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Nanotube Spectral Fingerprinting And Machine Learning For Optimized Bioimaging/Sensing And Disease Detection Applications In Als, Rodrigo Monroy Lopez

Open Access Master's Theses

Single-walled carbon nanotubes (SWCNTs) possess unique physicochemical and optical properties that make them ideal candidates for biomedical imaging, biosensing, and disease diagnostics. This thesis explores the potential of SWCNT-based spectral fingerprinting combined with ML (Machine Learning) algorithms to optimize bioimaging, disease detection and prediction, with a specific focus on differentiating between healthy and amyotrophic lateral sclerosis (ALS) lymphoblastic patient samples. By functionalizing SWCNTs with single-stranded DNA, we enhance their stability and target specificity, enabling their application in serum patient samples.

A comprehensive spectral analysis of DNA-SWCNTs was conducted using near-infrared fluorescence spectroscopy and other characterization techniques, including UV-Vis-absorption spectroscopy. The …

The P3 Event-Related Potential (Erp) In Visual And Auditory Tasks: Implications For Executive Functioning In Adhd Preadolescent Children, Alex Visal Seng

Open Access Master's Theses

Attention-Deficit/Hyperactivity Disorder (ADHD) is a widespread psychological disorder in children, poorly impacting executive functioning domains of inhibitory control and working memory. Event-related potentials (ERPs) provide neuroelectric insight into these cognitive processes. However, most ERP research focuses on one task type, limiting direct comparisons of cognitive demands across different task paradigms. This study examined P3 amplitude and latency in ADHD children using a visual NoGo task (response inhibition) and an auditory oddball task (working memory), and associations between the P3 ERP and behavioral measures of executive functions.

Cross-sectional data of symptomatic ADHD children (N=13; F=5; aged 9.15 ± 1.86 years) were …

Rad Reduction Reveals Therapeutic Potential Of Targeting Cardiomyocyte L-Type Calcium Channel Regulation For Heart Failure, Garrett Elmore

Theses and Dissertations--Physiology

Heart failure (HF) is prevalent and is predicted to increase with the aging population. Dilated cardiomyopathy (DCM) is a common cause of systolic HF. Current therapies fail to address principal issues: compromised systolic function and dysfunctional Ca²⁺ handling. No therapeutic approach exists for direct, positive modulation of cardiomyocyte L-type calcium channels (LTCC). RAD (Ras associated with diabetes) is a key regulator of the cardiac LTCC. RAD is a downstream phosphorylated target of the ß-adrenergic receptor (ß-AR)/cAMP/protein kinase A pathway; phosphorylation augments LTCC activity, contributing to chronotropy, inotropy, and lusitropy. RAD overexpression results in LTCC inhibition, whereas knockout positively modulates …

All Wrapped Up: How Choice Of Egg Wrapping Substrate During Oviposition Site Selection Affects Predation And Embryonic Growth In Eastern Newts, Anna Prohofsky

Master’s Theses

Parental care behaviors have a significant impact on the survivorship of offspring and therefore the inclusive fitness of the parent. These behaviors are broad and varied and include defending against predators, acquiring food, and choosing where to lay their eggs. The latter, oviposition site selection, has significant impact on embryo survivorship in oviparous animals, as the chosen sight can impact factors such as incubation temperature, predation risk, and resource availability. For amphibians, oviposition site selection is particularly crucial as their eggs lack a calcareous shell, leaving them more susceptible to environmental conditions and predation. In response to this, amphibians have …

Using Post-Supercritical Co2-Assisted Method To Deposit Niep Alloy Coating On The Micro-Arc Oxidation Layer Of Az31 Magnesium Alloy And Its Corrosion Behavior Analysis, Kang-Yu Liao, Hung-Hua Sheu, Ming-Yuan Lin, Ming-Chih Kuo, Po-Hsun Wu, Hung-Bin Lee

