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Design And Implementation Of Degenerate Qpcr/Qrt-Pcr Primers To Detect Microbial Nitrogen Metabolism In Wastewater And Wastewater-Related Samples, Ryan F. Keeley

USF Tampa Graduate Theses and Dissertations

Nitrogen cycling processes can be tracked using quantitative Polymerase Chain Reaction (qPCR) to determine the presence and qReverse Transcriptase-PCR (qRT-PCR) to determine expression of key genes, or ‘biological markers’, for nitrogen metabolism. Nitrification is catalyzed in part, by two enzymes: ammonia monooxygenase (AMO; NH3 NH2OH) and nitrite oxidoreductase (NXR; NO2- NO3-). For denitrification, four enzymes act sequentially: nitrate reductase (NAR/NAP; NO3- NO2-), nitrite reductase (NIR; NO2- NO), nitric oxide reductase (NOR; NO  N2O), and nitrous oxide reductase (NOS; N2O  N2). A principle of wastewater treatment (WWT) is to remove excess nitrogen by taking advantage of natural nitrogen cycling …

Evolutionary History Predicts High‐Impact Invasions By Herbivorous Insects, Angela M. Mech, Kathryn A. Thomas, Travis D. Marsico, Daniel A. Herms, Craig R. Allen, Matthew P. Ayres, Kamal J.K. Gandhi, Jessica Gurevitch, Nathan P. Havill, Ruth A. Hufbauer, Andrew M. Liebhold, Kenneth F. Raffa, Ashley N. Schulz, Daniel R. Uden, Patrick C. Tobin

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. A long‐standing goal of invasion biology is to identify factors driving highly variable impacts of non‐native species. Although hypotheses exist that emphasize the role of evolutionary history (e.g., enemy release hypothesis & defense‐free space hypothesis), predicting the impact of non‐native herbivorous insects has eluded scientists for over a century.

2. Using a census of all 58 non‐native conifer‐specialist insects in North America, we quantified the contribution of over 25 factors that could affect the impact they have on their novel hosts, including insect traits (fecundity, voltinism, native range, etc.), host traits (shade tolerance, growth rate, wood density, etc.), and …

Global Sinusoidal Seasonality In Precipitation Isotopes, Scott T. Allen, Scott Jasechko, Wouter R. Berghuijs, Jeffrey M. Welker, Gregory R. Goldsmith, James W. Kirchner

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Quantifying seasonal variations in precipitation δ²H and δ¹⁸O is important for many stable isotope applications, including inferring plant water sources and streamflow ages. Our objective is to develop a data product that concisely quantifies the seasonality of stable isotope ratios in precipitation. We fit sine curves defined by amplitude, phase, and offset parameters to quantify annual precipitation isotope cycles at 653 meteorological stations on all seven continents. At most of these stations, including in tropical and subtropical regions, sine curves can represent the seasonal cycles in precipitation isotopes. Additionally, the amplitude, phase, and offset parameters of …

The Influence Of Neighborhood Landscape Characteristics On Native Bird Communities: Implications For Increasing Biodiversity In Our Yards, Michael E. Vermeulen

Dissertations and Theses

Avian communities, because of their potential high diversity, are ideal for studying the response to potential quantity of resources provided by local and regional habitat. Urban neighborhoods vary in types and magnitudes of anthropogenic stressors they experience, resulting in a continuum of anthropogenic disturbance, often referred to as a gradient of urbanization. The aim of this study was to investigate anthropogenic drivers of urban bird communities in three Portland, OR neighborhoods (Hillsdale, Lents, and Pearl). The three major questions of this study were: 1) What are the significant landscape traits that characterize the neighborhoods? 2) Is there evidence that the …

Do Corporate Owned Adaptive Learning Platforms Perpetuate Banking Style Learning? Integrating Technology For Activism Into Transformational Sustainability Education, Tina M. Garner

