Digital Commons Network^™

Explorations Of Dna-Single-Walled Carbon Nanotube Interactions To Develop Multiplexed Molecularly Specific Biosensors For Inflammation, Amelia K. Ryan

Dissertations and Theses

Inflammatory cytokines such as interleukin-6 (IL-6) and interleukin-12 (IL-12) are central regulators of immune signaling and key biomarkers of disease, yet existing assays for their detection remain slow, invasive, and lack multiplexing ability. This dissertation advances the development of single-walled carbon nanotube (SWCNT) optical nanosensors capable of real-time, multiplexed, and molecularly specific cytokine detection through innovative use of single-stranded DNA (ssDNA) interfaces.

First, an IL-6-specific DNA aptamer was employed as both a dispersing agent and recognition probe for SWCNT fluorescence sensing. Sequence modifications, including anchor domains, truncations, and thermally induced refolding, were systematically tested to optimize sensitivity and selectivity. The …

Isolating Confounding Abiotic And Biotic Effects On The Phenotype On Physa Acuta Snails, Ashley M. Bauer

Theses and Dissertations

Organisms match their phenotypes to prevailing environmental conditions leading to habitat specific polymorphisms. Polymorphisms arise from genetic divergence, phenotypic plasticity, or a combination of both processes. I examined the presence of habitat-specific polymorphism in Physa acuta snails collected from three streams and their corresponding downstream reservoir. In lotic systems shells were rotund with larger apertures, while those from lentic systems were more elongate with smaller apertures. In a reciprocal transplant lab experiment that crossed flow regime and crayfish predator cues, I tested for the underlying mechanisms responsible for the observed phenotypic differences. I found no evidence for plasticity in relation …

Habitat Loss And Its Behavioral Effects On A Female Gray Hawk In The Lower Rio Grande Valley Of Texas, Usa, Michael T. Stewart, Ashley M. Tanner, Brian A. Millsap, William S. Clark

Human–Wildlife Interactions

Habitat loss is a major threat to wildlife worldwide. While habitat loss is commonly associated with the fragmentation, degradation, or destruction of large tracts of suitable space, habitat loss in urban environments can be much more incremental and nuanced. We tracked an adult female gray hawk (Buteo plagiatus) in the Lower Rio Grande Valley of Texas, USA, before and after 70% of the trees (7.6 ha) were cleared from the core of the nesting territory. While the hawk’s overall activity budget between within-patch and exploratory movements was unchanged, the hawk undertook substantially longer exploratory movements after the trees …

Interfacing Neural Models: Biocompatibility And Fabrication Of A Flexible, Self-Folding Microelectrode Array, Fernando A. Pesantez Torres

Electronic Theses & Dissertations (2024 - present)

Neurodegenerative diseases pose a formidable challenge in modern medicine, necessitating the development of advanced research tools that can elucidate their complex pathophysiology. Recent advancements in neurodegenerative disease research have led to the development of three-dimensional (3D) neurodegenerative organoids using human induced pluripotent stem cells (hiPSCs). These organoids closely mimic human brain architecture and functionality, providing a valuable tool for understanding complex diseases. Additionally, the ability to generate and study brain organoids consistently and in large quantities holds potential for a controlled in vitro setting and high-throughput drug screening. However, these models are complex systems requiring specialized maintenance, analysis, and manipulation …

Elucidating The Effects Of Environmental And Physiological Conditions On Stem Cell Regulation In Vivo, Nimmy John

Electronic Theses & Dissertations (2024 - present)

The Notch signaling pathway is a highly conserved intercellular signaling pathway that any dysregulation can lead to a variety of human diseases. These diseases are further exacerbated by various environmental, pathological and genetic conditions. Previous studies have shown that these conditions have been known to affect the Notch transcriptional response. However, the molecular mechanisms by which such conditions influence Notch signaling remained largely unknown. Moreover, most Notch studies have relied on in vitro systems and indirect reporters, which can miss the dynamic and contextual nature of Notch signaling. Here, we systematically analyzed the effects of these conditions with single molecule …

