policy-gradient-based synchronous RL model was …

Exploring Evolution As A Unifying Theme In The General Biology For Majors Course Sequence, While Iteratively Examining Attitudes And Decisions About Learning: An Application Of Lonergan’S Transcendental Method, Christine E. Gray

San Jose - Lonergan Chair in Catholic Philosophy

As I reflect upon my journey as an educator, I recognize it has been shaped, in large part, by my own foundational roots in the Catholic Liberal Arts tradition. As I prepare for another academic year, I find myself, once again, considering how my pedagogical practice can better meet my students “where they are” in my General Biology for Majors I and II courses. Since that “place” is shaped by a student’s prior experiences, both in and out of the classroom, I also recognize that “place” is unique for each student. This is precisely why each term pushes me to …

Integration Of Freshness Monitoring And Active Packaging Technologies For Aquatic Products, Maria Ali, Abdul Waheed Ghanghro, Bheem Raj Serani, Mahrukh Zakir

Journal of Food and Drug Analysis

Aquatic products are nutritionally valuable but highly perishable, with quality loss driven by microbial spoilage, biochemical changes, including total volatile basic nitrogen (TVB-N), trimethylamine (TMA) and histamine, and physicochemical deterioration, including lipid oxidation, gas production and texture loss. Conventional packaging slows these processes but does not report real-time freshness. This review analyzes how active packaging (antimicrobial, antioxidant, enzyme-inhibiting, and oxygen-scavenging systems, including bio- and nanocomposites) can be combined with freshness monitoring technologies (colorimetric/pH indicators, gas sensors, biosensors, and digital tools such as radio frequency identification (RFID) and Internet of Things (IoT) systems) specifically for fish, shrimp, and mollusks. We first …

High Tunnel Pollinators, Miranda L. Jones, Sheriden Hansen, Kelsey Graham, Robert Nelson Schaeffer, Brent Black

All Current Publications

High tunnels are used to extend the growing season. Unlike greenhouses, high tunnels are semi-permanent and not heated or cooled by a climate-control system. Instead, they use plastic sheeting to trap solar heat, allowing for season extension in temperate climates around spring and fall. Bee pollination can improve yields for several valuable crop species grown in high tunnels. Because high tunnels are largely enclosed, bees are typically released and managed within the structure. This fact sheet provides information on how to obtain and manage bee pollinators in high tunnels.

Part Iii. Uncanny Spaces And The Trauma Of The Misplaced: Revisiting Psychological Athetosis As The Ecogothic, George Conesa

The International Journal of Ecopsychology (IJE)

After climbing mount “Ktaadn” [Katahdin] in Maine, Thoreau observed that not all of nature was a one size-fits-all walk in the friendly woods with foxes cavorting and butterflies a-fluttering. While revisiting ecogothic perspectives (Conesa, 2024), a topical turn is made toward understanding interconnected fear responses to uncanny landscapes as a factor of previous and new traumatic events. A deep historical and comprehensive appraisal of organisms in their natural and newly found umwelten suggests that the ecogothic uncanny is a common experience of organism-territory accommodations to “place.” During these place-mind interstices, past traumatic events are amplified into newly …

American Letters # 1 -- Scott Nearing (1975), Editorial Board

The International Journal of Ecopsychology (IJE)

No abstract provided.

Genomic Analysis Reveals New Subspecies Of Cercyonis Scudder, 1875 (Nymphalidae: Satyrinae: Satyrini), Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Todd L. Stout, Michael S. Fisher, Robb Hannawacker, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Genomic analysis of Cercyonis (Cercyonis) Scudder, 1875 (Nymphalidae Rafinesque, 1815) partitions the subgenus into three species groups and reveals five new subspecies from the USA (type localities in parentheses): Cercyonis (Cercyonis) pegala koosharem Stout and Grishin, ssp. n. (Utah, Sevier Co.), Cercyonis (Cercyonis) pegala lasala Grishin, M. Fisher, and Hannawacker ssp. n. (Utah, Grand Co.), Cercyonis (Cercyonis) pegala hortoni Grishin, ssp. n. (Arizona, Gila Co.), Cercyonis (Cercyonis) meadii maculana Grishin, ssp. n. (Colorado, Montezuma Co.), and Cercyonis (Cercyonis) meadii rimana Grishin, ssp. n. (Arizona, Yavapai Co.). A neotype is designated for Satyrus boopis Behr, 1864 (USA, California, Contra Costa Co.). …

Gc-Ms Profiling And Antibacterial Activity Of Cold-Macerated Garlic Extracts Against Multidrug-Resistant Uropathogens, Fatima A. Khalaf, Saeed A. Fayadh

Karbala International Journal of Modern Science

The growing number of cases of multidrug-resistant (MDR) urinary tract infections has made the clinical management of urinary tract diseases a significant challenge; therefore, the need for effective adjunctive therapies cannot be overemphasized. This study evaluated the bioactive components and antibacterial efficacy of cold-macerated garlic extracts obtained using distilled water, 70% ethanol and hexane solvents against antimicrobial-resistant urinary isolates. Out of 250 urine samples that were analyzed, 124 (49.6%) showed significant microbial growth, with Escherichia coli being the most frequently isolated organism. The results of the phytochemical screening and Gas Chromatography-Mass Spectrometry (GC-MS) analysis showed that the ethanolic extract had …

Ai-Supported Analysis Of Jury Deliberation Impact Factors, Jennifer Siciliani Phd

Generative AI Teaching Activities

Students conduct a controlled, two-run generative AI jury simulation to examine how a single socio-legal variable affects simulated jury deliberation. They compare and manually code the AI-generated outcomes against peer-reviewed human jury research to evaluate the model’s accuracy, limitations, and potential biases.

