Digital Commons Network^™

The Interplay Of Cytokine Expression, Cardiac Phenotype, And Heritability In Cardiovascular Health In Mexican Americans., Veronica O'Brien, Ana Leandro, Marcio Almeida, John Blangero, Joanne Curran

Research Colloquium

Background: Cardiovascular disease (CVD) is the leading cause of death worldwide, and the Hispanic population has a significantly higher risk of developing CVD. In this study, we measured plasma cytokine levels, lipidomic data, and cardiac magnetic resonance imaging (CMRI) in individuals from the San Antonio Family Heart Study (SAFHS). Statistical analysis was implemented to determine the heritability, the correlation between cytokine expression and cardiac phenotype and lipid and cardiac phenotype.

Methods: We analyzed frozen plasma samples from 254 participants using the MILLIPLEX Human Cytokine/Chemokine/Growth Factor Panel A Magnetic Bead Panel. The panel included GM-CSF, IFNg, IL-1ß, IL-2, IL-4, IL-5, IL-6, …

Symbiotic Aspergillus Terreus Alleviates Drought And Waterlogged Stress In Zea Mays L., Hazrat Ali, Fayaz Asad, Naveen Dilawar, Vasila Sharipova, Imtiaz Ahmad, Abida Zeb

Turkish Journal of Botany

The interaction concerning rhizospheric fungi and plants is essential for enhancing plant resilience in the face of abiotic stress conditions. This study investigated the effects of the rhizospheric fungus Aspergillus terreus on maize (Zea mays L.) growth under both drought and waterlogging conditions. Our findings confirmed that inoculation with A. terreus mitigated the adverse effects of drought and waterlogging conditions on maize growth. Plants treated with Aspergillus terreus (A. terreus) exhibited enhanced root and shoot length, fresh and dry weight as well as enhanced chlorophyll content in plants compared to control, under stress-related conditions. Compared to the control group, A. …

Advanced Deep Learning Approaches For The Accurate Classification Of Phallaceae Fungi With Explainable Ai, Eda Kumru, Fati̇h Eki̇nci̇, Koray Açici, Ömer Burak Altindal, Mehmet Serdar Güzel, Ilgaz Akata

Turkish Journal of Botany

In this study, deep learning (DL)-based models were developed for the classification of 5 fungal species from the Phallaceae family (Clathrus ruber, Colus hirudinosus, Mutinus caninus, Phallus impudicus, and Pseudocolus fusiformis). ConvNeXT achieved the highest performance with 98% accuracy, 98% precision, 98% recall, and 98% F1-score. EfficientNetB4 and Xception also performed well with 96% accuracy. In contrast, lighter models such as MobileNetV2 and MixNet S showed significantly lower accuracy (84% and 80%, respectively). Among the explainable artificial intelligence (XAI) techniques, gradient-weighted class activation mapping (Grad-CAM) and Integrated Gradients showed that high-accuracy models focus more effectively on biologically meaningful regions. In …

Erratum To “Anatomical And Palynological Studies On Turkish Primula Taxa (Primulaceae) And Their Taxonomic And Phylogenetic Significance [Turkish Journal Of Botany 49 (4) 2025 325-348 ] ”, Deni̇z Ulukuş, Esengül Özkaymakoğlu, Rebecca Stubbs, Hüseyi̇n Baykal, Kami̇l Coşkunçelebi̇, Osman Tugay, Barbara Keller, Elena Conti, Ferhat Celep

Turkish Journal of Botany

This erratum addresses an error concerning Figure 5 in the original published version of this article. During the typesetting process, Figure 5 was partially omitted, resulting in an incomplete figure being published.To correct this oversight and ensure the accuracy of the scholarly record, the complete Figure 5 is provided below for reference.

