Digital Commons Network^™

Developing Machine Learning Models For Selection Of Management Zones, Sravanthi Bachina

Electronic Theses and Dissertations

Soil sampling and analyses play a crucial role in optimizing nutrient management and enhancing crop productivity. However, collecting representative samples across diverse landscapes is challenging due to knowledge gaps about spatial variability of soil properties, large fields, multiple samples, and analysis costs. Collecting soil samples based on the management zones can help farmers gather precise information about soil properties with fewer samples. Recent developments in precision agriculture and machine learning. This study aimed to develop machine learning models that can learn, analyze, and refine landscape and soil properties data for automated selection of soil sampling zones and generating prediction maps. …

Forensic Archaeology Protocols For Wildfires And Fire Related Scenes, Erik Schulz

Nebraska Anthropologist

Forensic Archaeology Protocols for Wildfires and Fire-Related Scenes

Forensic archaeology is a relatively new area of study and focuses on the medical legal aspects of archaeology. This paper will focus on how forensic archaeology should be used for wildfire and other fire-related fatalities or investigations, what happens to bone when exposed to heat, what protocols should be in place and how an excavation should look, and finally the challenges of fire-related investigations. This report will focus on the larger scale of the investigation and will be using several sources from different wildfire and fire fatality reports.

The Relationship Of Macronutrient Intake With Growth In Children With Type 1 Diabetes Mellitus, Jessica L. Freeling

Electronic Theses and Dissertations

Child growth, a sensitive metric of overall health, results from the intricate interplay of nature and nurture. While the importance of nutrition in child growth is well established, growth trajectories exhibit substantial individual variability, influenced by sex and age, and often characterized by nonlinear patterns. Inadequate nutrition or disease can hinder growth, with potential for recovery upon proper nutrition or acute disease resolution. However, chronic disease or persistent malnutrition may lead to permanent growth perturbation. Notably, before the advent of insulin, chronic stunting and wasting were hallmarks of Type 1 diabetes mellitus (T1DM), though the specific impacts under modern standard …

(Plant)Ing Traditional Roots: Exploring An Impact Of Environmental Shifts On Traditional Phytotherapy Practices In The Cusco Region Of Perú, Nicole Elizabeth Wilmot

Undergraduate Honors Theses

This thesis investigates the potential outcomes of environmental shifts on plant-based medical practices in the Cusco region of Peru. Located in the Andes mountain range, at a high elevation, the environment varies immensely, specifically in the various types of native plants in the region. Historically, using plants as natural forms of medicine or healthcare has been deeply rooted in many indigenous communities, traditions, and cultures globally. Environmentally, there have been potential changes and shifts in temperature, water, and soil that affect the nutrition and health of plants to maintain their beneficial properties. Due to various factors, adaptations or shifts to …

The Influence Of Habitual Physical Activity And Sedentary Behavior On Objective And Subjective Hot Flashes At Midlife, Sarah Witkowski, Quinn White, Sofiya Shreyer, Daniel E. Brown, Lynette Leidy Sievert

Exercise and Sport Studies: Faculty Publications

The years surrounding the transition to menopause are marked by multiple challenges to health. Hot flashes are a commonly reported symptom of women at this time and their frequency has been associated with disease risk. Regular physical activity and reduced sedentary time are recommended for health and wellbeing. However, the effect of physical activity and sedentary behavior on hot flashes remains unclear. OBJECTIVE: The purpose of this study was to evaluate relationships between physical activity, sedentary time and hot flashes during both waking and sleeping periods using concurrent objective and subjective measures of hot flashes in midlife women. METHODS: Women …

Acute Increases In Physical Activity And Temperature Are Associated With Hot Flash Experience In Midlife Women, Sarah Witkowski, Quinn White, Sofiya Shreyer, Randi L. Garcia, Daniel E. Brown, Lynnette Leidy Sievert

Exercise and Sport Studies: Faculty Publications

Objective: This study determined the association between acute changes in physical activity, temperature and humidity and 24-hour subjective and objective hot flash experience.