Leadership for Sustainability Education Comprehensive Papers

We live in a world that tends to be controlled by corporations. The public school system should be wary of the problems that corporate control has on education. Even though public schools should not have corporate influence, the fact remains that they do, and this perpetuates Freire's banking style learning. Through time, the corporate influence in education was through educational materials such as book sales. Since the decline of the use of books and the growth of the use of technologies, corporations have followed suit through the sales of Adaptive Learning Platforms. Through leveraging the technology which students enjoy using, …

Water Quality Analysis Of Ecoroof Runoff In Portland, Pranoti P. Deshmukh

Civil and Environmental Engineering Master's Project Reports

Portland, Oregon is internationally recognized for its implementation of sustainable stormwater management technologies. Ecoroof is one of the sustainable solutions to reduce stormwater runoff which also provides multiple environmental benefits. However, very little is known about the impact of ecoroofs on water quality of roof runoff. Stormwater runoff carries a significant amount of pollutants, which, if it directly enters a stream or river, degrades water quality and severely harms aquatic life.

This study evaluates the trends in the long-term water quality data from ecoroofs and conventional roofs in the Portland area. Mann Kendall trend test was used to detect the …

Coarse Root, Forest Litter, And Soil Organic Matter Contributions To Carbon Sequestration In Loblolly Pine (Pinus Taeda) Plantations In East Texas, William Wedge

Electronic Theses and Dissertations

Understanding ecosystem carbon dynamics is of increasing importance with atmospheric carbon dioxide (CO2) concentrations on the rise. Land management strategies, such as land use conversion, effect ecosystem carbon cycling dynamics and can alter the quantity of carbon sequestered in vegetation and soils. In East Texas and much of the southern United States, there has been a trend of converting marginal pastureland into loblolly pine (Pinus taeda) plantations. This afforestation, like all other land use conversions, leads to a redistribution of carbon in vegetation and soil carbon sinks. In 2003, five marginal pasturelands in East Texas were afforested with loblolly pine …

Comparison Of The Efficacy Of Four Drug Combinations For Immobilization Of Wild Pigs, Christine K. Ellis, Morgan E. Wehtje, Lisa L. Wolfe, Peregrine L. Wolff, Clayton D. Hilton, Mark C. Fisher, Shari Green, Michael P. Glow, Joeseph M. Halseth, Michael J. Lavelle, Nathan P. Snow, Eric H. Vannatta, Jack C. Rhyan, Kurt C. Vercauteren, William R. Lance, Pauline Nol

United States Department of Agriculture Wildlife Services: Staff Publications

Field immobilization of native or invasive wild pigs (Sus scrofa) is challenging. Drug combinations commonly used often result in unsatisfactory immobilization, poor recovery, and adverse side effects, leading to unsafe handling conditions for both animals and humans. We compared four chemical immobilization combinations, medetomidine–midazolam–butorphanol (MMB), butorphanol–azaperone–medetomidine (BAM™), nalbuphine–medetomidine–azaperone (NalMed-A), and tiletamine– zolazepam–xylazine (TZX), to determine which drug combinations might provide better chemical immobilization of wild pigs. We achieved adequate immobilization with no post-recovery morbidity withMMB. Adequate immobilization was achieved with BAM™; however, we observed post-recovery morbidity. Both MMB and BAM™ produced more optimal results relative to body temperature, recovery, and …

Metabolic Engineering Of Cyanobacteria For Production Of Chemicals, Po-Cheng Lin

McKelvey School of Engineering Graduate Student Theses & Dissertations

Concerns over the impact of climate change caused by CO2 emission have driven the research and development of renewable energies. Microbial production of chemicals is being viewed as a feasible approach to reduce the use of fossil fuels and minimize the impact of climate change. With recent advances in synthetic biology, microorganisms can be engineered to synthesize petroleum-based chemicals and plant-derived compounds. Cyanobacteria are photosynthetic prokaryotes that use only sunlight, CO2, and trace minerals for growth. Compared to other microbial hosts, cyanobacteria are attractive platforms for sustainable bioproduction, because they can directly convert CO2 into products. However, the major challenge …