Journal of Marine Science and Technology–Taiwan

In this study, a Ni-P alloy coating was deposited on the micro arc oxidation (MAO) layer of AZ31 magnesium alloy to improve its corrosion resistance. The MAO layers were prepared under different operated voltages from 300 to 400 V. The results indicated that the optimize operated parameters for MAO layer is at 350 V, the MAO coatings had the most compact microstructure and superior corrosion resistance. In order to improve the corrosion resistance of MAO coating, this study chose to deposit Ni-P alloy coating on the surface of MAO coating via the post supercritical CO₂-assisted electroless plating (PSC-CO …

Evaluation Of Carbon Sequestration In Seagrass Meadows Of Kenting: A Comparative Study With Penghu And Dongsha Island, Zih-Wei Tang, Huei-Fen Chen, Jordi Mahardika Puntu, Ping-Yu Chang, Li Lo, Jian-Jhih Chen, Wen-Chen Chou, Lan-Feng Fan, Ying-Ju Chang

Journal of Marine Science and Technology–Taiwan

This study investigates the controlling factors of carbon sequestration (CS) in seagrass bed sediments across three distinct environments in Taiwan: the Kenting (KT) coastal area, the Penghu (PH) open inner bay, and the Dongsha (DS) Atoll lagoon. Actual measurements of the substrate depth beneath the sediment and ground-penetrating radar (GPR) scans of the beach reveal that the coral reef bedrock in KT slopes landward. A field survey of the seagrass area in KT was conducted, and three cross-sectional profiles were analyzed to determine their topography, yielding a median sediment thickness of 88.2cm. Based on these measurements, the sediment volume was …

Calculation Of Aquifer Transmissivity From Borehole Resistance Measurements And Pumping Test Results, Fen-Rong Yang, Chien-Wei Huang, Tien-Kuen Huang

Journal of Marine Science and Technology–Taiwan

Transmissivity is a crucial hydrogeological parameter for evaluating groundwater resources. This parameter is conventionally evaluated using pumping tests; however, these tests are costly and can be conducted at few sites. Many researchers have used ground resistance and pumping test data to estimate various hydrogeological parameters. In this study, borehole resistance survey and pumping test data collected by the Taiwan Groundwater Monitoring Network were used to establish the relationship between transmissivity and formation factor for aquifers in the Zhuoshui River alluvial fan. This relationship was then used to estimate the water output of the aforementioned aquifers in a cost-effective manner from …

A Neural Network-Based Sliding Mode Adaptive Control System For Unmanned Surface Vehicles, Sun Qiaomei, An Liang, Jiang Linglin

Journal of Marine Science and Technology–Taiwan

Over the past decades, numerous studies have explored the use of autonomous unmanned surface vehicles (USVs). Successful USV operation requires a robust tracking control system to perform a range of tasks. However, USV dynamics are uncertain, time-varying, and nonlinear. This paper presents a neural network-based sliding mode adaptive control (NNSMAC) system to enhance USV tracking performance. Trajectories were generated using spline and polynomial interpolation based on a set of N predefined waypoints. Simulation results show that the proposed method outperforms traditional sliding mode control in error reduction, enabling more effective tracking.

Molecular Mechanisms And Comparative Transcriptomics Of Diapause In Two Corn Rootworm Species (Diabrotica Spp.), Melise C. Lecheta, Chad Nielson, B. Wade French, Emily Nadeau, Nicholas M. Teets

Entomology Faculty Publications

Diapause is a programmed developmental arrest that can occur at any developmental stage depending on species, but the mechanisms that underscore embryonic diapause are poorly understood. Here, we identified molecular mechanisms underscoring distinct phases of diapause in the Diabrotica spp. complex. This species complex in- cludes economically significant agricultural pests, notably the western corn rootworm (WCR) and northern corn rootworm (NCR), which cause major losses in maize production. Rootworms undergo an obligate embryonic diapause to synchronize their life cycles with host plants, and we sequenced transcriptomes from both species at five time points (pre-diapause, diapause initiation, diapause maintenance, diapause termination, …