Methods: Data collection occurred during the cooler months of the year in Western Massachusetts (October-April). Women aged 45-55 across 3 menopause stages (n=270) were instrumented with ambulatory monitors to continuously measure hot flashes, physical activity, temperature and humidity for 24-hours. Objective hot flashes were assessed via sternal skin conductance, and subjective hot flashes were recorded by pressing an event marker and data logging. Physical activity was measured with wrist-worn accelerometers and used to define sleep and wake …

Associations Between Urine Specific Gravity And Race/Ethnicity At The Population Level: Implications For Hydration Status Categorization, Ian P. Winter, Brain K. Ferguson, Patrick B. Wilson

Exercise Science Faculty Publications

Objective

We aimed to evaluate how urine specific gravity (USG) and rates of supposed hypohydration vary by race/ethnicity, and to examine how adjustment for several important factors impacts estimated USG.

Methods

Using the National Health and Nutrition Examination Survey, this cross‐sectional study evaluated a total of 4195 (2098 female, 2097 male) Americans and categorized them as supposedly hypohydrated (USG≥1.020) or not using spot urine samples. USG and prevalence of supposed hypohydration were compared across racial/ethnic groups, separately by gender. The analyses considered the impact of urine creatinine, body composition, age, dietary nutrients, and physical activity.

Results

Differences in supposed hypohydration …

State Barrier Fence - Esperance Extension Project Overview 2024, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

Western Australia’s State Barrier Fence plays an important role in protecting landholders inside the fence by preventing the movement of animal pests, including wild dogs and emus, from pastoral areas into the agricultural regions. It is a state asset which is managed by the Department of Primary Industries and Regional Development.

The original fences (numbers 1, 2 and 3) were constructed between 1902 and 1907. Originally known as the Rabbit Proof Fences, it has also been known as the State Vermin Fence, the Emu Fence and now the State Barrier Fence. Since 2010, the fence has been upgraded to wild …

Donald Griffin: A Visionary In Science And Consciousness, Charles Foster

Animal Sentience

Carolyn Ristau’s (2024) timely biography reviews Donald Griffin’s pioneering ideas with depth and historical perspective, describing Griffin’s approach to science, his openness to interdisciplinary insights, and his bold stance on consciousness. Ristau’s work highlights Griffin’s relevance to contemporary debates on consciousness and natural selection.

Skipresnet: Crop And Weed Recognition Based On The Improved Resnet, Wenyi Hu, Tian Chen, Chunjie Lan, Shan Liu, Lirong Yin

Electrical & Computer Engineering Faculty Publications

Weeds have a detrimental effect on crop yield. However, the prevailing chemical weed control methods cause pollution of the ecosystem and land. Therefore, it has become a trend to reduce dependence on herbicides; realize a sustainable, intelligent weed control method; and protect the land. In order to realize intelligent weeding, efficient and accurate crop and weed recognition is necessary. Convolutional neural networks (CNNs) are widely applied for weed and crop recognition due to their high speed and efficiency. In this paper, a multi-path input skip-residual network (SkipResNet) was put forward to upgrade the classification function of weeds and crops. It …

Comparing The Prevalence Of Stereotypic Behaviors And Enrichment Use In Rhesus (Macaca Mulatta) And Japanese Macaques (M. Fuscata), Jesscia Oscavich

All Master's Theses

To improve captive nonhuman primates’ welfare, particularly those utilized in biomedical and behavioral research, it’s important to understand their behavior. Rhesus (Macaca mulatta) and Japanese macaques (M. fuscata) are two closely related species that are commonly utilized in biomedical and behavioral research. In this study, I compared the frequency of stereotypic behaviors, which are abnormal repetitive behaviors that are apparently non-functional, and enrichment use among four groups of each species. Stereotypic behaviors were divided into motor, which the animal performed while active, and self-directed stereotypies, which the animal performed towards themselves. Enrichment use was divided into …

The Auricular Surface Of Chimpanzees (Pan Troglodytes) As An Indicator Of Age, Kalila Garrison

All Master's Theses

Great ape skeletal remains are scarce and their use in biological profile estimations has been limited. Skeletal remains analysis provides key demographic information and ecological context to the individual. Chimpanzees (Pan troglodytes) share skeletal morphological characteristics with humans, and this study seeks to understand if two noninvasive methods using the auricular surface of the ilium to age human skeletal remains could be applied to chimpanzees. The sample consisted of n = 8 individual left auricular surfaces from known age groups of both sexes. Firstly, the Buckberry and Chamberlain Method assigns numerical values to five different traits on the auricular …

