Digital Commons Network^™

Small Grain Forage Production Guide, Matt Yost, Megan Baker, Earl Creech, Justin Wyatt Clawson, Michael Pace, Kalen Taylor, Cory Farnsworth, Jacob Hadfield, Corey Ransom, Steven Price, Claudia Nischwitz, Clara Anderson

All Current Publications

Small grain forages can be used for pasture, hay, and silage and have become more common in cropping systems in Utah and the western United States. The most common small grain species used for forage production are barley, oat, rye, triticale, and wheat. Although there has been an increase in the use of small grains for forage production in the western U.S., little published information is available on best management practices for small grain forage production. This guide will discuss the key production practices for small grains used for forage.

The Effect Of Livelihood Capital Accessibility On The Financial Security And Financial Well-Being Of Sheep Farming Households (Survey In Wanaraja Subdistrict, Garut Regency), Suhendarsyah Suhendarsyah, Unang Yunasaf, Sondi Kuswaryan

Jurnal Ilmu Ternak Universitas Padjadjaran

This study analyzed the influence of livelihood capital accessibility on the financial security and financial well-being of sheep-farming households in Wanaraja Subdistrict, Garut Regency. A quantitative approach was used through a survey with organized interviews of 95 sheep farmers. The research variables include livelihood capital accessibility (X), financial security (Z), and financial well-being (Y). The livelihood capital accessibility construct was built as a Higher-Order Construct with five dimensions: human, natural, financial and physical capital. Data analysis used Partial Least Square Structural Equation Modeling (PLS_SEM) with a two-stage approach. The results evince that social capital are the most influential dimensions in …

Reproductive Performance Of Friesian Holstein Crossbred Dairy Cattle After A Foot-And-Mouth Disease Outbreak In Lembang, Indonesia, Hanunghanindito Pamungkas, Septiyani Septiyani, Nurcholidah Solihati

Jurnal Ilmu Ternak Universitas Padjadjaran

Foot-and-mouth disease (FMD) is a highly contagious viral disease that may impair reproductive efficiency in dairy cattle. This study aimed to evaluate changes in the reproductive performance of Friesian Holstein crossbred dairy cows following an FMD outbreak at UPTD BPTSP and HPT Cikole, Lembang, West Java, Indonesia. A retrospective study was conducted using reproductive records collected from 2019 to 2023. The reproductive parameters analyzed were calving interval, service per conception, conception rate, service period, and first mating postpartum. Differences between the pre- and post-FMD periods were assessed using paired sample t-tests. The results showed significant differences in calving interval, service …

Polymorphism Of The Mx Gene In Riau Kampung Chickens, Elfawati Elfawati, Restu Misrianti, Sadarman Sadarman

Jurnal Ilmu Ternak Universitas Padjadjaran

One of the genetic markers for avian influenza is the Mx gene. The purposed of this study was to determine the polymorphism of the Mx gene of kampung chicken in Riau Province. A total of 61 samples from three subpopulations have been genotyped using PCR-RFLP. Allele and genotype frequencies have been calculated using PopGene. The Mx gene was amplified, producing a DNA fragment measuring 299 base pairs. This fragment was digested with the Hpy81 enzyme, which yielded three genotypes: the AA genotype showed by a single 299 bp band; AG showed by 299, 200, and 99 bp bands; and GG …

The Potency Of Inulin Extraction Waste Fermentation From Local Tubers As A Feed Additive, Mohamad Septian, Danes Suhendra, Mikael Sihite, Dyah Saputri

Jurnal Ilmu Ternak Universitas Padjadjaran

This study aims to determine the potential of inulin extraction waste fermentation as a feed additive based on the content of lactic acid, dry matter, pH, and Fleigh points. This research was conducted from March to June 2022 at the Animal Husbandry and Fisheries Laboratory, Tidar University. The experimental design used in this study was a Completely Randomized Design with 4 treatments (fermentation of inulin extraction waste: T1 Dioscorea alata (uwi), T2: ganyong (Dioscorea alata discolor), T3: gadung(Dioscorea hispida), and T4: umbi ungu (Ipomoea batatas). Each treatment was replicated 5 times. The variables …

