Digital Commons Network^™

Instability Of Glucocorticoid Metabolites In Coyote Scats: Implications For Field Sampling, Erika T. Stevenson, Eric M. Gese, Lorin A. Neuman-Lee, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Studying physiologic stress responses can assist in understanding the welfare of animals. One method of measuring the physiologic stress response is evaluating concentrations of glucocorticoid metabolites in feces. Previously, using an adrenocorticotropic hormone challenge, we found fecal glucocorticoid metabolite levels were a reliable indicator of physiologic stress response in coyotes (Canis latrans). We determine whether glucocorticoid metabolite concentrations remain stable when collecting feces over a 2-week period, a timeframe commonly used in scat surveys for wild canids. We collected feces from 6 captive coyotes maintained at the U.S. Department of Agriculture, Wildlife Services, National Wildlife Research Center, Predator …

Deep Sea Isopods From The Western Mediterranean: Distribution And Habitat, Joan E. Cartes, Diego F. Figueroa

School of Earth, Environmental, & Marine Sciences Faculty Publications

Isopods are a highly diversified group of deep-sea fauna, with a wide variety of shapes which must reflect a similar great variety of adaptations to the deep environments. The deep Mediterranean, however, has a low diversity of isopods related to its oligotrophy, the thermal stability of deep-water masses (∼12.8 °C below 150 - 200 m) and rather homogeneous geomorphology. The main factor defining isopod habitats in the Balearic Basin is insularity vs mainland influence. Desmosomatidae and Ischnomesidae, examples of epibenthic species (with lack of paddle-shaped legs and non/low-natatory capacity) are mainly linked to mainland areas with higher % organic matter …

Trace Metals And The Environment: Studying The Behaviour Of Iceland’S Glacially Sourced Trace Metals, Owen Bailey

Independent Study Project (ISP) Collection

Trace metal contamination in marine ecosystems is a problem for every trophic level, from zooplankton up to humans. The mobility and uptake availability of these metals depend on such environmental parameters as salinity, temperature, and pH, among others. To explore the effects of varying parameters on dissolved metal behaviour, I studied the Jökulsárlón glacial lagoon, into which the Breidamerkurjökull glacier deposits trace metals from volcanic ash through glacial melt. In this study I develop and follow a sampling procedure to analyze trace metal concentrations in the lagoon, while additionally discussing the behaviour and impact of trace metals, focusing on cadmium, …

Methanosarcina Acetivorans Contains A Functional Isc System For Iron-Sulfur Cluster Biogenesis, Thomas M. Deere, Divya Prakash, Faith H. Lessner, Evert C. Duin, Daniel J. Lessner

Biological Sciences Faculty Publications and Presentations

Background

The production of methane by methanogens is dependent on numerous iron-sulfur (Fe-S) cluster proteins; yet, the machinery involved in Fe-S cluster biogenesis in methanogens remains largely unknown. Methanogen genomes encode uncharacterized homologs of the core components of the ISC (IscS and IscU) and SUF (SufBC) Fe-S cluster biogenesis systems found in bacteria and eukaryotes. Methanosarcina acetivorans contains three iscSU and two sufCB gene clusters. Here, we report genetic and biochemical characterization of M. acetivorans iscSU2.

Results

Purified IscS2 exhibited pyridoxal 5′- phosphate-dependent release of sulfur from L-cysteine. Incubation of purified IscU2 with IscS2, cysteine, and iron (Fe2+) resulted …

Assessment Of Soil Properties Under Different Land Use Types In Olokemeji Forest Reserves In Ogun State Southwestern Nigeria, Oluwatoyin Opeyemi Akintola, Adewunmi Idayat Bodede, Michael Smart, Ayodeji Gideon Adebayo, Olawale Nurean Sulaiman

Journal of Bioresource Management

Knowledge of soil properties is essential for environmental sustainability for any forest reserve or plantation. The physical and chemical properties of soil under three different land uses was investigated to assess the nutrient and fertility status of the soils. Fifteen soil samples, each collected from different locations within the natural forest, plantation and farm land were analyzed for soil texture, bulk density, porosity, pH, organic carbon, organic matter content, total nitrogen, available phosphorus, Na, K, Ca, Mg, Zn, Cu, Fe and Mn. Texturally, the soils were loamy, loamy sand and sandy loamy in the natural forest, plantation and farmland respectively. …

Systems Microbiology: From Genomes To Ecosystems, Jizhong Zhou

Sustainability Seminar Series

Twenty-first century microbiology faces several grand challenges, e.g., linking structure to functions, mechanisms controlling extremely high diversity, information scaling from genomes to ecosystems, modeling simulation and predictions. With the recent advances of omics technologies, microbiologists have begun to tackle some of these challenges. In this talk, I will report the most recently progresses in these areas at the Institute for Environmental Genomics, with respect to genomic technologies, global microbial diversity and biogeography of wastewater treatment plants, climate warming, community assembly and network tool development, and ecosystem modeling.