If You Build It: Using Ground Squirrel Risk Perception To Test Wildlife Crossing Structure Success, Sarah Sanz

All Master's Theses

Roads and traffic present many risks for wildlife, and animals must be able to accurately assess risks in their environment. Animals can often perceive the level of risk they face, and their behavioral responses can alter their fitness and potentially even whole-population dynamics. However, animals may be unable to properly measure the levels of risk near roadways because roads present novel environmental conditions and alter predators’ behavior. To mitigate some of the ecological problems created by roadways, wildlife crossing structures (WCSs) are being incorporated into transportation projects. To understand whether WCSs provide quality habitat for wildlife, we compared the levels …

Shrubsteppe Birds Under Fire: Guiding Post-Wildfire Habitat Restoration In The Whiskey Dick And Quilomene Units, Washington, Kevin Clements

All Master's Theses

Bird species, globally, are declining at an alarming rate. Birds of the shrubsteppe are particularly vulnerable to habitat loss caused by agricultural development, invasive vegetation, and heightened wildfire frequency and severity. Fire and invasive vegetation create a positive feedback cycle that threatens complete conversion of shrubsteppe to grasslands. Restoring habitat following wildfire is a top priority for land managers. As bioindicators of ecosystem health, bird populations reflect landscape changes and restoration efficacy. I analyzed bird populations in the Whiskey Dick and Quilomene units of the L.T. Murray Wildlife Area in Kittitas County, Washington following the 2022 Vantage Highway fire. Using …

Trait-Based Predictors Of Social Rank In Astatotilapia Burtoni, Joshua T. Johnson

All Master's Theses

Dominance hierarchies are a central feature of social species, influencing access to resources, reproductive opportunities, and survival. In many animals, body size is a primary determinant of social rank, but other morphological traits may also contribute. This study investigates how physiological traits—including body size, pigmentation, lachrymal striping, and egg spots—relate to social dominance in Astatotilapia burtoni, a socially dynamic African cichlid.

Side-profile photographs were used to measure body size, red, green, and blue pigmentation intensity, lachrymal stripe area, and egg spot count. Behavioral interactions were recorded and analyzed using the Elo rating system to generate a continuous measure of …

Enhanced Cholesterol Efflux And Atherosclerosis Regression Via Ceh Gene Delivery Using Galactose-Functionalized Dendrimeric Nanoparticles, Huari Kou, Jing Wang, Paul J. Yannie, Da Huang, William J. Korzun, Genta Kakiyama, Siddhartha S. Ghosh, Hu Yang

Chemical and Biochemical Engineering Faculty Research & Creative Works

Cholesteryl ester hydrolase (CEH) is a critical enzyme in cholesterol ester hydrolysis, influencing cholesterol metabolism and efflux. This study demonstrates that CEH overexpression promotes free cholesterol efflux from macrophages, thereby reducing the lipid burden in existing atherosclerotic plaques. To enable targeted delivery, galactose-functionalized polyamidoamine (PAMAM) dendrimeric nanoparticles were utilized as nanocarriers for hepatic delivery of the CEH expression vector. The therapeutic potential of CEH plasmid-loaded dendrimeric nanoparticles was evaluated in Ldlr-/- mice. Results showed a significant reduction in total lesion area (21%) and aortic arch lesion area (23%) compared to baseline. Lesion component analysis revealed marked decreases in total cholesterol …

Food-Related Behaviors Of Rural (Asaase Kooko) And Peri-Urban (Kaadjanor) Households In Ghana, Prince Kwabena Osei, Megan A Mccrory, Matilda Steiner-Asiedu, Edward Sazonov, Mingui Sun, Wenyan Jia, Tom Baranowski, Gary Frost, Benny Lo, Alex Kojo Anderson

Children’s Nutrition Research Center Staff Publications

Background: "Food-related behaviors" range widely and include food acquisition, storage, cooking, meal sharing, eating practices, among others. Food-related behaviors can influence nutritional status and health outcomes, and likely vary between rural and peri-urban households; however, there is limited documentation on such differences.