Characterization Of Corticotropin Releasing Factor Receptor 2 In Stress-Regulating Regions Of The Mouse Brain, Jennifer J. Lafrican

Electronic Theses & Dissertations (2024 - present)

Sex differences in the morphology of the brain are thought to underlie the sex differences we see in anxiety and depression, where women are twice as likely to be diagnosed when compared to men. Stress, or a disruption to homeostasis, can exacerbate these mood disorders. Corticotropin releasing factor (CRF), and its receptors, play an important role in regulating the stress response. Binding of CRF with CRFR2 has been shown to reduce behavioral and neuroendocrine stress responses, yet whether there are sex differences in CRFR2 expressing neurons and stress-induced activation of these neurons in mice is unknown, in part due to …

Linking Disturbance & Macrophyte Colonization–Extinction Dynamics To Invasion Success & Community Assembly: Integrating Population, Community, & Landscape Perspectives, Joshua T. Armstrong

Theses and Dissertations

Aquatic plants, macrophytes, are foundational components of freshwater ecosystems, influencing abiotic conditions, providing habitat structure, and shaping biodiversity and community assembly processes. Their role is particularly critical in dynamic systems where disturbance regimes and colonization processes interact to shape community patterns and species distributions. Despite their ecological importance, macrophytes remain underrepresented in theoretical and applied studies of metacommunity dynamics and invasion ecology, especially in natural systems experiencing frequent environmental fluctuations. Here we aim to elucidate how macrophytes influence and respond to spatial and temporal variation in aquatic ecosystems, with a particular focus on colonization-extinction dynamics, invasion success, and community assembly. …

Prevalence Of Insecticide Resistance Gene In Aedes Albopictus Populations Of Central Illinois, Merylann Akinyi Ochieng

Masters Theses

The Asian tiger mosquito, Aedes albopictus, is a significant vector for diseases such as Dengue, Chikungunya, and Zika. Its increasing resistance to insecticides poses a critical challenge for vector control efforts. This study investigates knockdown resistance (kdr) mutations in the voltage-gated sodium channel (VGSC) genes, specifically V1016G and F1534C, which are associated with pyrethroid resistance. Aedes albopictus populations from Central Illinois were analyzed using allele-specific PCR techniques to address three primary objectives: (1) determining whether V1016G and F1534C mutations are present in these populations, (2) determining which mutation is more widespread, and (3) investigating how resistance gene …

Spatiotemporal Variability In Invasive Carp Spawning Activity In Two Midwestern River Basins, Braden A. Whisler

Masters Theses

Across the United States, fisheries managers and agencies continue to battle the spread of invasive bigheaded carp (Hypophthalmichthys spp.). Although previous research has identified environmental parameters such as temperature and flow to be triggers of spawning activity, many of these studies focus on larger rivers, rarely focusing on the specific thresholds or timing of when a spawning event takes place. I utilized the differing hydrology of the Illinois and Wabash Rivers and their tributaries to examine the differences in environmental parameters needed to trigger bigheaded carp reproduction. Three mainstem sites and three tributaries of both basins were sampled …

L-Theanine Modulates Stress Physiology And Immunology In Nile Tilapia, Sammie Miller, Lindee Mason, Shah Sumaiya Khaled, Elena Deng, Ahmed Mustafa

Mansoura Veterinary Medical Journal

Background: Fish are a prominent food source within the growing aquaculture industry, particularly within recirculating aquaculture systems, to alleviate global hunger demands. Diminishing detrimental stress conditions such as overcrowding prevalence and chemical toxins remain a primary goal. Nutraceuticals, particularly L-theanine, pose a natural alternative solution to alleviate these conditions. The amino acid L-theanine was scrutinized as a potential nutraceutical additive within commercial feed within the diet of Nile tilapia, Oreochromis niloticus, subjected to stress and unstressed in-vivo conditions.