Link to the original article: https://doi.org/10.55730/1300-008X.2866

Comparative Analysis Of The Complete Chloroplast Genome Of The Rare Endemic Palm Pinanga Arinasae Witono From Bali, Indonesia, Ni Putu Sri Asih, Risha Amilia Pratiwi, Istiana Prihatini, Paramita Cahyaningrum Kuswandi, Evy Yulianti, Arief Priyadi

Turkish Journal of Botany

Pinanga arinasae is an endangered species endemic to Bali, Indonesia. Our study aims to characterize its chloroplast genome, compare it with other chloroplast genomes, including its phylogenetic position within the Arecoideae subfamily, and identify potential molecular markers. P. arinasae chloroplast genomes characterization involves Illumina-based sequencing, de novo genome assembly, gene annotation, amino acid frequency, codon usage pattern analysis, and Simple Sequence Marker (SSR) identification. Comparative analysis include phylogenetic tree reconstruction, comparison of amino acid frequency, codon usage pattern, SSR number, inverted repeat junction arrangement, genome length, GC content, and gene number. Nucleotide diversity is calculated to identify substitution markers. The …

Development And Validation Of An Analytical Method For Determination Of Bongkrekic Acid In Biofluids For Toxin Monitoring, Ying-Tzu Shieh, Te-I Weng, Ju-Yu Chen, I-Ting Wang, Kevin Shu-Leung Lai, Chia-Mo Lin, Chu-Yun Teng, Guan-Yuan Chen

Journal of Food and Drug Analysis

Bongkrekic acid (BKA) poisoning is a severe foodborne illness with a high mortality rate. This study aimed to identifyBKA in postmortem tissues from poisoning victims in Taiwan and to develop a reliable analytical method for detectingBKA in biofluids to aid clinical diagnosis and treatment. BKA was identified in postmortem samples using high-reso-lution mass spectrometry (HRMS) and confirmed with an independent ultrahigh-performance liquid chromatographycoupled with tandem mass spectrometry (UHPLC-MS/MS) method. To meet clinical needs, a UHPLC-MS/MS methodwas developed and validated for BKA detection in plasma and urine. Method optimization included adjustments to ionsource conditions for multiple reaction monitoring (MRM) transitions and …

The Rhythm Of Decline: Circadian Disruption In Neurodegeneration, Jeewanjot Singh, Devinder Kumar, Jasleen Kaur, Amanpreet Singh

Journal of Food and Drug Analysis

Alzheimer's disease (AD) is a progressive neurodegenerative disorder with a multifactorial etiology involving genetic,environmental, and metabolic factors. Among these, circadian rhythm disruption has emerged as a crucial but under-explored contributor to disease progression. The circadian system, regulated by the suprachiasmatic nucleus (SCN),controls essential physiological functions such as the sleep-wake cycle, metabolism, and neuroendocrine signaling.Disruption of this system has been increasingly linked to key pathological features of AD, including amyloid-betaaccumulation, tau hyperphosphorylation, and neuroinflammation. This review critically examines the mechanistic roleof circadian misalignment in AD by analyzing studies on sleep disturbances, SCN degeneration, metabolic dysregu-lation, clock gene polymorphisms (BMAL1, CLOCK, PER, …

Be Your Own Brain Advocate: Why Older People Should Request Routine Cognitive Testing, Josey M. Batura, Elizabeth B. Fauth

All Current Publications

Your primary care physician can conduct regular screenings and track cognitive changes; however, patients may need to advocate for and request testing. If there is noticeable loss in cognitive function, you may benefit from a more accurate diagnosis and a treatment plan or care plan from a medical specialist. Detecting cognitive changes early is better than knowing too late.

Reeds Run Amok: A Practical Guide To Managing Phragmites-Invaded Wetlands, Christine Rohal, Keith Hambrecht, Chad Cranney, Karin M. Kettenring

All Current Publications

Phragmites australis (common reed or simply “phragmites”) is a tall-statured, highly productive wetland grass. It spreads rapidly, often displacing native plants and degrading critical habitat for shorebirds and waterfowl by reducing the availability of nesting, loafing, and foraging areas. Phragmites also consumes large amounts of water, adding pressure to already scarce water resources. Additionally, the accumulation of standing dead biomass can be a fire hazard. Phragmites makes large areas of wetlands inaccessible to both wildlife and humans. This guide provides guidance on managing phragmites.