Experimental Approach And Initial Forest Response To A Simulated Ice Storm Experiment In A Northern Hardwood Forest, Lindsey E. Rustad, John L. Campbell, Charles T. Driscoll, Timothy J. Fahey, Peter M. Groffman, Paul G. Schaberg, Gary J. Hawley, Ian Halm, Frank Bowles, Wendy Leuenberger, Geoffrey Schwaner, Gabriel Winant, Brendan Leonardi

Advanced Science Research Center

Ice storms are a type of extreme winter weather event common to north temperate and boreal forests worldwide. Recent climate modelling studies suggest that these storms may become more frequent and severe under a changing climate. Compared to other types of storm events, relatively little is known about the direct and indirect impacts of these storms on forests, as naturally occurring ice storms are inherently difficult to study. Here we describe a novel experimental approach used to create a suite of ice storms in a mature hardwood forest in New Hampshire, USA. The experiment included five ice storm intensities (0, …

Waste Management In The Global South: An Inquiry On The Patterns Of Plastic And Waste Material Flows In Colombo, Sri Lanka, Katie Ann Conlon

Dissertations and Theses

Global plastic production continues to increase at an exponential pace, and global waste projections show waste generation rising by 70% by 2050. Plastic waste connects to all social processes, especially within the context of urbanization and development; urban planning and land management; GHG emissions; labor; social equity; public health; rural-to-urban migration; increasing population; increasing consumption; climate change; etc. The focus of this dissertation is an analysis of waste management practices in Sri Lanka using a grounded theory based methodology, with a goal to better understand the social and ecological impacts of plastic waste in Sri Lanka. This research fills a …

Application Of Modified River Health Index For Sungai Penchala, Sathis Venkitasamy

Student Works (2020-2029)

The aim of this study is to have a tool of management of an urban river. A simple tool in terms of index aimed to be developed to manage urban river to meet its intended usage. River Health Index (RHI) developed by combining both physico-chemical parameters and biological measures through scores and weightages. Sungai Penchala is the small urban river chosen for this study. Water quality study, which include physico-chemical parameters, benthic macroinvertebrates and surrounding land use activities have been carried out since May 2016 to September 2016. Ten sampling points have been selected to represent the condition of the …

Heavy Oil Production, Review Paper, Mohamed Abd El-Moniem

Emirates Journal for Engineering Research

Petroleum represents an important source of energy. The different resources for energy are classified into renewable and non-renewable. Petroleum is the main source of the non-renewable energy where it is found in conventional and non-conventional reservoirs. Conventional oil production is started since the last century with a high oil and gas production using primary and secondary recovery. Now, the global demand is high compared to the supply from the existing produced fields. The production is declining from the conventional resources, so the production from the unconventional reservoirs is essential to cover the market demand. The unconventional resources are classified as …

Water Quality Assessment In The Occurrence Of Acanthaster Spp. (Crown-Of-Thorns Starfish, Cots) On Coral Reefs In Menjangan Island, Bali, Indonesia, Novia Arinda Pradisty, Eghbert Elvan Ampou, Rizki Hanintyo

Makara Journal of Science

Aquatic stressors are known to cause biological impairment that can result in biodiversity loss in several Marine Protected Areas (MPA), including in Menjangan Island, West Bali National Park. The objectives of this study were to correlate the changes in water quality parameters with the biological effect of Crown-of-Thorns starfish (CoTS) population dynamics and to assess the most applicable parameters for continuous environmental monitoring. Field observations and surveys were conducted three times in 2017, during the wet season, dry season and season transition, in order to assess the effect of seasonal variability. Redundancy Analysis (RDA) was performed to determine the relationship …

Instability Of Glucocorticoid Metabolites In Coyote Scats: Implications For Field Sampling, Erika T. Stevenson, Eric M. Gese, Lorin A. Neuman-Lee, Susannah S. French

Human–Wildlife Interactions

Studying physiologic stress responses can assist in understanding the welfare of animals. One method of measuring the physiologic stress response is evaluating concentrations of glucocorticoid metabolites in feces. Previously, using an adrenocorticotropic hormone challenge, we found fecal glucocorticoid metabolite levels were a reliable indicator of physiologic stress response in coyotes (Canis latrans). We determine whether glucocorticoid metabolite concentrations remain stable when collecting feces over a 2-week period, a timeframe commonly used in scat surveys for wild canids. We collected feces from 6 captive coyotes maintained at the U.S. Department of Agriculture, Wildlife Services, National Wildlife Research Center, Predator …