Females With Urinary Incontinence Demonstrate Impaired Postural Stability, Jean L. Mccrory, Corrie Mancinelli, Kate Harrison, Samantha K. Rondini Monaco, Krystal L. Thomas

Internet Journal of Allied Health Sciences and Practice

Introduction: Females with urinary incontinence (UI) have an increased risk of falls.  Few studies have quantified postural control, namely center of pressure (COP) movement and vertical ground reaction force in static and dynamic tasks, in females with UI. Purpose: The aim of our study was to examine static and perturbed postural stability in females with UI compared to unaffected females. Methods: The study design was a between-group comparison (UI vs control) on our static outcome variables of anteroposterior and mediolateral COP sway, COP displacement, average and instantaneous maximum COP velocity, and standard deviations of anteroposterior and mediolateral COP movement and …

Effectiveness Of A Training Program In Enhancing The Knowledge Of Intensive Care Unit Staff Regarding Emergency Response: A Quasi-Experimental Pre–Post Study, Abdulrahman Abbas Jasim, Shimaa Gomaa, Rofida Albash, Amira B Kassem, Shahab Abdulla, Ralela Makline, Mustafa Abbass

AUIQ Complementary Biological System

Background: Timely and effective emergency response by intensive care unit (ICU) staff is critical for patient outcomes. Objective: To evaluate the effect of a structured educational intervention on ICU staff knowledge of emergency response. Methods: A one-group quasi-experimental pre–post study was conducted among ICU healthcare professionals in Thi-Qar Governorate hospitals. Participants completed a validated questionnaire assessing emergency response knowledge before and after a structured lecture covering cardiopulmonary resuscitation (CPR), airway management, bleeding control, and the ABCDE protocol. Paired statistical analyses were applied, and p-values <0.05 were considered significant. Results: Forty-one participants completed both assessments. Significant improvements were observed in recognition …

The Effects Of Chronic Nicotine Exposure On Dopamine-Mediated Reinforcement Learning And Striatal Neurotransmission, Srishti Bose

Dissertations, Theses, and Capstone Projects

Tobacco is one of the most widely used substances across the United States; tobacco consumption is linked with several diseases and is one of the leading causes of preventable death in the country. Nicotine is the active substrate found in tobacco products, acting as a stimulant, which reinforces continued use. The introduction of tobacco-free options such as e-cigarettes and oral pouches has driven an increase in nicotine exposure across the population, especially in young adults. Acute nicotine use induces neuroadaptations in the mesolimbic dopaminergic system, which mediates reinforcement learning and addiction, that potentiates reward-related neurotransmission. Furthermore, there are clinical studies …

Individualized Bayesian Inference Identifies Novel Genetic Variants For Parkinson's Disease, Jin Ren, Yasaman J. Soofi, Md Asad Rahman, Qing Lu, Jinling Liu

Engineering Management and Systems Engineering Faculty Research & Creative Works

Parkinson's disease (PD) is a complex neurodegenerative disorder with a significant genetic component. While genome-wide association studies (GWAS) have been instrumental in identifying genetic variants associated with PD, the reliance on large sample sizes and population-level analyses may overlook variants with lower minor allele frequencies or individual-specific relevance. Individualized Bayesian Inference (IBI) offers a promising method to complement GWAS by identifying and prioritizing candidate genetic markers at both the individual and patients-like-me subgroup levels. This study evaluates the application of IBI to PD genetics, using GWAS as a baseline for comparison. We analyzed genetic data from the Fox Insight online …

The Cranial Nerves And Electrical Stimulation, Devin K. P. Adair

Dissertations, Theses, and Capstone Projects

Cranial nerves provide afferent pathways that enable bottom-up modulation of central autonomic and cognitive neural pathways. Because these pathways project to brainstem nuclei such as the nucleus tractus solitarius and engage neuromodulatory systems, including the locus coeruleus, electrical stimulation offers a mechanistically grounded approach to influencing brain function. This thesis tested whether active transcutaneous auricular vagus nerve stimulation (taVNS) produces physiological responses indicative of parasympathetic engagement, defined as decreases in heart rate, increases in heart rate variability, and decreases in respiration relative to a dose-matched earlobe control condition. Using cardiac and respiratory measures as physiological markers, taVNS at the tragus …

Insect Monitoring Without Pitfalls: Seven Steps For Robust Insect Sensing Systems, Jamie Alison, Luca Pegoraro, Jarrett Blair, Yuval Cohen, Birgen Haest, Jacob Idec, Jacob Kamminga, Jenna Lawson, Meng Li, Leandro Aparecido Do Nascimento, Charlotte L. Outhwaite, Benjamin Rutschmann, Maximilian Sittinger, Mariana Abarca, Et Al

Biological Sciences: Faculty Publications

1. Data shortages fuel controversy about an ongoing insect biodiversity crisis. Insects are immensely diverse and functionally critical for ecosystems, yet data on their trends remain patchy and biased. Sensors, ranging from camera traps and acoustic recorders to weather radar stations, are set to transform data collection in entomol- ogy. Meanwhile, AI models that extract biological information from sensors are improving at a startling rate.

2. Realising the potential of automated monitoring means progressing from proof- of-concept studies to scalable insect sensing systems. However, stakeholders face severe operational challenges when adopting a growing suite of sensors, models and protocols for …