Amino Acids And Cart Distinguish A-Β+ Ketosis-Prone Diabetes From Type 1 And Type 2 Diabetes During Hyperglycemic Crises, Farook Jahoor, Jean W Hsu, Kelly R Keene, W Frank Peacock, Xiaofang Huang, Danielle Guffey, Jinyoung Byun, Rasmus Bennet, Ake Lernmark, Mustafa Tosur, Ashok Balasubramanyam

Children’s Nutrition Research Center Staff Publications

Context: When clinically stable, patients with A-β+ ketosis-prone diabetes (KPD) manifest unique markers of amino acid metabolism. Biomarkers differentiating KPD from type 1 (T1D) and type 2 diabetes (T2D) during hyperglycemic crises would accelerate diagnosis and management.

Objective: Compare serum metabolomics of KPD, T1D, and T2D patients during hyperglycemic crises, and utilize classification and regression tree (CART) modeling to distinguish these forms of diabetes.

Methods: At an urban hospital emergency center, adults with KPD, T1D, and T2D during hyperglycemic crises with or without diabetic ketoacidosis (DKA), and healthy controls, underwent comparisons of serum metabolite and hormonal profiles and CART analyses. …

A Single Center Study Of The Symbol Digit Modalities Test As A Screening Tool For Cognitive Impairment In Parkinson’S Disease, Daniyell Thomason, Morganne Manuel, Shannin Moody, Jesus Lovera, Brain Copeland, Deidre Devier

School of Medicine Faculty Publications

Background: Parkinson’s Disease (PD) can include physical signs and possibly cognitive impairment, resulting from the convergence of pathologicalprocesses involving dopaminergic dysfunction, accumulation ofalpha-synuclein, cholinergic deficits, and disruption of otherneurotransmitter systems. We used screening tests to evaluate thecharacteristics of cognitive performance in patients with PD and to assess their validity compared tothe Montreal Cognitive Assessment (MoCA). Methods: This is a natural history study of participants with PD and controls screened for possible cognitive impairment using the MoCA, Symbol Digit Modalities Test (SDMT), and King-Devick (KD). The groups were compared on performance and then factors associated with cognitive performance (age, diagnosis, and …

Warming Induces Unexpectedly High Soil Respiration In A Wet Tropical Forest, Tana E. Wood, Colin Tucker, Aura M. Alonso-Rodríguez, M. Isabel Loza, Iana F. Grullón-Penkova, Molly A. Cavaleri, Christine S. O'Connell, Sasha C. Reed

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Tropical forests are a dominant regulator of the global carbon cycle, exchanging more carbon dioxide with the atmosphere than any other terrestrial biome. Climate models predict unprecedented climatic warming in tropical regions in the coming decades; however, in situ field warming studies are severely lacking in tropical forests. Here we present results from an in situ warming experiment in Puerto Rico, where soil respiration responses to ⁺4 ^oC warming were assessed half-hourly for a year. Soil respiration rates were 42-204% higher in warmed relative to ambient plots, representing some of the highest soil respiration rates reported for any …

Clinical Applications Of Probiotics: A Comprehensive Review Of Benefits And Challenges, Riyam Wissam Hassan

Maaen Journal for Medical Sciences

Probiotics are beneficial microorganisms that help balance microbes in intestines and promote growth beneficial bacteria, they vary between bacteria, yeasts, and fungi and they are helpful to human health when taken in adequate and suitable amounts. In addition to maintaining intestinal health and help with digestion and absorption, also inhibiting development and preventing spread of harmful microorganisms. It exists in different forms, in the intestines and in the foods, products fermented, and in the pharmaceutical supplements. Because human health depends largely on the interaction between humans and these microorganisms known as probiotics, it has found that these organisms have vital …

Two New Species Of Uroplectes Peters, 1861 (Scorpiones, Buthidae) From Somaliland And Mozambique, František Kovařík

Euscorpius

Two new species, Uroplectes elmii sp. n. from Somaliland and U. mossambicensis sp. n. from Mozambique are described, fully illustrated with color photos showing their morphology. Both species are similar to Uroplectes fischeri (Karsch, 1879) from which they differ mainly in finger dentition (Uroplectes elmii sp. n.) and strongly reduced tibial spurs on legs III–IV (U. mossambicensis sp. n.). Uroplectes elmii sp. n. is also compared with U. pardii Kovařík, 2003, from which it differs mainly by extremely reduced to absent metasomal punctation. A distribution map of all …