The Concept Of Natureculture Document: A Conceptual Exploration Of Seeds, Embodied Information, And Unconventional Records, Marc Kosciejew

Journal of Contemporary Archival Studies

Seedbanks, or so-called archival arks of the apocalypse, are addressing accelerating anthropocentric alterations to the environment by collecting, storing, and preserving seeds. These are specialized archival repositories that approach, frame, and use seeds as documents for agricultural and scientific research, classification and preservation work, and various other archival and administrative purposes. Seedbanks indeed are archives of unconventional records.

This article introduces the concept of natureculture document as a framing device in which to help analyze the documentary status of objects that are not necessarily or usually considered as documents or having documentary characteristics. This concept, coupled with its interdisciplinary theoretical …

Algal Biomarkers As A Proxy For Pco2: Constraints From Late Quaternary Sapropels In The Eastern Mediterranean, Caitlyn R. Witkowski, Marcel T.J. Van Der Meer, Brian Blais, Jaap S. Sinninghe Damsté, Stefan Schouten

Science and Technology Department Faculty Journal Articles

Records of carbon dioxide concentrations (partial pressure expressed as pCO2) over Earth’s history provide trends that are critical to understand our changing world. To better constrain pCO2 estimations, here we test organic pCO2 proxies against the direct measurements of pCO2 recorded in ice cores. Based on the concept of stable carbon isotopic fractionation due to photosynthetic CO2 fixation (Ɛp), we use the stable carbon isotopic composition (δ13C) of the recently proposed biomarker phytol (from all photoautotrophs), as well as the conventionally used alkenone biomarkers (from specific species) for comparison, to reconstruct pCO2 over several Quaternary …

A Seasonal Study Of Ecoroof Metal And Nutrient Dynamics And Associated Drivers In An Ecoroof On A Commercial Building In North Portland Oregon, Alex Vijay Bans

Dissertations and Theses

Green stormwater infrastructure (GSI), specifically ecoroofs, is increasingly seen as an effective stormwater management tool in urban planning strategies. However, the literature suggests that ecoroofs can be sources of certain metals and nutrients. The goal of our study was to address two research questions: 1) How does ecoroof runoff compare to conventional roof runoff chemically: do ecoroofs retain certain chemicals and leach others? and 2) what are the roof characteristics and environmental variables that affect runoff quality? For 10 months, runoff events from an ecoroof were compared to those of a conventional roof; water samples were collected with autosamplers, and …

Effects Of Riparian Deforestation On Benthic Invertebrate Community And Leaf Processing In Atlantic Forest Streams, Monalisa Silva-Araujo, Eduardo F. Silva-Junior, Vinicius Neres-Lima, Rafael Feijo-Lima, Flavia Tromboni, Christine Lourenco-Amorim, Steven A. Thomas, Timothy P. Moulton

School of Natural Resources: Faculty Publications

Riparian deforestation may strongly affect stream functioning, with consequences for biodiversity and ecosystem services. These effects can be assessed using bioindicators relating to biotic community structure and ecosystem functioning. We evaluated the effects of riparian deforestation on 1. measures of community structure using aquatic benthic invertebrates, and 2. an aspect of ecosystem functioning, aquatic leaf processing. We selected sites along gradients of riparian land use in four Atlantic rainforest streams and measured physical and chemical properties for their association with riparian deforestation. We sampled benthic invertebrates and calculated metrics of community structure at each site. We measured rates of leaf …

A Statistical Impulse Response Model Based On Empirical Characterization Of Wireless Underground Channel, Abdul Salam, Mehmet C. Vuran, Suat Irmak

Faculty Publications

Wireless underground sensor networks (WUSNs) are becoming ubiquitous in many areas. The design of robust systems requires extensive understanding of the underground (UG) channel characteristics. In this paper, an UG channel impulse response is modeled and validated via extensive experiments in indoor and field testbed settings. The three distinct types of soils are selected with sand and clay contents ranging from $13\%$ to $86\%$ and $3\%$ to $32\%$, respectively. The impacts of changes in soil texture and soil moisture are investigated with more than $1,200$ measurements in a novel UG testbed that allows flexibility in soil moisture control. Moreover, the …

Resilience And Alternative Stable States After Desert Wildfires, Scott R. Abella, Dominic M. Gentilcore, Lindsay P. Chiquoine