Late Holocene Fire History Reconstruction Of Beaver Lake In The Northwest Lowlands Of The Olympic Peninsula, Grace Mckenney

All Master's Theses

Fire is an essential component of the landscapes and forests of the Pacific Northwest, including the temperate rainforests of the Olympic Peninsula. Previous fire history reconstructions from the peninsula show that fire return intervals varied throughout the postglacial period, primarily in response to climatic changes and corresponding shifts in vegetation. However, much less is known about the fire history of the low-elevation forests of the Olympic Peninsula and the role of cultural fire regimes in these environments. The purpose of this study was to reconstruct the paleoenvironmental history of a low-elevation study site, Beaver Lake, located in the northwestern part …

Uncovering Our Origins: How New Technologies Can Be Used To Interpret Our Ancient Past, Amelia Merithew

The Synapse: Intercollegiate science magazine

No abstract provided.

Hydrologic Pathways Of A Northern Hardwood Catchment In The Great Lakes Basin Using End Member Mixing Analysis, Cory C. Burkwald

Dissertations, Master's Theses and Master's Reports

This study investigated the seasonality of hydrologic pathways, the role of wetlands in streamflow generation, and how hydrologic pathways affect the export of nutrients by streamflow in the Sturgeon River using endmember mixing analysis. The results indicated that streamflow consists of three main components: shallow subsurface water from wetland soils, shallow groundwater, and surface runoff from precipitation. Snowmelt plays a dominating role in regulating stream water chemistry (~80% volume at peak) during the snowmelt season and likely also after that. Wetland soils store snowmelt, together with rainwater though the fraction is unknown, and then gradually release through summer in the …

Conceptualizing Sustainability And Resilience In Value Chains In Times Of Multiple Crises—Notes On Agri-Food Chains, Alexander Follmann, Peter Dannenberg, Nina Baur, Boris Braun, Grit Walther, Amelie Bernzen, Jan Börner, Michael Brüntrup, Martin Franz, Emmanuel Sulle

Arusha Climate and Environmental Research Centre

Global and regional agri-food value chains feed societies and are an income source for hundreds of millions of farmers around the world. They are also target areas for action to achieve a global sustainability transformation. Agri-food chains are highly vulnerable in the context of multiple crises, including the global environmental crisis, geopolitical fragmentation, armed conflicts and wars, and the aftermath of the COVID-19 pandemic. Measures to increase chain resilience are widely discussed; however, some such measures contradict sustainability measures. While there has been considerable research on the sustainability and resilience of agri-food chains, few studies have integrated both perspectives or …

Descriptive Report On Dietary Remains From Aztec And Salmon Ruins Coprolites, Karl J. Reinhard

Karl Reinhard Publications

This report focuses only on dietary results from the Aztec Ruins and Salmon Ruins coprolites. The parasitological analysis was completed in 2018 and was the focus of several papers that were summarized by Camacho and Reinhard (2020). This did not include DNA analysis. The coprolites from these sites are not appropriate sources of DNA testing.

The main conclusion of the analysis are:

1) Two very distinct plant spectra are represented in Aztec Ruins West (ARW) room 219 and room 225.

2) The three contexts of ARW room 219 show interesting variation in food selection, however these are small samples.

3) …

Recent Beak Evolution In North American Starlings After Invasion, Julia M. Zichello, Shelagh T. Deliberto, Paul Shrewsbury, Agnieszka A. Pierwola, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

European starlings are one of the most abundant and problematic avian invaders in the world. From their native range across Eurasia and North Africa, they have been introduced to every continent except Antarctica. In 160 years, starlings have expanded into different environments throughout the world, making them a powerful model for understanding rapid evolutionary change and adaptive plasticity. Here, we investigate their spatiotemporal morphological variation in North America and the native range. Our dataset includes 1,217 specimens; a combination of historical museum skins and modern birds. Beak length in the native range has remained unchanged during the past 206 years, …

Survival Of Translocated Coyotes In The Chicago Metropolitan Area, Usa, Charlotte R. Milling, Chris Anchor, Stanley D. Gehrt