Methods: To accomplish this, both 0.004% of body weight of L-theanine and 0.01% of body weight of hydrocortisone were implemented into feed …

Pharmacological Safety Profiling Of Nigella Sativa (Ns) And Hibiscus Sabdariffa (Hs) Extracts In Zebrafish (Danio Rerio) Embryos: An Integrative Vet-Pharmacotoxicological Evaluation Of Lc₅₀, Teratogenicity, And Developmental Outcomes, Ahmed E. A. Mostafa

Mansoura Veterinary Medical Journal

Herbal medicines are deeply rooted in Egyptian and Middle Eastern traditions, with Nigella sativa (NS) and Hibiscus sabdariffa (HS) being among the most widely consumed remedies. Despite extensive pharmacological evidence of their therapeutic benefits, systematic safety validation remains limited. Conventional toxicity assessments predominantly rely on rodents and higher vertebrates, which are costly, time-consuming, and ethically challenging. This gap necessitates alternative models that align with the 3R principles (Reduction, Replacement, Refinement). In this study, the zebrafish (Danio rerio) embryo model was employed to evaluate the developmental toxicity and median lethal concentration (LC50) of NS and HS aqueous extracts. Zebrafish embryos at …

Blattella Germanica As A Vector Of Salmonella Typhimurium, Matthew Turner

Dissertations and Theses

The following investigates the role of the German cockroach (Blattella germanica) as a vector of the bacterium Salmonella enterica subspecies enterica serovar Typhimurium (S. Typhimurium). As such, this work examines various host-pathogen-microbiome interactions that define the vectorial capacity of the German cockroach for Salmonella. To date, the majority of literature focuses on the general association of the German cockroach with various human pathogens, claiming any dissemination to be carried out via passive mechanical transmission. This project recognizes those claims, while expanding to include the possibility of biological transmission, involving active and complex host-pathogen interactions, including mechanisms like replication within the …

Small Mammal Diet As An Indicator Of Lyme Disease And The Road To Endemicity In Michigan’S Upper Peninsula, Jacqueline E. Suits

Dissertations, Master's Theses and Master's Reports

Lyme disease is expanding in the Upper Midwest due to climate change, forest degradation, and shifting wildlife communities. Small mammals are key reservoir hosts, and their foraging behavior offers insight into environmental conditions that sustain pathogen transmission. We used DNA metabarcoding to investigate small mammal diets across seasonal, spatial, and infection gradients in Michigan’s Upper Peninsula. We identified dominant dietary plant and arthropod taxa, seasonal shifts, and slight variation by species, site, and Lyme infection status. Taxa associated with Lyme-positive individuals were primarily linked to moist, edge, and disturbed habitats, areas that also support ticks and disease spread. These results …

Rotten Through The Cores: What Decomposition Can Tell Us About Carbon Cycling, Eileen C. Reeves

Dissertations, Master's Theses and Master's Reports

Sequestration of carbon (C) in forests means that the C is stored in the ecosystem and not emitted to the atmosphere, thus slowing the accumulation of greenhouse gases and mitigating the acceleration of manmade climate change. Quantifying the pools and fluxes of C in forests is therefore of considerable interest to landowners, policy makers, and scientists.

Decomposition is an ecological process central to the movement of C through ecosystems. This dissertation uses several techniques to help determine the factors influencing the speed of decomposition and long-term fate of decomposed plant material. In Chapter Two, phospholipid fatty acid analysis was used …

Nature, Nurture, And Serial Murder: A Biocriminological Analysis Of Jeffrey Dahmer And Aileen Wuornos, Dori W. Jal

Honors Thesis

In recent years, there has been an increase in public fascination with serial killers, however current criminological explanations continue to focus on social and psychological factors, lacking commentary on potential biological implications. This thesis addresses a gap in the literature by examining how biological processes, specifically epigenetic, neurobiological, and endocrinological mechanisms, interact with environmental stressors to shape serial homicidal behavior. The goal is to determine whether serial murder can be more effectively understood through a biosocial framework that integrates biological vulnerability with lived experience, rather than relying on singular explanatory models.