Objective: To assess food-related behaviors of rural and peri-urban households in Ghana to inform the design and implementation of a field study to validate passive wearable camera technologies for dietary assessment.

Methods: This was a cross-sectional qualitative study in rural (Asaase Kokoo) and peri-urban (Kaadjanor) communities, Ghana. Forty key informants (20 rural and 20 peri-urban) were interviewed about …

Regulatory B Cells, The Key Regulator To Induce Immune Tolerance In Organ Transplantation, Jinfeng Liao, Yixin Yang, Jisong Li, Zheng Liu, Siyuan Song, Yu Zeng, Yi Wang

Children’s Nutrition Research Center Staff Publications

In solid organ transplantation, especially renal transplantation, for the induction of immune tolerance, accumulating evidence has revealed that Regulatory B cells (Breg) play a crucial role in stimulating immune tolerance, alleviating immune responses, and improving graft survival. We describe the heterogeneous nature of Bregs, focusing on their defining surface markers and regulatory functions. Meanwhile, the major cytokine secretion function and the correlation between Breg and Treg or other immune checkpoints to balance the immune responses are addressed. Furthermore, we summarized the intrinsic and extrinsic pathways or costimulatory stimuli for the differentiation from naïve B cells. More importantly, we summarized the …

A Reflection-Spectroscopy Measured Skin Carotenoid Score Strongly Correlates With Plasma Concentrations Of All Major Dietary Carotenoid Species Except For Lycopene, Qiang Wu, Cheryl Webb Cherry, Stephanie Jilcott Pitts, Melissa N Laska, Neal Craft, Nancy E Moran

Children’s Nutrition Research Center Staff Publications

Skin carotenoids can be measured non-invasively using spectroscopy methods to provide a biomarker of total dietary carotenoid and carotenoid-rich fruit and vegetable intake. However, the degree to which skin carotenoid biomarkers reflect intakes of specific carotenoids must be determined for specific devices. Previously, findings were mixed regarding the correlation between reflection spectroscopy (RS)-assessed skin carotenoids and individual plasma carotenoid concentrations. The current study expands on prior analyses to examine the cross-sectional associations between adult RS-assessed skin carotenoids and individual carotenoid species intakes and plasma concentrations, controlling for potential covariates. We hypothesized that RS-assessed skin carotenoid scores would strongly correlate with …

Predictors Of Facultative Siblicide In Black-Legged Kittiwake (Rissa Tridactyla) Chicks, Maria Pisciotta

Honors Theses

In Black-legged kittiwakes (Rissa tridactyla), a seabird species, competition between siblings can arise when more than one chick is present in a nest. The first-hatched chick, known as the “A” chick, frequently establishes dominance over the second-hatched chick, known as the “B” chick. Many different factors can drive the presence and intensity of this competition, including the size discrepancies between chicks, and their physiological state. A likely factor is resource limitation, seen in many instances of sibling competition to be a prominent component because limited food must be allocated between both chicks by parents. In some cases, competition can escalate …

The Aussie Oddballs: Identifying The Existence Of Censer And Trample Burr Dispersal In Australian Bush Tomatoes, Abigail Motter

Honors Theses

Australian bush tomatoes in northern Western Australia likely have seed dispersal mechanisms that depend on processes outside of frugivory, which is unusual for this genus. Solanum tudununggae seeds are wind dispersed by the censer mechanism, meaning that seeds fall from holes in the top of the fruit when the branches move. In another species, piles of abscised and burr-like fruits have been found strewn around the bases of S. ossicruentum, possibly due to the extinction of animals that may have been a means of dispersal via epizoochory. In this study, we attempt to provide support for the theorized dispersal …