Life Sciences Faculty Research

Improving models of community change is a fundamental goal in ecology and has renewed importance during global change and increasing human disturbance of the biosphere. Using the Mojave Desert (southwestern United States) as a model system, invaded by nonnative plants and subject to wildfire disturbances, we examined models of resilience, alternative stable states, and convergent-divergent trajectories for 36 yr of plant community change after 31 wildfires in communities dominated by the native shrubs Larrea tridentata or Coleogyne ramosissima. Perennial species richness on average was fully resilient within 23 yr after disturbance in both community types. Perennial cover was fully resilient …

Dynamic Scaling Of The Generalized Complementary Relationship (Gcr) Improves Long-Term Tendency Estimates In Land Evaporation, Jozsef Szilagyi, Richard Crago, Ning Ma

School of Natural Resources: Faculty Publications

Most large-scale evapotranspiration (ET) estimation methods require detailed information of land use, land cover, and/or soil type on top of various atmospheric measurements. The complementary relationship of evaporation (CR) takes advantage of the inherent dynamic feedback mechanisms found in the soil−vegetation−atmosphere interface for its estimation of ET rates without the need of such biogeophysical data. ET estimates over the conterminous United States by a new, globally calibrated, static scaling (GCR-stat) of the generalized complementary relationship (GCR) of evaporation were compared to similar estimates of an existing, calibration-free version (GCR-dyn) of the GCR that employs a temporally varying dynamic scaling. Simplified …

Agate Fossil Beds National Monument, Paleontological Resources Management Plan (Public Version), Scott Kottkamp, Vincent L. Santucci, Justin S. Tweet, Jessica De Smet, Ellen Stark

United States National Park Service: Publications

Executive Summary

Since Agate Springs Ranch was founded by James H. Cook in 1887, exquisite examples of transitional Miocene mammalian fauna have been found along this stretch of the Niobrara River valley. Collectively these paleontological discoveries, along with the existing archeological and historical Native American collection, were the basis for establishing Agate Fossil Beds National Monument (AGFO) as a unit of the National Park System (NPS). The fossil remains from the Harrison and Anderson Ranch formations span a short, but important, time period within the Miocene Epoch. AGFO has provided science with an intimate look into North American mammalian evolution …

Occupancy And Abundance Of Stream Salamanders Along A Specific Conductance Gradient, Jacob M. Hutton, Steven J. Price, Simon J. Bonner, Stephen C. Richter, Christopher D. Barton

Forestry and Natural Resources Faculty Publications

In the Central Appalachians (USA), mountaintop-removal mining accompanied by valley fills often leads to streams with elevated specific conductivity (SC). Thus, the ionic composition of freshwaters in this region is hypothesized to be a driver of the distribution and abundance of freshwater taxa, including stream salamanders. We examined the association between SC and stream salamander populations by conducting salamander counts in 30 southeastern Kentucky streams across a continuous gradient of SC that ranged from 30 to 1966 μS/cm. We counted 2319 salamanders across 5 species and, using a hierarchical Bayesian version of the N-mixture model, found a negative association between …

Defining Relictual Biodiversity: Conservation Units In Speckled Dace (Leuciscidae: Rhinichthys Osculus) Of The Greater Death Valley Ecosystem, Steven M. Mussmann, Marlis R. Douglas, David D. Oakey, Michael E. Douglas

Biological Sciences Faculty Publications and Presentations

The tips in the tree of life serve as foci for conservation and management, yet clear delimitations are masked by inherent variance at the species–population interface. Analyses using thousands of nuclear loci can potentially sort inconsistencies, yet standard categories applied to this parsing are themselves potentially conflicting and/or subjective [e.g., DPS (distinct population segments); DUs (Diagnosable Units-Canada); MUs (management units); SSP (subspecies); ESUs (Evolutionarily Significant Units); and UIEUs (uniquely identified evolutionary units)]. One potential solution for consistent categorization is to create a comparative framework by accumulating statistical results from independent studies and evaluating congruence among data sets. Our study illustrates …

A 23 M.Y. Record Of Low Atmospheric Co2, Ying Cui, Brian A. Schubert, A. Hope Jahren

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Current atmospheric CO2 concentration is known to be higher than it has been during the past ~800 k.y. of Earth history, based on direct measurement of CO2 within ice cores. A comparison to the more ancient past is complicated by a deficit of CO2 proxies that may be applied across very long spans of geologic time. Here, we present a new CO2 record across the past 23 m.y. of Earth history based on the δ¹³C value of terrestrial C3 plant remains, using a method applicable to the entire ~400 m.y. history of C3 photosynthesis on land. Across the …

Eating Barbed Wire: Direct And Indirect Defensive Roles Of Non-Glandular Trichomes, Ishveen Kaur, Rupesh R. Kariyat

School of Earth, Environmental, & Marine Sciences Faculty Publications

No abstract provided.