Baking Degree Discrimination And Quality Prediction Of Tieguanyin Oolong Tea Based On Near-Infrared Spectroscopy, Lizhu Huang, Yun Bian, Zhenfeng Li, Xianfeng Li, Chunfang Song

Journal of Food Science and Biotechnology

[Objective ] This study aims to assess the quality of Tieguanyin oolong tea during the baking process.[Method ] Near-infrared spectroscopy was used for non-destructive detection of Tieguanyin oolong tea during the baking process and chemometrics was employed to analyze the changes in the intrinsic quality of the Tieguanyin oolong tea.Spectral preprocessing and dimensionality reduction were conducted for the near-infrared spectral data.Support vector machine (SVM ) and back propagation neural network (BPNN ) were adopted to construct discrimination models for the baking degree of Tieguanyin oolong tea.Combining the near-infrared spectral data with intrinsic quality data,partial least squares regression (PLSR ) was …

Metagenomic Characterization Of Gut Microbiota In Children With Autism Spectrum Disorder: Microbial Signatures And Modulation By Anti-Inflammatory Diet And Probiotics, Marysol Valencia-Buitrago, Rodrigo Dias Oliveira-Carvalho, Valbert Cardoso, Jessica Triviño-Valencia, Luisa Matilde Salamanca-Duque, Vanessa Martínez-Díaz, Jovanny Zabaleta, Narmer Fernando Galeano-Vanegas, Carlos Andrés Naranjo-Galvis

School of Medicine Faculty Publications

Background: Autism Spectrum Disorder (ASD) is increasingly associated with alterations in gut microbiota, intestinal permeability, and immune dysregulation. However, integrative studies exploring these mechanisms in Latin American populations are lacking. Objective: To characterize gut microbiota profiles in Colombian children with ASD and evaluate the effects of two microbiota-targeted interventions, an anti-inflammatory diet and a probiotic formulation, on microbial diversity and taxonomic composition. Methods: In a two-phase study, shotgun metagenomic sequencing was performed on fecal samples from 23 children with ASD and 7 typically developing (TD) controls. In the second phase, 17 children with ASD were randomized to receive a 12-week …

Bayesian Clustering Prior With Overlapping Indices For Effective Use Of Multisource External Data, Xuetao Lu, J Jack Lee

Faculty, Staff and Student Publications

The use of external data in clinical trials offers numerous advantages, such as reducing enrollment, increasing study power, and shortening trial duration. In Bayesian inference, information in external data can be transferred into an informative prior for future borrowing (i.e. prior synthesis). However, multisource external data often exhibits heterogeneity, which can cause information distortion during the prior synthesizing. Clustering helps identifying the heterogeneity, enhancing the congruence between synthesized prior and external data. Obtaining optimal clustering is challenging due to the trade-off between congruence with external data and robustness to future data. We introduce two overlapping indices: the overlapping clustering index …

Low Energy Availability Prevalence, Dietary Habits, And Sleep In Female Army Rotc Cadets, Hannah K. Eberhardt, Brandon D. Willingham, Matthew F. Brisebois, Patrick G. Saracino

International Journal of Exercise Science

International Journal of Exercise Science 18(6): 1030-1046, 2025. Low energy availability (LEA) results in numerous health and performance decrements. While a high prevalence of LEA and sleep disturbance has been observed in male Army Reserve Officers’ Training Corps (ROTC) cadets, no data exists in females. This study aimed to determine LEA prevalence, dietary habits, and sleep quantity and quality in female U.S. ROTC cadets. Following an overnight fast, ten cadets (22±4 yrs, 166.0±6.1 cm, 67.1±9.1 kg, 26.1±6.2% body fat, 49.2±4.8 kg fat-free mass (FFM)) had their body composition and resting metabolic rate measured. Validated questionnaires assessed LEA symptoms and sleep. …

Structural Analysis Of Pseudomonas Phage Dev Virion-Associated Rna Polymerase (Gp71), James Scherer

All ETDs from UAB

DEV is a Pseudomonas aeruginosa bacteriophage part of a newly reclassified genus called Schitoviridae. This group of bacteriophages is also referred to as “N4-like” phages, after the prototypical Escherichia coli phage N4, originally isolated from sewage water in 19661. N4, and other phages in the group, contain a large, virion-associated RNA polymerase (vRNAP). This vRNAP is vital to the proliferation of the phage, as it performs the transcription of the early gene products and potentially acts as a motor that helps eject the viral genome into the host bacteria. In DEV, the vRNAP is also known as gene product 71 …