Metabolic Engineering Of Cyanobacteria For Production Of Chemicals, Po-Cheng Lin

McKelvey School of Engineering Graduate Student Theses & Dissertations

Concerns over the impact of climate change caused by CO2 emission have driven the research and development of renewable energies. Microbial production of chemicals is being viewed as a feasible approach to reduce the use of fossil fuels and minimize the impact of climate change. With recent advances in synthetic biology, microorganisms can be engineered to synthesize petroleum-based chemicals and plant-derived compounds. Cyanobacteria are photosynthetic prokaryotes that use only sunlight, CO2, and trace minerals for growth. Compared to other microbial hosts, cyanobacteria are attractive platforms for sustainable bioproduction, because they can directly convert CO2 into products. However, the major challenge …

Vision In An Abundant North American Bird: The Red-Winged Blackbird, Esteban Fernández-Juricic, Patrice E. Baumhardt, Luke P. Tyrrell, Amanda Elmore, Shelagh T. Deliberto, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

Avian vision is fundamentally different from human vision; however, even within birds there are substantial between species differences in visual perception in terms of visual acuity, visual coverage, and color vision. However, there are not many species that have all these visual traits described, which can constrain our ability to study the evolution of visual systems in birds. To start addressing this gap, we characterized multiple traits of the visual system (visual coverage, visual acuity, centers of acute vision, and color vision) of the Red-winged Blackbird (Agelaius phoeniceus), one of the most abundant and studied birds in North America. We …

Evaluation Of Biodegradability Characteristics Of Cellulose-Based Film As Per Is/Iso 14855-1, Narayan C. Saha Dr, Gaurav Madhu Dr, Diksha B. Kadu Ms

Journal of Applied Packaging Research

Biodegradable polymers (especially those derived from plant sources) begin their lifecycle as renewable resources, usually in the form of starch or cellulose. In this paper, the evaluation of biodegradability of cellulose-based polymer film under controlled composting conditions as per the guidelines of IS/ISO 14855 (Part-1) standard has been described. Microcrystalline cellulose (MCC) powder was taken as positive-control polymer. The apparatus used to analyse the degree and rate of biodegradation was developed indigenously. The validation of the biodegradability testing apparatus was also performed as per the prescribed test method given in IS/ISO 14855-1.

Low Secondary Risks For Captive Coyotes From A Sodium Nitrite Toxic Bait For Invasive Wild Pigs, Nathan P. Snow, Katherine E. Horak, Simon T. Humphrys, Linton D. Staples, David G. Hewitt, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

An acute toxic bait is being developed to deliver micro‐encapsulated sodium nitrite (SN) to stimulate severe methemoglobinemia and humane death for invasive wild pigs (Sus scrofa), thereby providing a new tool for reducing their populations. During April 2016, we evaluated sensitivity to SN and outcomes of secondary consumption in the ubiquitous mammalian scavenger, coyote (Canis latrans), to determine secondary risks of consuming carcasses of wild pigs that died from consuming the SN toxic bait. At the National Wildlife Research Center in Fort Collins, Colorado, USA, we first evaluated whether coyotes fed carcasses of domestic pigs killed by consumption of SN …

Social Interactions Do Not Drive Territory Aggregation In A Grassland Songbird, S.K. Winnicki, S.M. Munguia, E.J. Williams, W.A. Boyle

United States National Park Service: Publications

Understanding the drivers of animal distributions is a fundamental goal of ecology and informs habitat management. The costs and benefits of colonial aggregations in animals are well established, but the factors leading to aggregation in territorial animals remain unclear. Territorial animals might aggregate to facilitate social behavior such as (1) group defense from predators and/or parasites, (2) cooperative care of offspring, (3) extra-pair mating, and/or (4) mitigating costs of extra-pair mating through kin selection. Using experimental and observational methods, we tested predictions of all four hypotheses in a tallgrass prairie in northeast Kansas, United States. Grasshopper Sparrow (Ammodramus savannarum) males …