Human–Wildlife Interactions

For nuisance animals, the general public perceives translocation to be a humane alternative to lethal control measures, but survival of translocated wildlife is often quite low due in part to increased movement post-release. Thus, for common species whose relocation generally serves a social rather than conservation purpose, translocation might not be correctly characterized when presented as nonlethal. We quantified release site fidelity and survival of coyotes (Canis latrans) fitted with very high frequency radio-collars and translocated within the Chicago Metropolitan Area, Illinois, USA, from 2000 to 2006. We also compared survival for 14 weeks post-collaring for our translocated …

Unlv Title Iii Aanapisi & Mcnair Scholars Institute Research Journal 2024, Jesica Godinez-Paredes, Kian Hassankhan, Apia Hickman, Robin Ruth Kee, Kevin Ayala Pineda, Briana Melendez, Kalli Ramos, Saturn L. Reyes, Fabian Leija, Selena Pepe, Silva Topchyan, Celeste Ainsley, Mayra Arzate, Jessica Balistreri, Zantana Ephrem, Mirella Jasso, Karl Panou, Nichole Pelaez, Miklo Alcala, Akshay Dave, Mey Mey Heng, Michael Finkle, Janessa Montenegro, Reynafe Naol Aniga, Victor Mejia, Angelica G. Diaz, Anayeli Flores-Garibay, Kari Lee Joe Goold, Samantha Hernandez, Lianelys Cabrera Martinez, Caitlin Reynolds, Kimberly N. Usbeck, Abdulrahman Alahdal, Angelica Diaz, Willaine Mae Kahano, Raquel Jackson, Cecia Ruiz-Hernandez, Kers Ung-Watson, Yessenia Henriquez, Vanessa Marie Booth, Alexia Brown, Darlyn Magana, Bianca Navarro, Nicholas Pereira, Gia Renemae Calip, Lucky Heng, Ralph Sagun, Lucas Abreu, Alexandra Maria Acosta, Tristan Benally, Cosset Hernandez Pena, Adrian Montenegro, Cierra Paaaina-Daquioag, Nicole Torosian, Tracy Fuentes, Julissa Martinez, Medina Mcallister, Michal Newhouse-Van Vlerin, Tiria Carr, Nima Abkenar, Isabella Aceituno, Yuhan Bi, Victoria Campos, Melika Cummings, Zachary J. Johnigan, Alexis Sotolongo-Marin

McNair Journal

Journal articles based on research conducted by undergraduate students in the AANAPISI, LSAMP, and McNair Scholars Program.

Table of Contents

About AANAPISI

Dr. Chris Heavey, Interim President

Dr. Keith Rogers, Vice President for Student Affairs

Ms. Zhanna Aronov, Associate Vice President for Retention & Outreach

Volume 15, Connor Thompson, Emily Steffenhagen, Emily Robertson, Luis Fernando Dos Reis, Emily Farmer, Samuel Villa, Robert Allison, Zachary Chessor, Megan Borden, Austin Burnett, Larry W. Grant Jr., Tristan Marowski, Emma Moore, Pearl Siff

Incite: The Journal of Undergraduate Scholarship

Introduction Dr. Amorette Barber, Director, Office of Student Research

From the Editor Dr. Hannah Dudley-Shotwell

Artist’s Statement Connor Thompson

On Mentorship Dr. John Miller

The Meat of the Matter: Alien, Human, and Animal in Terry Bisson’s “They’re Made Out of Meat” by Emily Steffenhagen

“Please REBLOG!”: An Ethical Analysis of Doxxing, Internet Vigilantism and Racists Getting Fired by Emily Robertson

Journaling: Paper Has More Patience Than People by Luis Fernando Dos Reis

The Effects of Climate Change on the Archaeological World by Emily Farmer

Lowered Seat Height Does Not Impair Wingate Performance in Untrained Cyclists by Samuel Villa, Robert Allison, …

Evaluation Of Alternative Methods For Dna Recovery Of Compromised Skeletal Remains, Ciara N. Rhodes