Infusion Of Blood From Young And Old Mice Modulates Amyloid Pathology, Matias Pizarro, Ruben Gomez-Gutierrez, Ariel Caviedes, Catalina Valdes, Ute Woehlbier, Cristian Vargas, Mauricio Hernandez, Claudia Duran-Aniotz, Rodrigo Morales

Faculty, Staff and Student Publications

Alzheimer's disease (AD) is a neurodegenerative disease characterized by the accumulation of misfolded proteins in the brain. Recently, the impact of blood components in the progression of this disease has come to attention. This study investigates the effects of infusing blood from young and old wild-type mice into transgenic mice that model AD brain amyloidosis. Impaired memory and Aβ accumulation were observed in mice infused with blood from old donors. A proteomic analysis in the brain of these mice identified alterations in components related to synaptogenesis and the endocannabinoid system. The α2δ2 protein, associated with neuronal calcium regulation, was validated …

Marital Conflict And Male Depression: The Role Of Emotional Withdrawal And Hostility, Nicolas Enzo Mouhsen

Family Perspectives

This literature review investigates the relationship between marital conflict and male depression, focusing on emotional withdrawal and spousal hostility as key contributing factors. Male depression, often underreported due to differences in symptom expression such as anger and irritability, is explored in the context of marital dynamics. Emotional withdrawal, characterized by avoidance behaviors during conflict, is particularly prevalent among men and linked to rigid gender role perceptions. This behavior correlates with increased depressive symptoms and reduced well-being. Additionally, spousal hostility, including verbal aggression and criticism, exacerbates male depression through both the perception of aggression from a partner and self-awareness of hostile …

Lineage-Associated Zinc Metalloprotease B And Its Impact On Cardiac Damage Elicited During Invasive Pneumococcal Disease, Jennifer Nichelle Luck

All ETDs from UAB

During invasive disease, certain strains of Streptococcus pneumoniae (Spn) can invade the myocardium, damaging cardiomyocytes and predisposing patients to life-threatening cardiac complications. To identify genetic loci involved in pneumococcal cardio-virulence, we performed a bacterial genome-wide association study using 825 genomes corresponding to 17 distinct Spn lineages associated with varying rates of cardiac complications during hospitalization for pneumonia. This led to the identification of an allele of zmpB, the gene encoding Zinc metalloprotease B (ZmpB). Infection of mice with a ZmpB deficient mutant, i.e., TIGR4ΔzmpB, found that ZmpB was required to form foci of infection in the heart, i.e., cardiac microlesions. …

Winter Supplementation Of Beef Cows In The Intermountain West, David Secrist

All Current Publications

Feed costs are the most significant expense of most ranching operations in the Intermountain West. Year-round grazing opportunities, hay cost and availability, calving season, cow size, milk production, and feeding logistics are all considerations in a supplementation program. The key to effective winter feeding is to balance the cost/benefit ratio of the supplementation programs while meeting nutritional demands at a minimal cost.

Breath Acetone As A Biomarker For Concussion, Allyn Abadie

All ETDs from UAB

Concussions represent a critical public health concern, affecting millions annually yet remain challenging to diagnose and manage. Concussions involve a range of often invisible signs and symptoms. Traditional assessments rely heavily on subjective symptom reporting, with limited objective data which may complicate return-to-play decisions. Objective physiological biomarkers are needed to complement traditional methods, detect subtle disruptions, and improve decision-making. Following concussion, the brain undergoes a neurometabolic cascade involving disrupted glucose utilization, ionic imbalances, neurotransmitter release, and reduced cerebral blood flow. This cascade creates a metabolic crisis, potentially shifting energy metabolism toward alternative substrates such as ketones. Breath acetone, a measurable …

Structural Basis For Promoter Recognition By Pseudomonas Phage Dev Virion Associated Rna Polymerase, Brittney Bird