Evaluating The Efficacy Of Point-Of-Use Water Filtration Units In Fiji, Nathan L. Tintle, Adam Heynen, Kristin Van De Griend, Rachel Ulrich, Matthew Ojo, Emma Boven, Sarah Brokus, Randall Wade, Aaron A. Best

Faculty Work Comprehensive List

Background: To develop and evaluate a strategy for reducing the prevalence and impact of waterborne disease, a water quality intervention was developed for Fiji by Give Clean Water, Inc. in partnership with the Fiji Ministry of Health. Residents were provided and trained on how to use a Sawyer® PointONE™ filter, while also being taught proper handwashing techniques. At the time of the filter installation, all households were surveyed inquiring about the prior 2- to 4-week period. Households were measured a second time between 19 and 225 days later (mean = 66 days).

Results: To date, five economic and health outcomes …

Expanding Beyond Carnivores To Improve Livestock Protection And Conservation, Shari L. Rodriguez, Christie Sampson

Publications

Promoting human–wildlife coexistence is critical to the long-term conservation of many wild animal species that come into conflict with humans. Loss of livestock to carnivore species (e.g., lions, tigers, wolves) is a well-documented occurrence and the focus of mitigation strategies around the world. One area that has received little research is the impact of noncarnivores on livestock. Both African and Asian elephant species are known to cause livestock injuries and deaths. Livestock owners within elephant ranges perceive elephants as a risk to their livestock, which may reduce their tolerance towards elephants and jeopardize conservation efforts in the area. Though feral …

The Fate Of Atmospherically Deposited Mercury In Mountain Lake Food Webs, And Implications For Fisheries Management, Ariana Martos Chiapella

Dissertations and Theses

Mountain lakes are an iconic feature of the landscape in the Mountain West. They hold significant ecological and cultural value, and are important sentinels of environmental change. Despite their pristine image, these remote waterbodies are subjected to numerous anthropogenic stressors. Mountain lakes are naturally fishless systems, but historical fish stocking has led to major changes in mountain lake food web structure, including declines of resident amphibians, large-bodied zooplankton, and emergent insect populations. Atmospherically deposited contaminants, such as mercury, can accumulate in mountain lake food webs, leading to relatively high levels in the fish relative to the water. Managing for these …

Modeling Irrigation Behavior In Groundwater Systems, Timothy Foster, Nicholas Brozovic, Adrian P. Butler

Daugherty Water for Food Global Institute: Faculty Publications

Integrated hydro-economic models have been widely applied to water management problems in regions of intensive groundwater-fed irrigation. However, policy interpretations may be limited as most existing models do not explicitly consider two important aspects of observed irrigation decision making, namely the limits on instantaneous irrigation rates imposed by well yield and the intraseasonal structure of irrigation planning. We develop a new modeling approach for determining irrigation demand that is based on observed farmer behavior and captures the impacts on production and water use of both well yield and climate. Through a case study of irrigated corn production in the Texas …

Multivariate Assessment Of Metal Contamination In Mtoni Sedimentary Environment, Tanzania, Matobola Mihale

Tanzania Journal of Science

Enrichment factor, geo-accumulation factor, contamination factor, degree of contamination, modified degree of contamination and potential contamination index were applied to assess the contamination of metals (Al, Cr, Mn, Fe, Ni, Cu, Zn, As, Cd and Pb ) in the Mtoni estuary sediments in Dar es Salaam, Tanzania. The sediment samples were sampled as appropriate, treated using established methods and analysed using inductively coupled plasma-high resonance mass spectrometry. The calculated enrichment factor values indicated contamination varying from minor (EF > 1) to severe contamination (EF > 50). The determined geo-accumulation index, contamination factor, degree of contamination, modified degree of contamination and potential contamination …

Traffic Noise And Sexual Selection: Studies Of Anthropogenic Impact On Bird Songs And Undergraduate Student Reasoning Of Evolutionary Mechanisms, Sarah Spier