Bovine Serum Albumin (Bsa) Impacts Morphology Of Fowler’S Toad (Anaxyrus Fowleri) Sperm During Short-Term Cold Storage, Jane A. Dill, Michelle K. Roy, Renato E. Naranjo, Andrew J. Kouba, Carrie K. Vance

Endeavors: Mississippi State Undergraduate Research Journal

Short-term cold storage of amphibian sperm is a valuable technique for overcoming challenges associated with asynchronous gamete release during breeding events or for transferring sperm between institutions for genetic management. Unfortunately, sperm longevity declines over time even when kept cool. Maintaining sperm form and function is critical to achieving the highest possible fertilization rates. Thus, cold storage of amphibian sperm would benefit from the addition of compounds that could extend their quality, improve fertilization and result in more offspring. One such compound is bovine serum albumin (BSA), which provides membrane stabilization, prevents lipid peroxidation of cells, protects against free radical …

Journal Of Earth And Life Science, Academic Year 2024-2025, Megan Boche, Nathan D. Pyburn, Ben Hoover, Jayden R. Alsleben, Hector Montoya, Jr, Reed Cumberland, Rose Kuhlmann, Ray Anderson, Ellie Isakson, Seth Sisneros-Martinez, Zanden Mellen, Quady Bernu, Cian Verbridge, Benjamin D. Strei, Madelaine Adamich, Arian Garcia, Tegwen Romportl, Sandra J. Marcu, Bemidji State University

Journal of Earth and Life Science

No abstract provided.

Size Structure Of Black Crappie And Bluegill In Northern, Eastern, Western, And Southern Minnesota, Ray Anderson

Journal of Earth and Life Science

Fish size structure is an important factor in a fishery population. Panfish such as black crappie Pomoxis nigromaculatus and bluegill Lepomis macrochirus play a major role in the health of fisheries. Five lakes from southern, northern, eastern, and western Minnesota were selected for analysis. Data were collected using standard sampling methods, including gill nets, electrofishing, and fyke nets. Length-frequency distributions were created to assess size structure in each region. Relative abundance was measured using catch per unit effort. Data analysis included a one-way ANOVA to compare Proportional Size Distribution (PSD) values and the distribution of fish sizes among regions. Chi-square …

Comparison Of Hoop Nets To Trap Nets In Sampling Panfish, Jayden R, Alsleben

Journal of Earth and Life Science

Panfish including bluegill Lepomis macrochirus and black crappie Pomoxis nigromaculatus are gamefish species of significance found in Minnesota. Hoop nets and trap nets are two types of gear that can be used to sample these fish. Fisheries managers and anglers alike are interested in the best tactics to capture panfish. The behavior of fish, including bluegill and black crappie, change throughout the sampling season and make it difficult to assume accurate representations. Trap nets have historically been adequate in sampling near shore populations, but questions surrounding the gear have allowed other options to be pursued. The objective of this study …

The Relationship Between Plant Density And Microplastic Concentration In The Water In Lake Bemidji, Mn, Arian Garcia

Journal of Earth and Life Science

Microplastics, plastic particles smaller than 5 mm, are an increasing environmental threat, particularly due to their widespread distribution and toxicity. While much research has focused on larger freshwater and marine ecosystems, the presence and impacts of microplastics in smaller inland lakes remain less understood. This study investigates the relationship between plant density and microplastic concentrations in Lake Bemidji, a smaller freshwater lake. A total of 30 water samples were collected across varying vegetation conditions, ranging from open water (0%) to 90% plant coverage. Microplastics were identified and categorized into six morphological types: fibers, fragments, films, spheres/beads, and foam. The samples …

A Sample Of Fish Communities In Beaver Ponds Of Northern Minnesota, Reed Cumberland, Rose Kuhlmann

Journal of Earth and Life Science

The North American beaver Castor canadensis is an ecosystem engineer and a keystone species to the environment. Beaver inhabit ponds and construct dams to build ponds that provide habitat for certain fish. Little information is provided on the species of fish that live in beaver ponds. The objective of this study is to sample the fish communities in beaver ponds while comparing the effectiveness of two styles of minnow traps. Twelve beaver ponds were selected in the Bemidji area to be sampled. The quantity and species caught in each style of trap were recorded to compare effectiveness of each trap …