All ETDs from UAB

Bacteriophage DEV, a member of the Schitoviridae family, encodes a large virion-associated RNA polymerase (vRNAP) and shows significant potential for use in phage therapy. However, many aspects of DEV’s biology remain poorly understood, especially how it regulates transcription once inside the host. Recent work in our lab suggests that gene product 71 (gp71) functions as a DNA-dependent vRNAP. Analogous to the vRNAP of coliphage N4, gp71 likely initiates transcription by recognizing single-stranded DNA templates that contain early gene hairpin promoters. Based on this, my working hypothesis is that specific interactions between gp71 and the DEV early promoters PE1 and PE5 …

Characterizing The Role Of Pneumococcal Surface Protein A And Humoral Immunity To Biofilm Antigens During Streptococcus Pneumoniae Colonization, Jessica Lane

All ETDs from UAB

Streptococcus pneumoniae (Spn), or “the pneumococcus”, is a Gram-positive bacterium that colonizes the upper respiratory tract as a pathobiont. Spn is a deadly human pathogen, and one of the leading etiological agents of community-acquired pneumonia (CAP). One virulence factor of Spn is pneumococcal surface protein A (PspA), a choline-binding protein (CBP) at the surface of the bacteria that interacts with the host environment. Here, we demonstrated a novel role for PspA involving adhesion to dying host nasal epithelial cells via a multimeric complex with host lactoferrin (LF) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH). We found that the PspA-GAPDH complex aggregated the bacteria …

The Hepatic Glucagon Receptor As A Novel Regulator Of Lifespan, Alexander Tate Lasher

All ETDs from UAB

In developed nations the average lifespan has nearly doubled over the last 200 years, and the proportion of humans living into old age is ever increasing. While this is certainly a testament to the effectiveness of modern medicine and infrastructure, it presents a unique challenge to public health. Gains to health have not necessarily kept pace with the gains in lifespan, and the expanding aged population positions age-associated diseases to reach unprecedented prevalence. In light of this challenge, a mechanistic understanding of the aging process is necessary to identify factors that control longevity and to ultimately develop strategies for healthy …

Effect Of Fiber Structure Heterogeneity On The Estimation Of Material Parameters For Cardiac Scar Tissue Mechanics, Desmond Maximilian Flanagan

All ETDs from UAB

Over one million Americans suffer from myocardial infarction (MI) per year. After MI, the heart muscle is replaced by scar, whose mechanical properties play a critical role in outcomes for surviving patients. Previously, Caggiano et al. induced MI in rats, and ex-tracted the scar tissue samples for microscopy and mechanical testing. Building on this, we investigate the effect of incorporating microscopy-derived fiber heterogeneity on the estimation of stress and material parameters. We studied the effect of fiber orientation heterogeneity on the mechanical characteriza-tion of scar tissues using finite element models (FEM) that replicated biaxial tests. We used three constitutive models—Mooney-Rivlin, …

Influenza A Virus Increases Susceptibility To Streptococcus Pneumoniae By Damaging The Airway Epithelium, Erin Yepsen Earnhardt

All ETDs from UAB

Influenza A Virus (IAV) is commonly complicated by secondary bacterial infections with Streptococcus pneumoniae (Spn), leading to increased morbidity and mortality. Recent work from our lab demonstrates that an IAV-induced loss of cystic fibrosis transmembrane conductance regulator (CFTR) in the airway disrupts the rheostatic properties of the airway surface liquid (ASL). In cystic fibrosis, caused by mutations in the CFTR gene, there is an increase in the bacterial burden of the airway. However, the underlying mechanisms and damage caused by IAV-induced CFTR dysfunction in the airway remains unknown. Using a primary differentiated human bronchial airway epithelial cell culture (HBEC) system, …

The Role Of The Glycerol Metabolism Regulator Glpr On Pseudomonas Aeruginosa’S Physiology, Nicholas Jordan Evans

All ETDs from UAB

Chronic infections with Pseudomonas aeruginosa are a leading cause of morbidity and mortality in people with cystic fibrosis. P. aeruginosa persists in the CF lung through adaptations, including altering the expression of metabolic genes to acquire nutrients that are abundant in the CF airway. Glycerol in the airway is imported and metabolized by proteins encoded in the glp regulon, which is regulated in part by GlpR. The loss of GlpR was previously shown to increase biofilm development in a P. aeruginosa CF isolate compared to a wound isolate. In the first half of this work, we investigated the influence that …