Using a qualitative multiple-case study methodology, this research analyzes …

Unleashing Serine Palmitoyltransferase In Test Tubes And Mice, Matthew W. Peart

Theses and Dissertations

Canonically known both for structural contributions to lipid bilayers and roles in cell signaling, the sphingolipids comprise a dynamic, multifaceted class of molecules which are studied to understand homeostatic cell biology as well as pathophysiology. Sphingolipids contribute to tissue-specific structures such as myelin, a multilayer membrane that allows for rapid conduction of action potentials along neuronal axons. All sphingolipids are downstream products of the rate-limiting and initiating enzyme in the de novo sphingolipid synthesis pathway, Serine palmitoyltransferase (SPT). Demonstrative of its status as the enzyme that catalyzes a crucial step in a biochemical pathway, SPT activity is strictly regulated. This …

Climate Change-Induced Shifts In Mediterranean Fungal Fruiting Phenology And Productivity, Rachel Demay

Theses and Dissertations

We used a 29-year dataset of mushroom fruiting from the Pinar Grande forest in northern Spain to investigate the effects of climate change on the phenology, productivity, and diversity of mycorrhizal and saprotrophic mushrooms. We investigated the long-term trends in fruiting season length, yield (by count, total weight, and average weight), and genus richness. Additionally, we identified associations between monthly temperature and monthly precipitation with these fungal responses across functional groups: mycorrhizal, saprotrophic, litter-decaying saprotrophic, and wood-decaying saprotrophic mushrooms, and the economically-important edible genera Boletus and Lactarius. We found that autumnal season length in the Pinar Grande has shortened over …

Molecular Mechanisms Of Kynurenine-Mediated Lifespan Regulation In Yeast, Ryan E. Counterman Jobb

Theses and Dissertations

The kynurenine pathway is a highly conserved pathway that acts as the primary pathway for tryptophan catabolism and has been found to be involved in lifespan regulation across many diverse organisms. Caloric restriction (CR) is the only known dietary intervention to date that both increases the mean lifespan and the health span of multiple organisms, although the molecular mechanisms of these effects are not fully understood. There are known and sometimes contradictory relationships between the kynurenine pathway activity and the life- extending effect of CR but the crosstalk between the two is not well characterized. Understanding these relationships could lead …

Evaluation Of The Impact Of Secondhand E-Cigarette Aerosols On Ros-Mediated Alterations Of Epigenetic Events: Implications For Copd Pathogenesis And Assessment Of The Efficacy Of Cold Atmospheric Plasma In Degrading Organophosphate Pesticides On Kevlar Materials, Ta-Chun Lin

Masters Theses

"We explored 1) the toxicological impacts of e-cigarette aerosols and 2) the decontamination efficacy of Cold Atmospheric Plasma (CAP) technology over organophosphates. In examining the effects of firsthand and secondhand e-cigarette aerosol exposure on A549 and BEAS-2B lung cells, we observed significant cytotoxicity, increased ROS levels, and epigenetic modifications, including heightened DNA methylation and downregulation of histone deacetylases (HDACs). These molecular alterations may contribute to chronic respiratory conditions, such as COPD, underscoring the health risks of e-cigarette exposure.