The Potential Of Bioactive Peptides From Goat Milk Kefir With Antibacterial Activity As An Antibiotic Substitute, Dhea Athillah, Jajang Gumilar, Eka Wulandari

Jurnal Ilmu Ternak Universitas Padjadjaran

This study aims to determine the optimal incubation time for goat milk kefir that produces the highest antibacterial peptides, and to determine the antibacterial activity of purified goat milk kefir. Protein levels were determined using the microassay method. Kefir, which is known to have the best incubation time for producing the highest antibacterial activity when ultrafiltered with a 10 kDa cut-off membrane, was analyzed for its molecular weight using SDS-PAGE. The antibacterial activity was tested against pathogenic bacteria E. coli and S. aureus. The highest soluble protein content was found in kefir incubated for 36 hours, with a soluble …

Not Just Static: Evolutionary Throughlines In The Female Voice, Maria Hand '26

Honor Scholar Theses

Vocal communication is essential for many forms of human interaction and discourse. As such, the human voice has been the subject of extensive scientific research in a variety of contexts, including that of potentially evolved characteristics. Researchers have long studied the various changes that occur in direct relation to hormonal shifts across the ovulatory cycle, but one particularly interesting facet of this research is the voice. There are numerous acoustic parameters that are highly socially salient, and thus an ideal means with which to study potential ovulatory cycle related changes. Studies of this subject additionally provide further insight into the …

Ratfish (Chimaera Monstrosa) Chondocranium, Riley B. Glogowski, David W. Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Morphology, Phylogeny And Distribution Of Scaeurgus (Cephalopoda: Octopoda) In Southeast Pacific Seamounts, Sergio A. Carrasco, Christian M. Ibáñez, Andrea I. Varela, Jan M. Tapia-Guerra, Erin E. Easton, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

Octopuses of the genus Scaeurgus inhabit upper bathyal benthic habitats and are composed of five recognized species. In this study, we conducted morphological and molecular phylogenetic analyses of two individuals of Scaeurgus and provided additional field observations of the genus in seamounts of the Nazca and Salas y Gómez ridges (southeast Pacific Ocean) over the last six years. Specifically, two specimens of Scaeurgus were collected at 234 m depth in 2019 during the EPIC oceanographic cruise onboard the R/V Mirai (JAMSTEC, Japan), and five other specimens were video recorded at depths between 210 and 340 m during three oceanographic expeditions …

Dna Barcoding Of Eight Freshwater Fish Species (Order Siluriformes) From The River Ravi, Pakistan, Hafiz Muhammad Ashraf, Hafiz Abdullah Shakir, Muhammad Irfan, Shaukat Ali, Chaman Ara, Noor Khan, Muhammad Khan, Abdul Qadir, Muhammad Zafar Saleem

Karbala International Journal of Modern Science

Pakistan's freshwater bodies host significant fish species, but molecular identification is still in its infancy, necessitating the use of morphological and molecular DNA barcoding techniques. The study confirmed the species of the order Siluriformes found in the River Ravi, Pakistan, using DNA extracted from muscle tissue, sequenced for the COI gene, and obtained accession and Barcode Index Numbers from GenBank and BOLD databases. In the BLAST search, identities ranged from 99.23–100% and 99.52–100% in the GenBank and BOLD databases, respectively. The study revealed that the Kimura 2-Parameter genetic distance increased from lower to higher taxonomic levels: within species (0.00%) < within genus (15.17%) < within family (19.77%). The study estimated average nucleotide differences (104.964) and nucleotide diversity (0.16099) but found Tajima's neutrality test to be statistically insignificant. The neighbor-joining tree displayed closely linked species under a node, whereas divergent species were grouped under distinct nodes. The COI gene-based DNA barcoding aids in Pakistan's fish resource inventory, monitoring, and management, providing valuable input for traditional methods.