Effects Of Round-Up On The Environment, Sandra J. Marcu

Journal of Earth and Life Science

Many people around the world have used and still currently use Roundup but are unaware of the effects it has on the environment. Roundup is a spray on application weedkiller that is widely used around the world today both residentially and commercially. It enables its user to grow a garden or a field of crops with a no-tilling approach to eliminate weeds. It is a well-known and popular choice for killing weeds that has been around since the mid 1970’s (Oca, 2017). John Franz, a Monsanto scientist discovered that glyphosate (main ingredient in Roundup) was an herbicide or weedkiller, and …

Does Depth Affect Zebra Mussel Length In Scalp Lake?, Zanden Mellen

Journal of Earth and Life Science

Since its first sighting in 1996, zebra mussels Dreissena polymorpha have been confirmed in hundreds of Minnesota lakes. Not only were they found in lakes, but they are also found in rivers too. With lack of effective treatments to impede their spread, zebra mussels continue to colonize new areas causing ecological as well as economic harm. The objective of this study was to see if there was a relationship between a zebra mussel length and the depth, they are found using shell length (mm) and depth (cm). The comparison of zebra mussel length and depth was done by performing a …

Age Class Is Not Related To Size Or Composition Of Home Ranges Among Suburban White-Tailed Deer During Parturition, Nathan D. Pyburn

Journal of Earth and Life Science

How white-tailed deer use the landscape in an urban environment can help us understand the effects of urbanization on deer populations. White-tailed deer form observable matriarchal hierarchies in studied populations. This study examines the matriarchal structure, home range size, and home range composition of 25 collared white-tailed deer within the city limits of Bemidji, MN. The results found no significant difference between age class and home range size or composition. However, movement metrics from yearling and mature age classes were more similar than the juvenile age class females. I propose this is because social acceptance between mature females was higher …

Relationship Of Utricle And Trap Door Size On Common Bladderworts Utricularia Macrorhiza, Tegwen Romportl

Journal of Earth and Life Science

The common bladderwort Utricularia macrorhiza is a carnivorous aquatic plant that captures organisms with its bladders. This study was aimed at setting the stage for future research which might determine if U. macrorhiza could be a biological method of control for invasive species. The objective of this study was to determine the relationship between utricle and trap door sizes and to gather data on the size ranges of these two morphological features. A regression analysis was used to obtain results which showed there was enough evidence to suggest that the size of bladderwort trap doors have a significant, positive relationship …

Using Lateral Flow Assay To Assess The Prevalence Of Trachemys Hybridization, Lillian Groves

Honors Program Theses

The current study focuses on Trachemys species, which is a group of freshwater turtles found throughout the Greater Antilles. The role of studying an isolated island, such as the Dominican Republic, is significant because it serves as a way to better understand how the combined effects of species migration, mass tourism, and climate change can greatly impact isolated species. Of particular significance is how these forces interact in complex ways to reshape habitats and threaten biodiversity. Additionally, the introduction of a highly invasive species, Trachemys scripta elegans (T. scripta), in this environment pressures native species by acting as a source …

Editorial: The Development And Evolution Of Larval Nervous Systems, Oliver Vöcking, Allan Carrillo-Baltodano, Néva Meyer

Biology

Throughout their development, animals of various taxa go through different larval stages, which have evolved adaptations to interact with specific environments. Larval nervous systems in particular experience strong selection pressures since they control crucial physiological and behavioral processes, especially in taxa with planktotrophic larvae that need to acquire food. Selection pressures also can vary across life history stages if there are differences in factors such as habitat, predation avoidance, and diet. There is evidence for this in the relationship of the larval nervous system to the adult nervous system, which can vary widely between species. Understanding the specific adaptations of …