Theses and Dissertations

Skeletal remains frequently serve as the sole source of genetic material available for developing a profile in cases concerning unidentified human remains or mass casualties. Nevertheless, as unidentified skeletal remains age and are exposed to uncontrolled environmental conditions, the success rates of conventional methods of bone analysis diminish significantly. The physical and mechanical processing of skeletal remains into fine powder for DNA isolation and downstream analysis can substantially impact the quality and quantity of recoverable genetic information. This concern may be exacerbated when dealing with degraded forensic skeletal remains. Few studies have explored whether pulverization of bone samples contributes to …

The Energetics Of Seasonality In Wild Diademed Sifaka (Propithecus Diadema): A Technical And Biological Validation Of Fecal Triiodothyronine Radioimmunassay, Casey Farmer

Graduate Research Theses & Dissertations

The energetic state of an animal has vital consequences for its fitness, but it can be difficult to detect through behavioral observations. The development of techniques to determine an animals’ energetic state non-invasively would allow conservation planners to rapidly assess the energy balance and conservation potential of individuals, groups, and populations. Thyroid hormones like triiodothyronine (T3) regulate and reflect metabolic state in mammals. T3 is a non-invasive biomarker that can be detected in feces and could potentially be used for this purpose. I perform the first validation of a commercially available T3 radioimmunoassay designed for humans on a wild strepsirrhine …

Repatriation And A Biological Profile Of Indigenous Remains Of West Texas, Haley P. Rebardi

Graduate Student Theses, Dissertations, & Professional Papers

The Native American Graves Protection and Repatriation Act (NAGPRA) was created in response to the injustice, mishandling, looting, and trafficking of Native American remains and cultural artifacts. However, even with the latest amendment in December of 2023, there are still gray areas in the context and language. Notably, an issue with NAGPRA is the act only includes institutions and organizations that receive and are supported by Federal funding. Consequently, the act does not cover private collections. The main concern in these contexts is the lack of communication, awareness, and/or permission with and from descendant tribes or potential descendants when it …

Identification Of Constrained Sequence Elements Across 239 Primate Genomes, Lukas F K Kuderna, Jacob C Ulirsch, Sabrina Rashid, Mohamed Ameen, Laksshman Sundaram, Glenn Hickey, Anthony J Cox, Hong Gao, Arvind Kumar, Francois Aguet, Matthew J Christmas, Hiram Clawson, Maximilian Haeussler, Mareike C Janiak, Martin Kuhlwilm, Joseph D Orkin, Thomas Bataillon, Shivakumara Manu, Alejandro Valenzuela, Juraj Bergman, Marjolaine Rouselle, Felipe Ennes Silva, Lidia Agueda, Julie Blanc, Marta Gut, Dorien De Vries, Ian Goodhead, R Alan Harris, Muthuswamy Raveendran, Axel Jensen, Idriss S Chuma, Julie E Horvath, Christina Hvilsom, David Juan, Peter Frandsen, Joshua G Schraiber, Fabiano R De Melo, Fabrício Bertuol, Hazel Byrne, Iracilda Sampaio, Izeni Farias, João Valsecchi, Malu Messias, Maria N F Da Silva, Mihir Trivedi, Rogerio Rossi, Tomas Hrbek, Nicole Andriaholinirina, Clément J Rabarivola, Alphonse Zaramody, Clifford J Jolly, Jane Phillips-Conroy, Gregory Wilkerson, Christian Abee, Joe H Simmons, Eduardo Fernandez-Duque, Sree Kanthaswamy, Fekadu Shiferaw, Dongdong Wu, Long Zhou, Yong Shao, Guojie Zhang, Julius D Keyyu, Sascha Knauf, Minh D Le, Esther Lizano, Stefan Merker, Arcadi Navarro, Tilo Nadler, Chiea Chuen Khor, Jessica Lee, Patrick Tan, Weng Khong Lim, Andrew C Kitchener, Dietmar Zinner, Ivo Gut, Amanda D Melin, Katerina Guschanski, Mikkel Heide Schierup, Robin M D Beck, Ioannis Karakikes, Kevin C Wang, Govindhaswamy Umapathy, Christian Roos, Jean P Boubli, Adam Siepel, Anshul Kundaje, Benedict Paten, Kerstin Lindblad-Toh, Jeffrey Rogers, Tomas Marques Bonet, Kyle Kai-How Farh