Eco-Assisted Ultrasonic Synthesis, Characterization, And Electrical Conductivity Study Of Polyaniline/ Silica@Fe3o4 Q1 Nanocomposites, Ali Salim Shaway, Kholoud Dham Khamkheem, Jawad Kadhim Abaies, Athra G. Sager

Karbala International Journal of Modern Science

وفي هذه الدراسة الصوتية، أصبحت السيليكا المُنتجة بأكسيد الحديد (Fe₃O₄) ومركبات نانوية قائمة على البولي أنيلين مُطعّم بنسبة 5-15% من السيليكا المُعزز للحديد (Fe₃O₄). وأكملت نهائيا ماء أنيلين والمركبات العلمية المتنوعة الارتباط باستخدام تقنيات FT-IR وUV-Vis وXRD وSEM وTEM. وأحدثت نتائج XRD أن حجم جسيمات البولينج أنيلين الناي (PANI) يبلغ 55.5. مكثف هذا الحجم إلى 45.2 عند تطعيم بولي أنيلين بنسبة 15% وزناً من السيليكا المُغلفة بأكسيد الحديد (Fe₃O₄) مُحضّرة بطريقة جيدة بشكل جيد، مما يميل إلى التمدد بشكل ثابت في تشكيل المركب المتباين المنظم. ضاقت النطاق البصري من 3.2 إلى 2.5 إلكترون فولت مع زيادة نسبة المطعّم، مما يشير …

Ultrasonography Accompanied By Genetic Testing In Feline Polycystic Kidney Disease, Thao Phuong Vu, Thong Quang Le, Ha Nguyen Nhat Tran, Khoa Hoang Dang Le, Anh Phu Nam Bui

The Thai Journal of Veterinary Medicine

Autosomal dominant polycystic kidney disease (ADPKD), caused by the PKD1 c.10063C>A mutation, is a prevalent inherited feline disorder, but its allele frequency in Vietnam remains unidentified. This study aimed to determine the carrier frequency of this variant in British Shorthair, Maine Coon, and Ragdoll cats in Ho Chi Minh City and to correlate genotype with ultrasonographic phenotype. Ninety-seven client-owned cats were genotyped for the pkd1 mutation using PCR-RFLP. A subset of 47 cats also underwent abdominal ultrasonography to detect renal cysts. Genotypic results were correlated with sonographic findings, and risk factors were analyzed using chi-square tests and odds ratios …

The Effects Of Sun Exposure On The Intensity And Distribution Of Salamander Biofluorescence, Julianne Chairez

Scholars Week

Salamanders have been used in a variety of different experiments to  determine the health of various ecosystems. Biofluorescence was recently studied in  amphibians in a study done in 2020. Not much is known about all its functions,  more studies are needed to fully understand how it works and how it can be affected  by environmental factors. Learning more about the functions of salamander  biofluorescence could lead to a greater understanding of how pollutants and human  impacts can affect salamanders and the health of their ecosystems. This project  aims to focus on tiger salamander biofluorescence and how its distribution and  intensity …

Characterization Of Srsf1’S Functions In Transcription And Alternative Splicing, Elena Bisotto

Electronic Theses and Dissertations 2020 - Present

Serine/Arginine splicing factor 1 (SRSF1) is an RNA-binding protein (RBP) that serves as a central regulator of RNA biogenesis. SRSF1 has been implicated in cell replication, motility, ageing, immune function, and other physiological processes, while its dysregulation is associated with multiple cancers and autoimmune diseases. In this study, we characterized the global impact and structural requirements of SRSF1-mediated gene regulation to elucidate its proto-oncogenic functions.

Utilizing a time-course RNA sequencing (RNA-seq) approach in HEK293 cells, we identified 28 primary transcriptional targets of SRSF1, 18 of which were consistently upregulated in the established cancer cell models PC-3 and MCF-7. These targets …

Using Machine Learning Algorithms To Clarify Relationships Between Soil Properties And Lead Stomach Bioaccessibility, Shehan Wijesinghe, Dibyendu Sarkar, Hadeer Saleh, Khalid Mustafa, Smitha Rao, Rupali Datta

Michigan Tech Publications

Featured Application: This paper has important applications in environmental health risk assessment and urban soil remediation planning. By demonstrating how machine learning can predict lead bioaccessibility in lead paint-contaminated soil, the study provides a scalable, cost-effective alternative to laboratory-based extraction methods. Such models could support rapid screening of contaminated sites, helping prioritize high-risk areas for intervention and allocate remediation resources more efficiently. This model is expected to advance data-driven decision-making for managing lead-contaminated soils and protect vulnerable urban populations from exposure. Lead contamination in urban soils, primarily from deteriorating lead-based paint, poses a significant health risk in the United States. …