We investigated CAP’s effectiveness in degrading organophosphate pesticide (OP) residues on fabric surfaces, revealing that CAP treatment effectively decomposes OPs such as …

Bacteria-Engineered Vesicles For Cancer Immunotherapy: From Immunomodulation In Vitro To Anti-Tumor Effects In Melanoma Models, Lan Li

Theses and Dissertations--Chemistry

Bacterial vesicles hold immense potential in various biomedical fields. Among these, outer membrane vesicles (OMVs) produced by Gram-negative bacteria are the most extensively studied. While the exact mechanism of OMV production remains unclear, numerous environmental factors have been shown to influence both their yield and composition. In this study, we investigated the effect of three different antimicrobial families on OMV production by E. coli. Interestingly, antimicrobials within the same family did not provide the same effects on OMV yield, suggesting that OMV production may not directly correlate with the antimicrobial mechanism of action. OMVs have demonstrated tumor-inhibitory activity in multiple …

Functional And Structural Impacts Of Bison Grazing Intensity On Plant Communities, Samantha Lynn Berk

Graduate Research Theses & Dissertations

The reintroduction of grazing disturbance has become an increasingly popular tool in grassland restoration to build and maintain diverse and functioning ecosystems, but our understanding of how grazers like bison (Bison bison) shape plant communities is limited by binary grazing treatments and unanswered calls for in-depth and mechanistic examinations of community function and structure. Little research has focused on how natural variations in bison grazing intensity impact the function and structure of restored tallgrass prairie; whereby functional diversity is purely defined by changes in trait expression according to plant responses to grazing, and examining both vegetation structure and ecosystem function …

Evaluation Of Blue Catfish Populations In Four Midwestern Power Cooling Reservoirs, Tyler Joseph Murray

Masters Theses

Blue Catfish (Ictalurus furcatus) are the largest catfish in North America and as such angler desire for trophy fisheries have grown in addition to harvest fisheries. The Illinois Department of Natural Resources (IDNR) has stocked Blue Catfish into several reservoirs in the state including four that have powerplants that utilize the water for cooling and discharge it back into the reservoir at increased temperatures. This study explored the potential impacts of these warm water effluents on Blue Catfish population demographics, as well as whether management changes need to be implemented in these systems. I sampled Powerton, LaSalle, Springfield, …

Optimization Of Transformation And Regeneration In The Sunflower (Helianthus Annuus), Sara M. Kilar

Masters Theses

In addition to their value as prized ornamentals, sunflowers are important crop species due to the nutritional value and high oil content of the seeds. Sunflower oil is a significant contributor to global seed oil production, which can be used as a food additive and cooking agent as well as a raw material for biodiesel production. While traditional breeding efforts have led to the development of many unique cultivars, genetically modified variations have proven more difficult due to the recalcitrance of sunflower plants to genetic transformation. As a result, facile and efficient transformation methods for sunflowers have the potential to …

Insect Foraging Behaviors Across Habitat Types In Weddell’S Saddle-Back Tamarins, (Leontocebus Weddelli Weddelli) In Pando, Bolivia, Brianna Nicole Abba

Graduate Research Theses & Dissertations

Researchers assume that small-bodied primates like the callitrichines are highly adaptable to environmental change and can increase their consumption of insects in disturbed habitats, however, these assumptions have rarely been tested. To better understand how habitat and other factors may influence the frequency of insect foraging, the type of prey capture techniques used, and prey capture success, I collected detailed observational data on one group of Weddell’s saddle-back tamarins (Leontocebus weddelli weddelli) in northwestern Bolivia in July and August 2022. I found that tamarins spent 62% of their total foraging and feeding time on insects. They spent 89% of their …

Gustatory Behaviors Of House Flies: Body Parts Used And Response To Bitter, R M Panchalie Bhagya Gunathunga

Graduate Research Theses & Dissertations

Insects use multiple body parts, not just their mouth, to taste. Whether a particular body part has a taste function can be determined indirectly by examining the morphology or electrophysiological response of its sensilla (sense organs) or directly by the insects’ behavioral response. Understanding the taste system of insects allows development of better management strategies against pest insects and strategies to protect beneficial insects.House flies, Musca domestica L., are pests at livestock facilities. House fly numbers are controlled mainly by manure management and chemical controls. Toxic granular fly baits remain one of the most popular and effective forms of chemical …