School of Natural Resources: Dissertations, Theses, and Student Research

Humans have transformed much of the natural landscape and are continuing to do so at an accelerated rate, compromising natural areas that serve as important habitat for many species. Roads impact much of the environment as they fragment habitat and introduce traffic noise into the acoustic environment, deferentially affecting wildlife in roadside habitat. I explored how traffic noise affects the detection of birds based on whether their vocalizations were masked by traffic noise. Masked species detection was not affected by an increase in traffic noise amplitude, while there was a negative effect of traffic noise amplitude on unmasked species detection, …

Traffic Noise And Sexual Selection: Studies Of Anthropogenic Impact On Bird Songs And Undergraduate Student Reasoning Of Evolutionary Mechanisms, Sarah Spier

School of Natural Resources: Dissertations, Theses, and Student Research

Humans have transformed much of the natural landscape and are continuing to do so at an accelerated rate, compromising natural areas that serve as important habitat for many species. Roads impact much of the environment as they fragment habitat and introduce traffic noise into the acoustic environment, deferentially affecting wildlife in roadside habitat. I explored how traffic noise affects the detection of birds based on whether their vocalizations were masked by traffic noise. Masked species detection was not affected by an increase in traffic noise amplitude, while there was a negative effect of traffic noise amplitude on unmasked species detection, …

Effect Of Beaver On Brook Trout Habitat In North Shore, Lake Superior Streams, Kathryn Renik

Biology Graduate Theses

In Minnesota, North American Beavers Castor canadensis (hereafter Beaver) are considered to have an overall negative affect on native Brook Trout Salvelinus fontinalis. Brook Trout provide a valued and productive sport fishery to the North Shore streams of Lake Superior and since revival of the Beaver population from past trapping and timber harvest, a reexamination of the complex ecological relationship where the two taxa interact is imperative. Suitable Brook Trout habitat is characterized by cold, spring- fed water with silt-free rocky substrate and abundant cover, all of which Beaver may directly, or indirectly, affect. Data collection occurred on 79 (200 …

Historical Floodplain Sedimentation Rates Using Mining Contaminant Profiles, Cesium-137, And Sediment Source Indicators Along The Lower Big River, Jefferson County, Missouri, Miranda M. Jordan

Graduate Theses/Dissertations

Floodplain sedimentology and geochemistry can indicate the age of sediment layers to evaluate the history of human-caused sedimentation in a watershed. While the Ozark Highlands of Missouri has had a long history of settlement and land disturbance beginning in the early 1800s, there are few studies that have investigated the effects of these anthropogenic activities on river form and legacy sedimentation. The goal of this study is to characterize the sediment properties and geochemical trends in post-settlement floodplain deposits along lower Big River in Jefferson County, Missouri. This study evaluated trends of sediment properties at 3 cm intervals in a …

Geomorphic And Land Use Controls On Headwater Channel Morphology In Mark Twain National Forest, Grace F. Roman

Graduate Theses/Dissertations

Prescribed burning has been used over the past two decades to manage forests and restore shortleaf pine-oak woodlands in Mark Twain National Forest (MTNF). While soil studies have been completed, no assessments of burning practices on small drainage channel systems have yet been done. Headwater streams may account for more than two-thirds of total stream length and are important to the maintenance of hydrologic connectivity in watersheds. This study’s focus is on understanding the relationship between frequency of forest burning and channel morphology (size, shape, and substrate) of headwater streams (km²). A combination of field measurements, geo-processing methods, …

Bringing Forecasting Into The Future: Using Google To Predict Visitation In U.S. National Parks, Matt Clark, Emily J. Wilkins, Dani T. Dagan, Robert Powell, Ryan L. Sharp, Vicken Hillis

Human-Environment Systems Research Center Faculty Publications and Presentations

In recent years, visitation to U.S. National Parks has been increasing, with the majority of this increase occurring in a subset of parks. As a result, managers in these parks must respond quickly to increasing visitor-related challenges. Improved visitation forecasting would allow managers to more proactively plan for such increases. In this study, we leverage internet search data that is freely available through Google Trends to create a forecasting model. We compare this Google Trends model to a traditional autoregressive forecasting model. Overall, our Google Trends model accurately predicted 97% of the total visitation variation to all parks one year …