Anti-Inflammatory And Insulin-Modulating Effects Of Tithonia-Curcuma-Moringa (Tcm) Formulation In Type 2 Diabetes: An Experimental Study In Mice, Rif’Atul Hawani Burhan, Nabila Shafa Yumna Salsabila, Devita Zulfa Pratama, La Tazkia Aulia Wibowo, Yulian Ervin Maulana, Moh Dliyauddin, Noviana Dwi Lestari, Agung Pramana Warih Marhendra, Aris Soewondo, Hideo Tsuboi, Muhaimin Rifa’I

Karbala International Journal of Modern Science

Type 2 diabetes is a chronic metabolic disorder characterized by hyperglycemia and chronic inflammation. This study investigated the anti-inflammatory and insulin-modulating effects of Tithonia-Curcuma-Moringa (TCM) formulation in type 2 diabetes model. Male BALB/c mice were divided into six groups: normal control, type 2 diabetes control, metformin treatment, and three TCM formulation treatment groups with three different dose combinations. Type 2 diabetes was induced using a high-fat diet combined with streptozotocin injection, supported by sucrose administration. After 21 days of treatment, the spleen and pancreas were isolated for flow cytometry analysis. The results showed that the expression levels of …

Exposure To Manganese During Juvenile Development Increases Microglial Activation In The Hippocampus Following Systemic Infection With A/California/04/2009 Influenza A H1n1 Virus, Megan Hager, Adam Schuller, Omar Yanouri, Collin Bantle, Richard Smeyne, Ronald Tjalkens

Farber Institute for Neuroscience Faculty Papers

Up to 80% of patients with Parkinson’s Disease (PD) develop dementia within 20 years of diagnosis. Although the etiology of PD and related neurodegenerative disorders is poorly understood, risk factors including environmental toxicants and viral infections are linked to disease onset and progression. Exposure to high doses of the essential element, manganese (Mn), causes neurotoxicity associated with parkinsonian symptoms and cognitive impairment in humans. Additionally, epidemiologic studies indicate that viral infections increase risk of developing PD. Previously, our lab demonstrated that mice exposed to Mn during juvenile development showed greater neuroinflammatory changes in microglia within the substantia nigra following systemic …

Screening Biostimulants To Enhance Early Growth Of Tomato (Solanum Lycopersicum L.) Under Water-Limited Conditions, Claudia Garrido-Ruiz, James Frisby, Amita Kaundal, Youping Sun, Milena Maria Tomaz De Oliveira

Plants, Soils, and Climate Faculty Publications

Biostimulants offer a sustainable strategy to improve plant growth and stress resilience, particularly under limited water availability. We evaluated seven biostimulant treatments, including beneficial bacteria, mycorrhizal fungi, seaweed extract with humic acid, and their combinations, on early growth and physiological responses of tomato (Solanum lycopersicum L.) under well–watered and drought-stressed conditions. Plants were assessed before and after a seven-day controlled drought period using a range of morphological and physiological traits, including height, effective quantum yield of PSII (Φ_PSII), stomatal conductance (g_s), and leaf pigment profile. Results showed that microbial treatments that included Bacteria + …

The Stability Study Of Dna-Polymer Hybrids For Nanotechnology Applications, Ethan Kuehn, Milan Jebaraj

Miners Solving for Tomorrow Research Conference

DNA nanostructures have garnered increasing interest in their application as drug delivery vehicles. However, DNA is susceptible to degradation under physiological conditions. To remedy this, we have devised a novel method to coat DNA nanostructures with the polysaccharide chitosan (a natural derivative of chitin). Chitosan binds to DNA electrostatically and inhibits nuclease activity that would normally degrade DNA in a physiological environment. We used both agarose gel electrophoresis (AGE) and atomic force microscopy (AFM) to determine the stability of DNA before and after immersion in a simulated biological environment. Physiological conditions were mimicked by incubating the DNA in cell culture …

Investigating The Role Of Sk-3 Interval I401 In Gene Drive By Neurospora Spore Killer-3, Alexandra Spriggs