Demographic Response Of Breeding Grassland Birds To Keystone Effects Of Black-Tailed Prairie Dogs, Richard Andrew Dreelin

Graduate Research Theses & Dissertations

Grassland birds are the most rapidly declining group of birds in North America due to a host of historical and recent changes to the Great Plains (Rosenberg et al., 2019; Bernath-Plaisted et al., 2023). Grassland birds evolved in a mosaic of heterogeneous habitats created by disturbance from keystone species and Indigenous peoples, and the suppression of disturbance by European settlement has resulted in more homogenous habitat and population declines in grassland birds (Knopf, 1994; Samson & Knopf, 1996; Vickery, Peter D. et al., 1998). Restoring the historical disturbance patterns and habitat heterogeneity forms the basis of management activities for grassland …

3d-Printed Polylactide Structures Do Not Affect The Demography Of The Threatened Coral Acropora Cervicornis, Gabriela Baerga-Jiménez, Alex E. Mercado-Molina

Gulf and Caribbean Research

The development of artificial structures using emerging 3D printing technology has been proposed as a possible strategy to promote the recovery of degraded coral reef ecosystems. Current technologies allow 3D printers to faithfully replicate the morphology of coral reef attributes (e.g., substrate and coral colonies). Thus, 3D printing can be used to create artificial structures that replicate microhabitats resembling those found by reef organisms in nature. However, the use of 3D printing technology for reef conservation and restoration purposes is still in its early developmental stages. Consequently, the potential benefits or detriments of the technology on coral reef health and …

Prospective Use Of Detection Dogs As A Screening Tool For Mycoplasma Ovipneumoniae In Bighorn Sheep (Ovis Canadensis), Michele C. Lovara

Electronic Theses and Dissertations

Mycoplasma ovipneumoniae is a bacterium that can spill over from domestic sheep (Ovis aries) to bighorn sheep (Ovis canadensis), with effects in bighorn sheep ranging from low to no lamb recruitment to whole-herd all-age die-offs from resulting pneumonia. Fast and reliable pathogen or disease detection is essential for managing outbreaks in bighorn sheep and emergences in affected populations. Detection dogs are increasingly being enlisted to close gaps and further complement various disease, pathogen and virus research and response efforts. This thesis explores the use of conservation detection dogs as a potential tool for M. ovipneumoniae surveillance in bighorn sheep through …

Phytogenic Feed Additives Pre- And Post-Calving And Effects Of Substituting Ddgs With Soybean Meal On Protein Metabolism In Beef Cattle, Grace H. Jardon

Electronic Theses and Dissertations

The objective of these studies was to evaluate nutritional strategies to improve beef cattle productivity through targeted supplementation and protein source manipulation. The first study investigated the effects of a phytogenic supplement (PHYT; a blend of turmeric, capsicum, and black pepper oleoresin) on colostrum yield and composition, calf passive immunity, and cow–calf performance. Twenty-three Angus-based cows were assigned to either a control group or received 250 or 500 mg/head/day of PHYT from 30 days pre-calving to 60 days post-calving. Supplementation with PHYT linearly increased colostrum fat and calf serum IgA concentrations. Milk fat, calf serum IgG, and colostrum IgM tended …

Effect Of Six-Day Germination On Chemical Composition, Functional, And Nutritional Properties Of Pea Varieties, Hojjat Abdollahikhamene

Electronic Theses and Dissertations

Pulses, particularly peas, have long been a crucial source of protein in vegetarian and cost-effective diets worldwide. They have gained popularity in Western diets as more people turn to plant-based proteins as alternatives to animal products. Peas are known for their high protein content; however, their use in food products has been limited due to factors like poor solubility and digestibility. Germination improves the nutritional profile of peas by enhancing protein content and digestibility. The objective of this study was to determine the effects of six days of germination on the nutritional composition and functional properties of different varieties of …