Microbial Community, Functioning, And Its Relationship With Heavy Metals In An Urban Brownfield, Jay Prakash Singh

Theses, Dissertations and Culminating Projects

The ubiquity of urban brownfields presents a challenge for environmental managers for managing degraded ecosystems that are in close contact with human habitation. Presence of metal contaminants in brownfields further complicate the matters as it cannot be degraded and hence pose a high risk to human and environmental health, and well-being of the local community. However, previous studies indicate that management and restoration of brownfields are possible through the use of low input longer term and sustainable remediation approaches. These sustainable approaches include the use of plants, fungi, and bacteria to increase soil function and mitigate risks from the contaminants. …

Predictive Biomarkers Demonstrating The Effect Of Levels Of Copper And Zinc From Exposure To World Trade Center 9/11 Particulate Matter On Human Esophageal Cells In Vitro, Rossara Nunez

Theses, Dissertations and Culminating Projects

The World Trade Center Attack on September 11th, 2001 was the largest environmental attack that has ever happened in New York City. In the aftermath of the collapse of the twin towers, many first responders and rescue workers were exposed to the resulting clouds of dust. This toxic material has been shown to be responsible for membrane damage in human lung cells and can possibly become the cause of increased oxidative stress. The underlying factors that produce these findings are thought to the synergistic effects of the many components found within the market street sample. Complete analysis of the heavy …

Exploring The Role Of Evaporation And Precipitation Rates On Mangrove Island Morphology, Isamar M. CortéS

Theses, Dissertations and Culminating Projects

Mangroves are salt tolerant species of trees that grow in tropical and subtropical environments. Mangroves provide ecosystem services to societies along marine environments, including storm protection, coastal biodiversity, and blue carbon storage. However, as the importance of mangrove ecosystems has become clearer over recent years, their coverage has been reduced through mismanagement and climate impacts. For instance, in terms of climate warming, mangroves cannot survive under abnormally high rates of net evaporation when soil stressor concentrations (e.g., sulfate, sulfide) increase above threshold conditions. To study the effects of this climate driver phenomenon on mangrove islands, we are examining mangrove islands, …

Stable Isotope And Geochemical Characterization Of Nutrient Sources In The Big Creek Watershed Of Northwest Arkansas, Kelly Robin Sokolosky

Graduate Theses and Dissertations

The establishment of a concentrated animal-feeding operation (CAFO) in Newton County, Arkansas near Big Creek, a tributary of the Buffalo National River, has raised concern over potential degradation of water-quality in the watershed. In this study, isotopic tools were combined with standard geochemical approaches to characterize nutrient sources and dynamics in Big Creek. An isotopic and geochemical reference library of potential nutrient sources in the Big Creek watershed was established by direct sampling of representative potential sources, including septic-system effluent, poultry litter, swine and cattle manure, and CAFO waste lagoons. Representative nutrient sources and Big Creek stream samples were analyzed …

Nesting Success Of Dickcissel (Spiza Americana) And Non-Breeding Grassland Bird Use Of Northwest Arkansas’ Remnant And Restored Tallgrass Prairies, Alyssa L. Derubeis

Graduate Theses and Dissertations

Dwindling populations of North American grassland birds are linked to habitat loss. Tallgrass prairie only covers 3% of its pre-settlement-era range. Small-scale restoration projects attempt to increase acreage for prairie avifauna, and while some breeding grassland species are present at these sites, nesting success and non-breeding use are still largely unknown. Both life history aspects are required for effective grassland bird conservation. My first objective was to access nest success of the Dickcissel (Spiza americana) at two remnant and two restored tallgrass prairies in Northwest Arkansas. From May-August 2017 and 2018, I found 114 nests that I monitored to determine …