Senior Theses – Biological Sciences

Neurospora crassa is a fungus that has been used to study genetics, more specifically, meiotic gene drive through its spore killing abilities. Meiotic drive describes a process in which selfish genetic elements bias Mendelian genetics to increase transmission to their offspring, eliminating any alleles that are sensitive. The spore killing mechanism of Neurospora’s Spore killer-3 (Sk-3) is an example of how meiotic drive works through a poison-antidote model. The Sk-3 genetic element consists of both a killing (poison) gene and a resistance (antidote) gene. The location of the resistance gene has been identified while the killing gene has not. To …

Structural Changes In Western Australia's Sheep Industry: Regional Patterns And Producer Adaptations, Tafesse Estifanos, Kate Pritchett, Kevin Foster, Amir Abadi Abadi Ghadim, Ross Kingwell

Animal production and livestock published reports

Western Australia's (WA) sheep industry has undergone substantial structural transformation since the 1990s, with a 67% reduction in the flock, from 38.4 million in 1989-90 to 12.7 million in 2020-21. This transformation process followed the collapse of the Reserve Price Scheme for wool in 1991. This report examines the spatial and temporal changes in flock size, composition, and producer adaptation strategies from 2010-11 to 2020-21, drawing on Australian Bureau of Statistics (ABS) census data and Meat and Livestock Australia (MLA) and Australian Wool Innovation (AWI) producer surveys data.

The Effects Of Climate Change On Competition And Recovery From Disturbance In An Iconic Marine Community, Lauren Tibbits

Senior Theses

This paper explores how the recovery of populations of Semibalanus balanoides is affected by climate variation. In intertidal marine ecosystems, larval recruitment is important in shaping all ecological processes. S. balanoides is a cold-water barnacle species that is competitively dominant over Chthamalus montagui and C. stellatus, two warm-water species. This competitive interaction is well studied, though it is not understood how that competition influences the recovery of S. balanoides after a disturbance nor how this process varies over a temperature gradient. 19 sites were studied across the United Kingdom, spanning from northern Scotland to southwestern England. At each site, a …

Antibiotics And You: A Comprehensive Guide, Brady Haas

Senior Theses

Antibiotic resistance is a rapidly emerging issue within public health. As resistance grows, the effectiveness of traditional antibiotic therapies diminishes while risk of treatment grows. Alongside novel therapies, public knowledge is a strong combatant of the resistance-related risks of antibiotic usage. Through a comprehensive review of current literature, this work serves as an accessible guide to the mechanisms of antibiotics, bacterial resistance, and the challenges related to current antibiotic usage. Additionally, the ability of current policy and emerging novel treatments, such as nanoparticles and bacteriophage therapy, to fight antibiotic resistance is evaluated. This analysis highlights the importance of improving public …

Cell-Free Mitochondrial Dna (Mtdna) Triggers Vascular Dysfunction Via Toll-Like Receptor 9 (Tlr9)-Dependent Activation Of Inflammasomes, Mohin Amin

Senior Theses

Hypertension is the leading global risk factor for mortality and is closely associated with vascular inflammation and dysfunction. Damaged mitochondria release cell-free mitochondrial DNA (cf-mtDNA), which activates toll-like receptor 9 (TLR9). The binding of TLR9 to mtDNA activates the NLRP3 inflammasome pathway, promoting the release of pro-inflammatory cytokines via gasdermin D (GSDMD), therefore worsening inflammation. However, the mechanisms linking mitochondrial injury to inflammation-induced vascular dysfunction remain unclear. We hypothesize that cf-mtDNA triggers TLR9-dependent NLRP3 inflammasome activation contributing to vascular and endothelial dysfunction. To assess that, adult male C57BL/6 were exposed to 28 consecutive days of chronic unpredictable stress (CUS) or …

Intermediates Or Intermedius? An Examination Of Lotic Sternotherus In Baldwin And Mobile Counties, Al, Peyton A. Wilson

Theses

The Southeastern United States is a biodiversity hotspot, and turtles are no exception to the rule. This is particularly true for the genus Sternotherus. Alabama is the only state home to all six species of Sternotherus, including the recently described Intermediate Musk Turtle (Sternotherus intermedius). It was thought that the Perdido River was the western boundary of Sternotherus intermedius; however, surveys in recent years produced questionable individuals in several small watersheds feeding into the Mobile-Tensaw Delta, bringing the species true range into question, as well as the question of if this species has hybridized with its congener, …