Inversion Modeling Of Japonica Rice Canopy Chlorophyll Content With Uav Hyperspectral Remote Sensing, Yingli Cao, Kailun Jiang, Jingxian Wu, Fenghua Yu, Wen Du, Tongyu Xu

Electrical Engineering Faculty Publications and Presentations

Chlorophyll content is an important indicator of the growth status of japonica rice. The objective of this paper is to develop an inversion model that can predict japonica rice chlorophyll content by using hyperspectral image of rice canopy collected with unmanned aerial vehicle (UAV). UAV-based hyperspectral remote sensing can provide timely and cost-effective monitoring of chlorophyll content over a large region. The study was based on hyperspectral data collected at the Shenyang Agricultural College Academician Japonica Rice Experimental Base in 2018 and 2019. In order to extract the salient information embedded in the high-dimensional hyperspectral data, we first perform dimension …

Applying A Systems Approach To The Legacy Of Lead In Soil, Sara Perl Egendorf

Dissertations, Theses, and Capstone Projects

Lead (Pb) in soil is a global environmental issue. The particularly high lead concentrations found in surface soils have been emplaced by humans and bring with them life-altering and life-shortening effects for our species and countless others. While much of the general population is unaware of lead lurking in our soils, scientists from a range of backgrounds have generated a body of research documenting this ubiquitous phenomenon, arising from sources such as lead in gasoline, paint, industry, and incineration. Scientists have also explored ways to remediate soil and continue calling for efforts to limit toxicant exposure. Why, then, does this …

Correlations Between Soil Redness And Soil Properties That Affect Non-Native Annual Plant Distribution In Chaparral And California Sage Scrub, Madeline Blua

Electronic Theses, Projects, and Dissertations

Non-native annual plant species have degraded California Sage Scrub and chaparral and present obstacles to shrubland restoration. Red soil patches in chaparral and California Sage Scrub of San Bernardino and Riverside counties appear to support fewer non-native annual plants than non-red soils. The purpose of this study was to confirm differences in vegetation cover between red and non-red soils in shrublands and to use soil analyses to determine possible causes. During vegetation surveys conducted in April of 2018, it was confirmed that red soil sites had lower cover of non-native plants and higher cover of native plant species than the …

Assessing The Influence Of International Environmental Treaty Secretariats Using A Relational Network Approach, Andrew M. Song, Owen Temby, Dongkyu Kim, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

The influential role of international treaty secretariats in coordinating bureaucracies across jurisdictional boundaries has been highlighted in recent years. While we now better understand how their influence occurs, the field still faces a substantial difficulty in answering the basic quantitative question of “how influential?” By employing network analysis, we devised and tested a survey to quantify secretariat influence within an international environmental regime. We applied the survey tool to two transboundary fisheries governance networks in North America and here focus on the Great Lakes Fishery Commission (GLFC) as our primary case study. The results demonstrate a high ability of treaty …

Sensory Stressors Impact Species Responses Across Local And Continental Scales, Ashley A. Wilson

Master's Theses

Pervasive growth in industrialization and advances in technology now exposes much of the world to anthropogenic night light and noise (ANLN), which pose a global environmental challenge in terrestrial environments. An estimated one-tenth of the planet’s land area experiences artificial light at night — and that rises to 23% if skyglow is included. Moreover, anthropogenic noise is associated with urban development and transportation networks, as the ecological impact of roads alone is estimated to affect one-fifth of the total land cover of the United States and is increasing in space and intensity. Existing research involving impacts of light or noise …

1,4-Dioxane Biodegradation In Propanotrophs: Molecular Foundations And Implications For Environmental Remediation, Li Fei

Dissertations

1,4-Dioxane (dioxane) has emerged with an escalating concern given its human carcinogenicity and widespread occurrence in groundwater. Bioremediation is promising as an effective and cost-efficient treatment alternative for in situ or ex situ cleanup of dioxane and co-existing pollutants in the field. Soluble di-iron monooxygenases (SDIMOs) are reputed for their essential roles in initiating the cleavage of dioxane and other pollutants. In this doctoral dissertation, molecular foundations for SDIMOs-mediated dioxane biodegradation are untangled to promote the development and implication of site-specific bioremediation and natural attenuation strategies. This dissertation focused on propanotrophic bacteria given their pivotal roles in dioxane metabolism and …