Faculty, Staff and Students Publications

Noncoding DNA is central to our understanding of human gene regulation and complex diseases1,2, and measuring the evolutionary sequence constraint can establish the functional relevance of putative regulatory elements in the human genome3–9. Identifying the genomic elements that have become constrained specifically in primates has been hampered by the faster evolution of noncoding DNA compared to protein-coding DNA10, the relatively short timescales separating primate species11, and the previously limited availability of whole-genome sequences12. Here we construct a whole-genome alignment of 239 species, representing nearly half of …

The Effects Of Scour And Marginal Inundation On Trinity River Invertebrate Biomass And Density With Potential Implications For Juvenile Salmonid Food Resources, Benjamin King

Cal Poly Humboldt theses and projects

Regulated flow releases on the Trinity River in northern California have shifted the timing of high flows from winter to late spring and reduced their magnitude. The timing and extent of scour from high flow events and the timing and duration of marginal (bankside) habitat inundation has shifted as a result. Literature is sparse regarding the effects of these hydrologic alterations on Trinity River benthic macroinvertebrate (BMI) communities, an important food resource for juvenile salmonids. In the 2023 water year, a wet winter coupled with additional flow releases from Lewiston Dam provided the opportunity to analyze the impact of scour …

Evolution Of Primate Vocal Repertoires: Vocal Systems As Embodied Capital For Mediating Within-Group Conflict, Eric Schniter, Mateo Peñaherrera-Aguirre

ESI Working Papers

Life history traits constrain investments in costly neural and somatic embodied capital, potentially shaping the evolution of primate vocal communication systems. This study integrates life history theory with the social complexity hypothesis to test a sequential pathway from longevity to social dynamics to vocal repertoire size, using updated vocal repertoire data for McComb & Semple’s (2005) set of 42 non-human primate species, alongside measures of group size and within-group conflict. We compiled data on vocal repertoire size, within-group conflict, group size, endocranial volume, and maximum longevity, analysing these via Phylogenetic Sequential Canonical Cascade Model and ancestral character reconstructions. …

Cultivating Equity: Harnessing School Garden Education As A Catalyst For Food Justice And Social Change, Maureen Madeleine Callahan

Dissertations and Theses

In the realm of critical pedagogy, state power, and food justice in school garden education, this internship reflection paper delves into the creation and impact of a unique video project. Collaborating with a school garden education organization and a local farm owned by a pair of queer, multiracial women near Portland, Oregon, the study aimed to present K-5 students with farming and environmental insights through a food justice lens. Central inquiries explored the intersection of school garden curriculum and farming knowledge, emphasizing community-building and cultural diversity, farmer-environment interactions, engaging young students, and creating a replicable video format. Rooted in critical …

Comparative Functional And Genomic Analysis Of Protein Targets Of Sexual Selection In Primates, Brianna Ports

Electronic Theses and Dissertations

Sexual selection is driven by the differential reproductive success of individuals, which is influenced by competition for mates and mate choice. In primates, this selective pressure has been attributed to the development of distinct anatomical, physiological, and behavioral characteristics. By employing comparative functional and genomic methodologies, this study aimed to assess the repercussions of primate sexual selection. To better understand the mechanisms driving sexually selected traits, an unbiased genome-wide analysis was used to associate rates of protein evolution with relative testes size and sexual size dimorphism. While previous research focused on the rapid evolution of male reproductive proteins in response …

Determining The Extent Of Pioneer Mangrove Acidification On Intertidal Oyster Reefs, Cindy Whitten, Andres Alatorre, Nicole Campbell, Savanna Freeman, Sydney Henderson, Kate Mclendon, Connor Wright, June Davison, Madison Ganci, Katherine Harris

The Pegasus Review: UCF Undergraduate Research Journal

The Indian River Lagoon (IRL) stretches 251 kilometers along Florida’s east coast and is one of the most biodiverse estuaries in North America. Mosquito Lagoon, the northernmost portion of the IRL, is home to mangroves and intertidal oyster reefs that provide numerous ecosystem services. These two habitats are overlapping as climate change drives mangroves poleward. Scientists have documented mangrove expansion and the transition of oyster reef habitat to mangrove islands. Past studies have shown large, adult mangrove stands drive soil acidification. The goal of this study was to understand if stand-alone, or pioneer, Rhizophora mangle (red mangroves) and Avicennia germinans …