Remove To Recruit: The Short-Term Efficacy Of Invasive Shrub Removal In A Minnesota Floodplain Forest, Claire S. Wiley

Biology Honors Projects

Within Midwest floodplain forests, there is a lack of long-term studies focusing on native tree recruitment post invasive shrub removal. With interacting threats such as emerald ash borer (Agrilus planipennis), invasive earthworms, and white-tailed deer (Odocoileus virginianus), land managers need particular information about these ecosystems in order to better understand how to protect them. This study aims to explore the efficacy of the removal of Rhamnus cathartica and Lonicera spp. in promoting native tree recruitment within a Minnesota floodplain forest along the Mississippi River. Results revealed that post removal ash (Fraxinus spp.) seedling abundance …

Unpacking Developmental Programming: A Conceptual And Historical Analysis In The Context Of Dohad, Andrea Gretchev, Heide S. Temples, Gillian England-Mason, Deborah Dewey, Sara M. Sarasua, Christopher Farrell, Vivian Haley-Zitlin

Publications

The Developmental Origins of Health and Disease (DOHaD) paradigm posits that early environmental factors may influence a child’s development and long-term health outcomes. Developmental programming (DP) is central to this paradigm, whereby specific early life exposures during critical periods of development are associated with changes to physiological and metabolic pathways, potentially predisposing individuals to disease. However, no standard definition of DP exists, and various terms have been used to describe similar processes. This analysis aimed to develop a conceptual definition for DP to inform interdisciplinary research, education, and practice. Walker and Avant’s eight-step method was employed to analyze the literature, …

Energy Management And Water Balance In Migrating Hummingbirds, Shayne R. Halter

Biology ETDs

Small body size and rapid metabolism make annual migrations challenging for North American hummingbirds. Many of these birds make annual journeys of over 10,000 km. During migrations, hummingbirds use stopover sites, where they remain for several days to accumulate body fat. At these stopovers, they often encounter uncertainties in food resources, competition, and weather. To save energy, hummingbirds sometimes enter nocturnal torpor. My dissertation uses respirometry data, lipid measurements from Quantitative Magnetic Resonance, and feather hydrogen stable isotopes to understand how energy levels, migration patterns, torpor use, and water balance interact in four species of migrating hummingbirds. I discovered lipid …

Dendrimer Nanogels With Built-In Free Radical Scavenging Enable Efficient Topical Delivery Of A Hydrophilic Antioxidant To Restore Lens Redox Balance For Cataract Treatment, Lin Qi, Huari Kou, Anna Chernatynskaya, Da Huang, Vimalin Jeyalatha Mani, Humeyra Karacal, Nuran Ercal, Hu Yang

Chemistry Faculty Research & Creative Works

Cataract is a leading cause of vision impairment worldwide and are primarily caused by oxidative stress that damages and aggregates lens proteins, leading to lens opacification. However, the eye's anatomical barriers limit the penetration and bioavailability of antioxidant therapies. To address this challenge, a dendrimer-based nanogel with a built-in reactive oxygen species (ROS)-scavenging capability developed by us was employed to deliver the antioxidant N-acetylcysteine (NAC) to the lens. NAC was loaded into a generation-5 PEGylated poly(amidoamine) dendrimer (G5-PEG-TK, termed the GPT) nanogel. The resulting NAC-GPT was characterized for its ROS-scavenging activity, bioavailability, and corneal permeability. The efficacy of NAC-GPT was …

Does Social Grouping Influence Object Play By Belugas?, Javier Obiltas, Phillip Clayton

Posters - 2026

Play is defined as voluntary behavior that differs from functional behaviors and typically occurs in low-stress environments. In cetaceans, object play has been linked to development, motor skill practice, and social learning. Play behavior is an important factor of development in belugas, because belugas are social animals that live and interact within groups, the composition of these groups or "groupings" might influence their play behaviors. Understanding how said groupings may affect the play rates may help researchers better understand the development of behavior and social dynamics of the beluga groupings. The purpose of this study was to see whether grouping …